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タグ: chip2 [13 articles]

Recent papers classified by the tag chip2.
  • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
    BMC Bioinformatics, Vol. 5 (18 March 2004)
    by F Gao, BC Foat, HJ Bussemaker
    posted to chip2 network reconstruction regulatory transcription by koller on 2006-08-26 02:12:23 as ** along with 7 people and 1 group tmmurali tuck gpalidwor nickluscombe Ao_Li2007 mariakmejia tvdbulck EBI-regulation
  • Genome-wide map of nucleosome acetylation and methylation in yeast.
    Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527.
    by DK Pokholok, CT Harbison, S Levine, M Cole, NM Hannett, TI Lee, GW Bell, K Walker, PA Rolfe, E Herbolsheimer, J Zeitlinger, F Lewitter, DK Gifford, RA Young
    posted to chip2 chromatin regulatory by koller on 2006-09-19 01:51:41 as ** along with 4 people and 1 group nucleosome kengg olympos redfish99213 Plantandetc
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to chip2 cis-regulation network reconstruction transcription by koller on 2006-08-26 02:17:54 as ** along with 12 people and 1 group ggrot dragonrez bayesian wnpx nickluscombe frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
  • Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.
    Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635.
    by MJ Herrgård, BS Lee, V Portnoy, BØ Palsson
    posted to chip2 metabolic network network_motif reconstruction regulatory transcription by koller on 2006-08-31 06:35:02 as **** along with 7 people and 3 groups JeremyZucker nickluscombe aswin kengg raiyar cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to chip2 cis-regulation network regulatory transcription by koller on 2006-09-19 01:50:34 as ** along with 24 people and 8 groups alokm tuck chad_davis lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • Linking DNA-binding proteins to their recognition sequences by using protein microarrays.
    Proc Natl Acad Sci U S A (19 June 2006)
    by Su-Wen W Ho, Ghil Jona, Christina T L T Chen, Mark Johnston, Michael Snyder
    posted to chip2 cis-regulation sequence_motif transcription by koller on 2006-08-31 01:31:53 as ** along with 4 people and 3 groups emilyhare samal nickluscombe kengg EisenLab EBI-regulation Plantandetc
  • A Systems Approach to Mapping DNA Damage Response Pathways
    Science, Vol. 312, No. 5776. (19 May 2006), pp. 1054-1059.
    by Christopher T Workman, Craig H Mak, Scott Mccuine, Jean-Bosco Tagne, Maya Agarwal, Owen Ozier, Thomas J Begley, Leona D Samson, Trey Ideker
    posted to chip2 cis-regulation dna-repair reconstruction regulatory by koller on 2006-08-24 05:52:47 as **** along with 5 people biozhang2001 jfr nirfriedman cconboy tmmurali
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to chip2 cis-regulation network network_motif reconstruction by koller on 2006-08-25 21:02:21 as *** along with 13 people rklancer kentsis tardigrade balicea tabu cconboy Stew faisalm mikaelhuss tdmckee brant dquest kengg
  • Extensive low-affinity transcriptional interactions in the yeast genome.
    Genome Res (29 June 2006)
    by Amos Tanay
    posted to chip2 cis-regulation sequence_motif by koller on 2006-08-25 21:33:38 as ** along with 6 people and 1 group devin indigoviolet dpollard balicea lusk emptyhb EisenLab
  • Discovering regulatory and signalling circuits in molecular interaction networks.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by T Ideker, O Ozier, B Schwikowski, AF Siegel
    posted to chip2 network p2p reconstruction regulatory signaling by koller on 2006-08-24 06:20:37 as ** along with 6 people and 2 groups dragonrez okarsligil lfriedl noano frohike carlk kdl Bioinformatics
  • Integrated assessment and prediction of transcription factor binding.
    PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006)
    by A Beyer, C Workman, J Hollunder, D Radke, U Möller, T Wilhelm, T Ideker
    posted to bayesian chip2 reconstruction regulation transcription by koller on 2006-08-24 05:46:21 as **** along with 3 people and 1 group nickluscombe aswin mariakmejia EBI-regulation
  • Validation and refinement of gene-regulatory pathways on a network of physical interactions.
    Genome Biol, Vol. 6, No. 7. (2005)
    by CH Yeang, HC Mak, S McCuine, C Workman, T Jaakkola, T Ideker
    posted to bayesian chip2 p2p reconstruction regulatory transcription by koller on 2006-08-24 06:06:06 as ** along with 11 people and 1 group snuppepuppan abhik tmmurali textoris wnpx noano ccr cdppublications AlexanderPico carlk jago CDP
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to chip2 cis-regulation network reconstruction transcription by koller on 2006-08-26 02:17:09 as *** along with 26 people and 2 groups camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
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