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タグ: catalytic [32 articles]

Recent papers classified by the tag catalytic.
  • Catalytic antibodies in healthy humans and patients with autoimmune and viral diseases.
    J Cell Mol Med, Vol. 7, No. 3. (p 2003), pp. 265-276.
    by GA Nevinsky, VN Buneva
    posted to abzyme antibody autoimmune catalytic disease viral by xico on 2006-01-17 21:06:40 as **** along with 1 person and 1 group erika WetBiology
  • Diversification of Catalytic Activities and Ligand Interactions in the Protein Fold Shared by the Sugar Isomerases, eIF2B, DeoR Transcription Factors, Acyl-CoA Transferases and Methenyltetrahydrofolate Synthetase
    Journal of Molecular Biology, Vol. 356, No. 3. (24 February 2006), pp. 823-842.
    by Vivek Anantharaman, L Aravind
    posted to catalytic domain evolution by tny on 2006-05-07 05:59:28 as **
  • Definitions of enzyme function for the structural genomics era
    Current Opinion in Chemical Biology, Vol. 7, No. 2. (April 2003), pp. 230-237.
    by Patricia C Babbitt
    posted to catalytic enzyme review by tny on 2006-05-09 06:38:34 as ** along with 2 people and 2 groups ana eweaver structural_bioinformatics Bioinformatics
  • The complement of enzymatic sets in different species.
    J Mol Biol, Vol. 349, No. 4. (17 June 2005), pp. 745-763.
    by S Freilich, RV Spriggs, RA George, B Al-Lazikani, M Swindells, JM Thornton
    posted to catalytic enzyme by tny on 2006-01-31 05:55:48 as ** along with 2 people gbart jwm
  • Plasticity of enzyme active sites
    Trends in Biochemical Sciences, Vol. 27, No. 8. (1 August 2002), pp. 419-426.
    by Annabel E Todd, Christine A Orengo, Janet M Thornton
    posted to catalytic enzyme review by tny on 2005-12-22 05:50:23 as ** along with 1 person shuns
  • Inactive Enzyme-homologues Find New Function in Regulatory Processes
    Journal of Molecular Biology, Vol. 340, No. 3. (9 July 2004), pp. 399-404.
    by Birgit Pils, Jorg Schultz
    posted to catalytic enzyme protein review by tny on 2005-12-07 05:23:23 as ** along with 2 people jwm Jporci
  • SCOPEC: a database of protein catalytic domains.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by RA George, RV Spriggs, JM Thornton, B Al-Lazikani, MB Swindells
    posted to catalytic database_issue domain enzyme by tny on 2006-05-19 19:09:52 as ** along with 1 person gbart
  • Catalysing New Reactions during Evolution: Economy of Residues and Mechanism
    Journal of Molecular Biology, Vol. 331, No. 4. (22 August 2003), pp. 829-860.
    by Gail J Bartlett, Neera Borkakoti, Janet M Thornton
    posted to 13jan06 catalytic enzyme protein by tny on 2005-12-07 05:23:00 as *** along with 1 person ucbcjbm
  • MACiE: a database of enzyme reaction mechanisms.
    Bioinformatics (27 September 2005)
    by Gemma L L Holliday, Gail J J Bartlett, Daniel E E Almonacid, Noel M M O'boyle, Peter Murray-Rust, Janet M M Thornton, John B O B Mitchell
    posted to catalytic database_issue enzyme by tny on 2006-05-06 06:55:48 as ** along with 5 people gbart eweaver ucbcjbm grottenolm gemmalholliday
  • Analysis of Catalytic Residues in Enzyme Active Sites
    Journal of Molecular Biology, Vol. 324, No. 1. (15 November 2002), pp. 105-121.
    by Gail J Bartlett, Craig T Porter, Neera Borkakoti, Janet M Thornton
    posted to catalytic enzyme protein by tny on 2005-11-30 09:38:17 as *** along with 2 people baaden chrn
  • Chemical diversity through biotransformations
    Current Opinion in Biotechnology, Vol. 15, No. 6. (December 2004), pp. 591-598.
    by Michael Muller
    posted to catalytic enzyme multifunctional_enzyme review by tny on 2006-12-06 09:54:00 as **
  • Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database.
    Biochemistry, Vol. 45, No. 8. (28 February 2006), pp. 2545-2555.
    by SC Pegg, SD Brown, S Ojha, J Seffernick, EC Meng, JH Morris, PJ Chang, CC Huang, TE Ferrin, PC Babbitt
    posted to catalytic database_issue enzyme by tny on 2006-05-06 05:56:49 as ** along with 4 people ucbcjbm kuhn jdiggans sim82
  • EzCatDB: the Enzyme Catalytic-mechanism Database.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by N Nagano
    posted to catalytic by sim82 on 2008-07-05 17:54:34 as ** along with 4 people ziquje eweaver tny Jporci
  • Understanding Enzyme Superfamilies. Chemistry as the fundamental determinant in the evolution of new catalytic activities
    J. Biol. Chem., Vol. 272, No. 49. (5 December 1997), pp. 30591-30594.
    by PC Babbitt, JA Gerlt
    posted to catalytic evolution by sim82 on 2008-07-07 16:50:32 as **
  • Understanding nature's catalytic toolkit.
    Trends Biochem Sci (5 October 2005)
    by A Gutteridge, JM Thornton
    posted to catalysis catalytic by sim82 on 2008-07-07 15:07:44 as ** along with 10 people and 4 groups ana jwm Einat alexg gbart eweaver tny noby siebertm grottenolm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
  • Analysis of catalytic residues in enzyme active sites.
    J Mol Biol, Vol. 324, No. 1. (15 November 2002), pp. 105-121.
    by GJ Bartlett, CT Porter, N Borkakoti, JM Thornton
    posted to active analysis catalytic enzyme residues sites by siebertm on 2007-05-14 10:55:17 as ** along with 4 people baaden gbart nickolay sriram_s
  • On the Magnitude and Specificity of Medium Effects in Enzyme-like Catalysts for Proton Transfer
    J. Org. Chem., Vol. 66, No. 17. (24 August 2001), pp. 5866-5874.
    by F Hollfelder, AJ Kirby, DS Tawfik
    posted to catalytic effects environment enzyme medium non-polar residues by siebertm on 2007-05-16 12:32:51 as *
  • The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by CT Porter, GJ Bartlett, JM Thornton
    posted to active catalytic database enzyme residues sites by siebertm on 2007-05-12 15:10:02 as read along with 8 people and 2 groups baaden chrn jwm gbart tny sriram_s massivemayhem grottenolm Radiation_Damage Stressosome
  • How accurate and statistically robust are catalytic site predictions based on closeness centrality?
    BMC Bioinformatics, Vol. 8 (11 May 2007), 153.
    by Eric Chea, Dennis R Livesay
    posted to structure-activity protein prediction network centrality catalytic bioinformatics by neils on 2008-09-17 07:28:00 as ** along with 2 people and 1 group Einat massivemayhem structural_bioinformatics
  • Structure and refinement at 1.8 A resolution of the aspartic proteinase from Rhizopus chinensis.
    Journal of molecular biology, Vol. 196, No. 4. (20 August 1987), pp. 877-900.
    by K Suguna, RR Bott, EA Padlan, E Subramanian, S Sheriff, GH Cohen, DR Davies
    posted to catalytic conserved water by jonasvasur on 2008-05-13 10:18:50 as **
  • Properties of P-glycoprotein with mutations in the "catalytic carboxylate" glutamate residues.
    J Biol Chem, Vol. 279, No. 45. (5 November 2004), pp. 46518-46526.
    by G Tombline, LA Bartholomew, GA Tyndall, K Gimi, IL Urbatsch, AE Senior
    posted to carboxylate catalytic dimer hydrolysis interface nbd by happy_manatee on 2006-03-23 22:25:13 as **
  • Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
    FEBS Letters, Vol. 580, No. 1. (9 January 2006), pp. 137-143.
    by Shintaro Kitaoka, Kei Wada, Yuko Hasegawa, Yoshiko Minami, Keiichi Fukuyama, Yasuhiro Takahashi
    posted to allostery catalytic qloop by happy_manatee on 2006-08-03 20:48:09 as **
  • H662 is the linchpin of ATP hydrolysis in the nucleotide-binding domain of the ABC transporter HlyB
    The EMBO Journal, Vol. aop, No. current. (12 May 2005)
    by Jelena Zaitseva, Stefan Jenewein, Thorsten Jumpertz, Barry B Holland, Lutz Schmitt
    posted to 1xef atp carboxylase catalytic dimer hydrolysis interface nbd psb by happy_manatee on 2006-03-24 01:43:14 as ** along with 1 person martainn
  • The Q-loop Disengages from the First Intracellular Loop during the Catalytic Cycle of the Multidrug ABC Transporter BmrA
    J. Biol. Chem., Vol. 280, No. 44. (4 November 2005), pp. 36857-36864.
    by Olivier Dalmas, Cedric Orelle, Anne-Emmanuelle Foucher, Christophe Geourjon, Serge Crouzy, Attilio Di Pietro, Jean-Michel Jault
    posted to allostery catalytic qloop by happy_manatee on 2006-08-03 19:53:22 as **
  • Structure of the human multidrug resistance protein 1 nucleotide binding domain 1 bound to Mg2+/ATP reveals a non-productive catalytic site.
    J Mol Biol, Vol. 359, No. 4. (16 June 2006), pp. 940-949.
    by O Ramaen, N Leulliot, C Sizun, N Ulryck, O Pamlard, JY Lallemand, H Tilbeurgh, E Jacquet
    posted to 2cbz abcc1 catalytic by happy_manatee on 2006-08-17 19:39:31 as **
  • Both ATP sites of human P-glycoprotein are essential but not symmetric.
    Biochemistry, Vol. 38, No. 42. (19 October 1999), pp. 13887-13899.
    by CA Hrycyna, M Ramachandra, UA Germann, PW Cheng, I Pastan, MM Gottesman
    posted to abcb1 catalytic context cycle mdr1 mutants nbd by happy_manatee on 2006-08-09 19:46:25 as **
  • Conserved walker A Ser residues in the catalytic sites of P-glycoprotein are critical for catalysis and involved primarily at the transition state step.
    J Biol Chem, Vol. 275, No. 32. (11 August 2000), pp. 25031-25038.
    by IL Urbatsch, K Gimi, S Wilke-Mounts, AE Senior
    posted to abcb1 carboxylate catalytic mdr1 mutants pgp by happy_manatee on 2006-08-09 19:43:29 as **
  • Protein kinase C chimeras: catalytic domains of alpha and beta II protein kinase C contain determinants for isotype-specific function
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 20. (1995), pp. 9156-9160.
    by SD Walker, NR Murray, DJ Burns, AP Fields
    posted to protein kinase domain catalytic c by GermanErlenkamp on 2008-09-18 15:07:50 as **
  • A catalytic mechanism for the dual-specific phosphatases.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 13. (20 June 1995), pp. 5910-5914.
    by JM Denu, JE Dixon
    posted to catalytic dusp mechanism by dkoveal on 2008-08-13 15:51:36 as **
  • Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties
    BMC Bioinformatics, Vol. 7 (21 June 2006), 312.
    by Natalia V Petrova, Cathy H Wu
    posted to catalytic prediction refs_catalytic residues svm by chrn on 2007-02-16 10:57:22 as ** along with 1 person sriram_s
  • Disaggregation of Alzheimer beta-amyloid by site-directed mAb.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 8. (15 April 1997), pp. 4109-4112.
    by B Solomon, R Koppel, D Frankel, E Hanan-Aharon
    posted to abeta catalytic dissolution fibrils-hypothesis of by bbiscaro on 2008-05-07 15:04:52 as **
  • Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases
    Science, Vol. 266, No. 5193. (23 December 1994), pp. 1981-1986.
    by F Dyda, AB Hickman, TM Jenkins, A Engelman, R Craigie, DR Davies
    posted to catalytic crystal domain hiv-1 integrase of structure the by arlam on 2008-08-16 01:59:03 as ** along with 1 group group
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