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タグ: cafasp [26 articles]

Recent papers classified by the tag cafasp.
  • Assessment of disorder predictions in CASP6.
    Proteins (26 September 2005)
    by Yumi Jin, Roland L L Dunbrack
    posted to bioinformatics cafasp casp model_evaluation protein_disorder by marcius on 2005-10-22 09:09:32 as ** along with 2 people and 2 groups niallhaslam chad_davis BioinfoCIPF SGU-CIPF
  • Can correct protein models be identified?
    Protein Sci, Vol. 12, No. 5. (May 2003), pp. 1073-1086.
    by B Wallner, A Elofsson
    posted to cafasp casp model_assessment by marcius on 2005-10-21 21:10:50 as ** along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
  • All are not equal: A benchmark of different homology modeling programs
    Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327.
    by Bjorn Wallner, Arne Elofsson
    posted to cafasp casp comparative_modeling by marcius on 2006-03-02 03:40:24 as ** along with 6 people and 2 groups cdeane karbak eweaver BioNica rsantana hmk BioinfoCIPF SGU-CIPF
  • The significance of performance ranking in CASP--response to Marti-Renom et al.
    Structure (Camb), Vol. 10, No. 3. (March 2002)
    by J Moult, K Fidelis, A Zemla, T Hubbard, A Tramontano
    posted to cafasp casp by marcius on 2005-10-20 21:34:47 as read along with 2 groups BioinfoCIPF SGU-CIPF
  • Prediction of novel and analogous folds using fragment assembly and fold recognition.
    Proteins (26 September 2005)
    by D T T Jones, K Bryson, A Coleman, L J J McGuffin, M I I Sadowski, J S S Sodhi, J J J Ward
    posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius on 2005-10-22 08:57:29 as **** along with 2 groups BioinfoCIPF SGU-CIPF
  • Protein structure prediction using a variety of profile libraries and 3D verification.
    Proteins (26 September 2005)
    by Kentaro Tomii, Takatsugu Hirokawa, Chie Motono
    posted to bioinformatics cafasp casp model_assessment structure_prediction by marcius on 2005-10-22 09:11:09 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • TASSER: An automated method for the prediction of protein tertiary structures in CASP6.
    Proteins (26 September 2005)
    by Yang Zhang, Adrian K K Arakaki, Jeffrey Skolnick
    posted to cafasp casp model_assessment structure_alignment by marcius on 2005-10-22 08:58:50 as ** along with 4 people and 2 groups nigham dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
  • Scoring docking models with evolutionary information.
    Proteins, Vol. 60, No. 2. (1 August 2005), pp. 275-280.
    by M Tress, D de Juan, O Graña, MJ Gómez, P Gómez-Puertas, JM González, G López, A Valencia
    posted to bioinformatics cafasp casp protein_interactions by marcius on 2005-10-22 09:02:06 as ** along with 3 people and 2 groups bicko ameetsoni cjeans BioinfoCIPF SGU-CIPF
  • Progress in Modeling of Protein Structures and Interactions
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642.
    by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker
    posted to ab-initio bioinformatics biophysics cafasp comparative_modeling review structure_prediction by marcius on 2005-10-28 00:14:41 as read along with 13 people and 3 groups thaliana jwm vavi bicko KyuhoLee eweaver tny nickolay dgront rsantana mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
  • Domain definition and target classification for CASP6.
    Proteins (26 September 2005)
    by Michael Tress, Chin-Hsien H Tai, Guoli Wang, Iakes Ezkurdia, Gonzalo López, Alfonso Valencia, Byungkook Lee, Roland L L Dunbrack
    posted to cafasp casp protein_domains by marcius on 2005-10-22 09:01:23 as *** along with 2 groups BioinfoCIPF SGU-CIPF
  • Practical lessons from protein structure prediction.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891.
    by K Ginalski, NV Grishin, A Godzik, L Rychlewski
    posted to cafasp casp comparative_modeling model_assessment structure_prediction by marcius on 2005-12-22 06:53:06 as ** along with 7 people and 4 groups ana aalibes thaliana okarsligil duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • CASP6 data processing and automatic evaluation at the protein structure prediction center.
    Proteins (26 September 2005)
    by Andriy Kryshtafovych, Maciej Milostan, Lukasz Szajkowski, Pawel Daniluk, Krzysztof Fidelis
    posted to cafasp casp model_evaluation by marcius on 2005-10-22 08:59:49 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Free modeling with Rosetta in CASP6.
    Proteins (26 September 2005)
    by Philip Bradley, Lars Malmström, Bin Qian, Jack Schonbrun, Dylan Chivian, David E E Kim, Jens Meiler, Kira M S M Misura, David Baker
    posted to ab-initio cafasp casp structure_prediction by marcius on 2005-10-22 08:58:20 as *** along with 4 people and 2 groups jwm dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
  • Evaluation of domain prediction in CASP6.
    Proteins (26 September 2005)
    by Chin-Hsien H Tai, Woei-Jyh J Lee, James J J Vincent, Byungkook Lee
    posted to cafasp casp model_evaluation protein_domains by marcius on 2005-10-22 09:08:12 as **** along with 1 person and 2 groups nigham BioinfoCIPF SGU-CIPF
  • Assessment of fold recognition predictions in CASP6.
    Proteins (26 September 2005)
    by Guoli Wang, Yumi Jin, Roland L L Dunbrack
    posted to bioinformatics cafasp casp model_evaluation protein_threading by marcius on 2005-10-22 09:13:36 as ** along with 3 people and 2 groups nigham schuylrp janasont BioinfoCIPF SGU-CIPF
  • SAM-T04: what's new in protein-structure prediction for CASP6.
    Proteins (26 September 2005)
    by Kevin Karplus, Sol Katzman, George Shackleford, Martina Koeva, Jenny Draper, Bret Barnes, Marcia Soriano, Richard Hughey
    posted to cafasp casp sequence_alignment structure_prediction by marcius on 2005-10-22 09:10:38 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Reliability of assessment of protein structure prediction methods.
    Structure (Camb), Vol. 10, No. 3. (March 2002), pp. 435-440.
    by MA Marti-Renom, MS Madhusudhan, A Fiser, B Rost, A Sali
    posted to cafasp casp by marcius on 2005-10-20 21:34:30 as read along with 1 person and 2 groups dgront BioinfoCIPF SGU-CIPF
  • Assessment of CASP6 predictions for new and nearly new fold targets.
    Proteins (26 September 2005)
    by James J J Vincent, Chin-Hsien H Tai, B K K Sathyanarayana, Byungkook Lee
    posted to ab-initio cafasp casp model_evaluation structure_prediction by marcius on 2005-10-22 09:12:32 as ** along with 1 person and 2 groups nigham BioinfoCIPF SGU-CIPF
  • A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
    Curr Opin Struct Biol (3 June 2005)
    by John Moult
    posted to cafasp casp model_evaluation review by marcius on 2006-01-13 23:59:34 as ** along with 9 people and 2 groups ujh nigham thaliana warlock6x3 ffranca j3xucite dgront granujilla mingzhi BioinfoCIPF SGU-CIPF
  • Empirical limits for template-based protein structure prediction: the CASP5 example.
    FEBS Lett, Vol. 579, No. 5. (14 February 2005), pp. 1203-1207.
    by B Contreras-Moreira, I Ezkurdia, ML Tress, A Valencia
    posted to bioinformatics cafasp casp protein_structure by marcius on 2005-10-22 00:54:18 as read along with 3 people and 2 groups karbak iakes magia215 BioinfoCIPF SGU-CIPF
  • MaxSub: an automated measure for the assessment of protein structure prediction quality.
    Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785.
    by N Siew, A Elofsson, L Rychlewski, D Fischer
    posted to bioinformatics cafasp casp model_evaluation by marcius on 2005-10-21 21:01:19 as ** along with 4 people and 2 groups granujilla BragilMassoud dgront biehl BioinfoCIPF SGU-CIPF
  • Protein structure prediction in CASP6 using CHIMERA and FAMS.
    Proteins (26 September 2005)
    by Mayuko Takeda-Shitaka, Genki Terashi, Daisuke Takaya, Kazuhiko Kanou, Mitsuo Iwadate, Hideaki Umeyama
    posted to bioinformatics cafasp casp sequence_alignment structure_prediction by marcius on 2005-10-22 09:11:43 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Assessment of predictions submitted for the CASP6 comparative modelling category.
    Proteins (26 September 2005)
    by Michael Tress, Iakes Ezkurdia, Osvaldo Graña, Gonzalo López, Alfonso Valencia
    posted to cafasp casp comparative_modeling protein_structure structure_prediction by marcius on 2005-10-22 08:59:31 as **** along with 3 people and 2 groups nigham ffranca magia215 BioinfoCIPF SGU-CIPF
  • SPARKS 2 and SP(3) servers in CASP 6.
    Proteins (26 September 2005)
    by Hongyi Zhou, Yaoqi Zhou
    posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius on 2005-10-22 08:56:27 as *** along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
  • Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM.
    Proteins (26 September 2005)
    by David E E Kim, Dylan Chivian, Lars Malmström, David Baker
    posted to cafasp casp protein_domains ab-initio by marcius on 2005-10-22 09:07:40 as *** along with 1 person and 2 groups jwm BioinfoCIPF SGU-CIPF
  • Protein loop structure prediction with flexible stem geometries.
    Proteins (12 October 2005)
    by M Mönnigmann, C A A Floudas
    posted to cafasp casp loop_modeling protein_structure structure_prediction by marcius on 2005-10-22 09:06:47 as ** along with 1 person and 2 groups vavi BioinfoCIPF SGU-CIPF
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