新規登録 | ログイン | FAQ      [?] 

タグ: bio-tools [50 articles]

Recent papers classified by the tag bio-tools.
  • Compilation of human mtDNA control region sequences
    Nucl. Acids Res., Vol. 26, No. 1. (1 January 1998), pp. 126-129.
    by O Handt, S Meyer, A von Haeseler
    posted to bio-tools database hvr1 hvr2 mtdna by ryanraaum on 2007-10-10 21:51:02 as **
  • Bioinformatics software for biologists in the genomics era
    Bioinformatics, Vol. 23, No. 14. (1 July 2007), pp. 1713-1717.
    by Sudhir Kumar, Joel Dudley
    posted to bioinformatics bio-tools review software by ryanraaum on 2007-08-08 15:43:30 as ** along with 5 people jyuh cjeans sgoetz asddd Jporci
  • CTree: comparison of clusters between phylogenetic trees made easy
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2952-2953.
    by John Archer, David L Robertson
    posted to bio-tools methods statistics tree by ryanraaum on 2007-11-20 14:23:23 as **
  • AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Bioinformatics, Vol. 23, No. 18. (27 July 2007), pp. 2385-2390.
    by Hongfang Liu, Barry RR Zeeberg, Qu Gang, Gunes, Alessandro Ferrucci, Ari Kahn, Michael CC Ryan, Antej Nuhanovic, Peter JJ Munson, William CC Reinhold, David WW Kane, John NN Weinstein
    posted to affymetrix bio-tools correction methods by ryanraaum on 2007-09-17 14:18:46 as ** along with 7 people giovenko jyuh jfr ghattem heliopais Montrachet bertelsen
  • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
    Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1596-1599.
    by Koichiro Tamura, Joel Dudley, Masatoshi Nei, Sudhir Kumar
    posted to bio-tools by ryanraaum on 2007-08-02 19:57:58 as ** along with 6 people BioNica usagi-kirin natstreet spinaltap526 bandrewfox sanchezbuelna
  • An extensible spatial and temporal epidemiological modelling system
    International Journal of Health Geographics, Vol. 5, No. 1. (2006), 4.
    by Daniel Ford, James Kaufman, Iris Eiron
    posted to bio-tools epidemiology gis modeling by ryanraaum on 2007-07-18 17:11:17 as ** along with 1 person ianturton
  • GWAsimulator: a rapid whole-genome simulation program
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 140-142.
    by Chun Li, Mingyao Li
    posted to association bio-tools simulation to-get to-review wga by ryanraaum on 2008-01-10 18:45:45 as ** along with 2 people jyuh mailund
  • msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
    BMC Bioinformatics, Vol. 8 (26 July 2007), 268.
    by Michael J Hickerson, Eli Stahl, Naoki Takebayashi
    posted to abc bio-tools coalescent update-pdf-when-final by ryanraaum on 2007-07-26 21:40:19 as ** along with 1 person Xavier
  • simuPOP: a forward-time population genetics simulation environment
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3686-3687.
    by Bo Peng, Marek Kimmel
    posted to bio-tools forward-simulation methods simulation by ryanraaum on 2007-09-06 20:58:17 as **
  • Direct maximum parsimony phylogeny reconstruction from genotype data
    BMC Bioinformatics, Vol. 8, No. 1. (2007), 472.
    by Srinath Sridhar, Fumei Lam, Guy Blelloch, R Ravi, Russell Schwartz
    posted to bio-tools parsimony phylogeny to-update by ryanraaum on 2007-12-05 17:53:23 as **
  • Generating samples under a Wright-Fisher neutral model of genetic variation
    Bioinformatics, Vol. 18, No. 2. (1 February 2002), pp. 337-338.
    by Richard R Hudson
    posted to bio-tools coalescent simulation by ryanraaum on 2007-10-09 16:33:10 as ** along with 3 people jmeppley djkt vplagnol
  • The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2954-2956.
    by Victor Soria-Carrasco, Gerard Talavera, Javier Igea, Jose Castresana
    posted to bio-tools methods statistics tree by ryanraaum on 2007-11-20 14:24:27 as **
  • GENOME: a rapid coalescent-based whole genome simulator.
    Bioinformatics, Vol. 23, No. 12. (25 April 2007), pp. 1565-1567.
    by Liming Liang, Sebastian Zöllner, Gonçalo RR Abecasis
    posted to bio-tools coalescent simulation by ryanraaum on 2007-07-08 17:01:49 as read along with 1 person and 1 group renewang Bioinformatics
  • Clustal W and Clustal X version 2.0
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948.
    by MA Larkin, G Blackshields, NP Brown, R Chenna, PA Mcgettigan, H Mcwilliam, F Valentin, IM Wallace, A Wilm, R Lopez, JD Thompson, TJ Gibson, DG Higgins
    posted to bio-tools multiple-alignment by ryanraaum on 2007-11-20 14:22:28 as ** along with 6 people cassj lisa1 bmaust alanrw mschofie marck
  • IBD (Isolation by Distance): A Program for Analyses of Isolation by Distance
    J Hered, Vol. 93, No. 2. (1 March 2002), pp. 153-154.
    by AJ Bohonak
    posted to bio-tools ibd by ryanraaum on 2007-11-01 15:08:34 as **
  • Phylocomposer and phylodirector: analysis and visualization of transducer indel models
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3263-3264.
    by Ian Holmes
    posted to bio-tools indel phylogeny by ryanraaum on 2007-11-27 12:54:24 as ** along with 4 people druvus balicea djkt smbe2008
  • The evolutionary forest algorithm
    Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1962-1968.
    by Scotland C Leman, Marcy K Uyenoyama, Michael Lavine, Yuguo Chen
    posted to bio-tools coalescent im methods monte-carlo summary-statistics by ryanraaum on 2007-08-15 14:32:52 as ** along with 1 person djkt
  • PyCogent: a toolkit for making sense from sequence
    Genome Biology, Vol. 8 (21 August 2007), R171.
    by Rob Knight, Peter Maxwell, Amanda Birmingham, Jason Carnes, Gregory J Caporaso, Brett C Easton, Michael Eaton, Micah Hamady, Helen Lindsay, Zongzhi Liu, Catherine Lozupone, Daniel Mcdonald, Michael Robeson, Raymond Sammut, Sandra Smit, Matthew J Wakefield, Jeremy Widmann, Shandy Wikman, Stephanie Wilson, Hua Ying, Gavin A Huttley
    posted to bio-tools python update-when-final by ryanraaum on 2007-09-14 13:14:08 as **
  • SeqAn - An efficient, generic C++ library for sequence analysis
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert
    posted to bio-tools to-update by ryanraaum on 2008-01-10 16:03:38 as ** along with 8 people jyuh chad_davis laughcry nklee barriot mailund magusina reyez
  • A congruence index for testing topological similarity between trees
    Bioinformatics, Vol. 23, No. 23. (12 October 2007), pp. 3119-3124.
    by Damien M de Vienne, Tatiana Giraud, Olivier C Martin
    posted to bio-tools congruence tree tree-tools by ryanraaum on 2007-11-27 12:50:30 as ** along with 1 person cjeans
  • ProServer: a simple, extensible Perl DAS server
    Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1568-1570.
    by Robert D Finn, James W Stalker, David K Jackson, Eugene Kulesha, Jody Clements, Roger Pettett
    posted to bio-tools das perl by ryanraaum on 2007-07-08 17:20:58 as read along with 1 person jyuh
  • Design and implementation of a generalized laboratory data model
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Michael Wendl, Scott Smith, Craig Pohl, David Dooling, Asif Chinwalla, Kevin Crouse, Todd Hepler, Shin Leong, Lynn Carmichael, Mike Nhan, Benjamin Oberkfell, Elaine Mardis, Ladeana Hillier, Richard Wilson
    posted to bio-tools database lims schema update-when-final by ryanraaum on 2007-09-26 21:06:10 as **
  • libsequence: a C++ class library for evolutionary genetic analysis
    Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2325-2327.
    by Kevin Thornton
    posted to bio-tools by ryanraaum on 2007-10-10 17:07:44 as **
  • Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process
    BMC Bioinformatics, Vol. 8 (23 October 2007), 409.
    by Marjo V Smith, Chris R Miller, Michael Kohn, Nigel J Walker, Chris J Portier
    posted to bio-tools by ryanraaum on 2007-10-24 12:59:26 as ** along with 1 person jyuh
  • Sequence-Level Population Simulations Over Large Genomic Regions
    Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1725-1731.
    by Clive J Hoggart, Marc Chadeau-Hyam, Taane G Clark, Riccardo Lampariello, John C Whittaker, Maria De Iorio, David J Balding
    posted to bio-tools forward-simulation simulation by ryanraaum on 2007-11-26 21:16:49 as ** along with 1 person jyuh
  • Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    Comput. Appl. Biosci., Vol. 13, No. 3. (1 June 1997), pp. 235-238.
    by Andrew Rambaut, Nicholas C Grass
    posted to bio-tools sequence simulation by ryanraaum on 2007-10-09 16:41:24 as ** along with 1 person jmeppley
  • Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Miguel Arenas, David Posada
    posted to bio-tools coalescent simulation update-when-final by ryanraaum on 2007-11-20 18:11:40 as ** along with 1 person stajich
  • QPRIMER: A Quick Web-based Application for Designing Conserved PCR Primers from Multigenome Alignments.
    Bioinformatics (28 June 2007)
    by Namshin Kim, Christopher Lee
    posted to alignment bioinformatics bio-tools primer-design python by ryanraaum on 2007-09-11 13:35:16 as ** along with 4 people and 1 group jyuh sebastien_vigneau grahamc asddd ParkinsonLab_at_MaRS
  • Comparison of Bayesian and maximum-likelihood inference of population genetic parameters
    Bioinformatics, Vol. 22, No. 3. (1 February 2006), pp. 341-345.
    by Peter Beerli
    posted to bayesian bio-tools coalescent gene-flow likelihood migration by ryanraaum on 2007-07-20 12:52:13 as ** along with 4 people and 1 group Borelli spavey beerli pcarbo FAB-lab
  • Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants
    BMC Bioinformatics, Vol. 8, No. 1. (2007), 278.
    by Erin Price, John I Bamber, Venugopal Thiruvenkataswamy, Flavia Huygens, Philip Giffard
    posted to bio-tools diagnosis update-pdf-when-final by ryanraaum on 2007-08-01 14:39:07 as **
  • PAML 4: Phylogenetic Analysis by Maximum Likelihood
    Mol Biol Evol (4 May 2007), msm088.
    by Ziheng Yang
    posted to bio-tools by ryanraaum on 2007-08-02 19:57:15 as ** along with 9 people and 1 group druvus operon akifumi hdopazo BioNica stajich RamuAnandakrishnan CharlesM Ema Berkeley Mycology
  • A Markov Chain Monte Carlo Approach for Joint Inference of Population Structure and Inbreeding Rates From Multilocus Genotype Data
    Genetics, Vol. 176, No. 3. (1 July 2007), pp. 1635-1651.
    by Hong Gao, Scott Williamson, Carlos D Bustamante
    posted to bayesian bio-tools inbreeding mcmc methods multilocus population-structure selfing simulation structure by ryanraaum on 2007-07-20 13:23:34 as ** along with 2 people lp2 roys
  • Generalized analysis of molecular variance.
    PLoS Genet, Vol. 3, No. 4. (6 April 2007)
    by CM Nievergelt, O Libiger, NJ Schork
    posted to amova arlequin bio-tools genetic-diversity methods statistics by ryanraaum on 2007-08-14 18:11:03 as ** along with 4 people and 1 group jyuh stevanspringer bpb dmc FAB-lab
  • Isolation by distance, web service
    BMC Genetics, Vol. 6, No. 1. (2005), 13.
    by Jeffrey Jensen, Andrew Bohonak, Scott Kelley
    posted to bio-tools ibd by ryanraaum on 2007-11-01 15:29:29 as **
  • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    BMC Bioinformatics, Vol. 8 (19 November 2007), 456.
    by Christopher J Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga
    posted to bio-tools to-get by ryanraaum on 2007-11-20 12:52:23 as ** along with 9 people and 1 group jyuh jfr dullhunk neils mircea srp33 selatham megraw chad_davis NCCT Lab Reading Group
  • CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    Bioinformatics, Vol. 23, No. 14. (1 July 2007), pp. 1801-1806.
    by Mattias Jakobsson, Noah A Rosenberg
    posted to bio-tools population-structure structure by ryanraaum on 2007-08-08 15:42:28 as **
  • GEIGER: investigating evolutionary radiations
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 129-131.
    by Luke J Harmon, Jason T Weir, Chad D Brock, Richard E Glor, Wendell Challenger
    posted to bio-tools r-tools simulation to-get to-review by ryanraaum on 2008-01-10 18:47:47 as **
  • pIPHULA parallel inference of population parameters using a likelihood approach
    Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2636-2637.
    by Heiko A Schmidt, Arndt von Haeseler, Jutta Buschbom
    posted to bioinformatics bio-tools statistics by ryanraaum on 2007-10-29 12:15:51 as **
  • Integrating sequence and structural biology with DAS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreas Prlic, Thomas Down, Eugene Kulesha, Robert Finn, Andreas Kahari, Tim Hubbard
    posted to bioinformatics bio-tools das semantic-web update-when-final by ryanraaum on 2007-09-12 17:28:44 as ** along with 4 people jyuh dullhunk massivemayhem niallhaslam
  • Genomorama: genome visualization and analysis
    BMC Bioinformatics, Vol. 8 (14 June 2007), 204.
    by Jason D Gans, Murray Wolinsky
    posted to bioinformatics bio-tools genome genomics by asddd on 2008-02-28 22:24:35 as ** along with 2 people jyuh mikejen
  • Biotool2Web: creating simple Web interfaces for bioinformatics applications.
    Appl Bioinformatics, Vol. 5, No. 1. (2006), pp. 63-66.
    by M Shahid, I Alam, G Fuellen
    posted to bioinformatics bio-tools internet by asddd on 2008-02-28 21:59:29 as ** along with 2 people jyuh moborg
  • EnsMart: A Generic System for Fast and Flexible Access to Biological Data
    Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 160-169.
    by Arek Kasprzyk, Damian Keefe, Damian Smedley, Darin London, William Spooner, Craig Melsopp, Martin Hammond, Philippe Rocca-Serra, Tony Cox, Ewan Birney
    posted to bioinformatics bio-tools data-mining ensembl genome genomics java perl software by asddd on 2008-02-28 22:18:32 as ** along with 2 people incovoma kynn
  • PhyloPat: phylogenetic pattern analysis of eukaryotic genes
    BMC Bioinformatics, Vol. 7 (01 September 2006), 398.
    by Tim Hulsen, Jacob de Vlieg, Peter MA Groenen
    posted to bioinformatics bio-tools gene phylogenetic by asddd on 2008-02-28 22:20:02 as ** along with 1 person cjeans
  • Shopping in the genome market with EnsMart.
    Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 292-296.
    by D Gilbert
    posted to bioinformatics bio-tools data-mining ensembl genome genomics java perl software by asddd on 2008-02-28 22:20:54 as ** along with 1 person incovoma
  • GeneNotes--a novel information management software for biologists.
    BMC Bioinformatics, Vol. 6 (2005)
    by P Hong, WH Wong
    posted to bioinformatics bio-tools data-mining gene genome interface internet by asddd on 2008-02-28 22:03:59 as **
  • Pegasys: software for executing and integrating analyses of biological sequences.
    BMC Bioinformatics, Vol. 5 (19 April 2004)
    by SP Shah, DY He, JN Sawkins, JC Druce, G Quon, D Lett, GX Zheng, T Xu, BF Ouellette
    posted to bioinformatics bio-tools combinatorial comparative genomics sequences software by asddd on 2007-07-10 01:16:48 as ** along with 3 people pansapiens eweaver moborg
  • An object-oriented programming system for the integration of internet-based bioinformatics resources.
    Appl Bioinformatics, Vol. 5, No. 1. (2006), pp. 29-39.
    by A Beveridge
    posted to bioinformatics bio-tools data-mining gene genome interface internet oop progamming by asddd on 2008-02-28 22:06:41 as ** along with 1 person jyuh
  • Taverna: a tool for building and running workflows of services.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by D Hull, K Wolstencroft, R Stevens, C Goble, MR Pocock, P Li, T Oinn
    posted to bioinformatics bio-tools by asddd on 2008-02-28 22:13:50 as ** along with 6 people and 1 group druvus moborg wnpx mroos dullhunk alanrw AID
  • BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3439-3440.
    by Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber
    posted to bioinformatics bio-tools data-mining ensembl genome genomics java perl software by asddd on 2008-02-28 21:46:28 as ** along with 4 people wenhui dullhunk natstreet jyuh
  • MICA: desktop software for comprehensive searching of DNA databases
    BMC Bioinformatics, Vol. 7 (03 October 2006), 427.
    by William A Stokes, Benjamin S Glick
    posted to bioinformatics bio-tools databases data-mining search by asddd on 2008-02-28 22:22:47 as ** along with 1 person jyuh
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/tag/bio-tools

    RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.