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タグ: bacterial [176 articles]

Recent papers classified by the tag bacterial.
  • RNA visualization in live bacterial cells using fluorescent protein complementation
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 421-427.
    by Maria Valencia-Burton, Ron M Mccullough, Charles R Cantor, Natalia E Broude
    posted to bacterial fluorescent protein rna visualization by zwang on 2007-04-27 12:18:51 as **** along with 4 people austin medelyan jyuh madhadron
  • Genome Transplantation in Bacteria: Changing One Species to Another
    Science (28 June 2007), 1144622.
    by Carole Lartigue, John I Glass, Nina Alperovich, Rembert Pieper, Prashanth P Parmar, Hutchison, Hamilton O Smith, Craig J Venter
    posted to bacterial genome specy by zwang on 2007-08-09 15:36:57 as ** along with 8 people and 1 group jyuh operon madhadron yeastyboy grahamc cabbagezs gulsacan westoll Bioinformatics
  • Adaptive Mutations in Bacteria: High Rate and Small Effects
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 813-815.
    by Lilia Perfeito, Lisete Fernandes, Catarina Mota, Isabel Gordo
    posted to bacterial genome mutation by zwang on 2007-08-15 03:22:01 as * along with 2 people and 1 group stevanspringer operon FAB-lab
  • The protein network of bacterial motility
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Seesandra V Rajagopala, Bjorn Titz, Johannes Goll, Jodi R Parrish, Katrin Wohlbold, Matthew T Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L Finley, Peter Uetz
    posted to bacterial network protein by zwang on 2007-08-03 01:47:02 as ** along with 6 people and 4 groups cerca carlk aswin grahamc jmrivort Pao-Yang G-quadruplex Supramolecular ParkinsonLab_at_MaRS OPIG
  • Recombination and the Nature of Bacterial Speciation
    Science, Vol. 315, No. 5811. (26 January 2007), pp. 476-480.
    by Christophe Fraser, William P Hanage, Brian G Spratt
    posted to bacterial speciation by zwang on 2007-04-12 10:37:36 as ** along with 3 people dayjm jmeppley aswin
  • Construction of consecutive deletions of the Escherichia coli chromosome
    Mol Syst Biol, Vol. 3 (2007)
    by Jun-Ichi Kato, Masayuki Hashimoto
    posted to bacterial chromosome deletion ecoli by zwang on 2007-08-15 03:07:11 as *
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacterial gene ortholog regulation transcription by zwang on 2007-11-02 08:03:07 as ** along with 6 people and 3 groups dpollard dquest djkt cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
  • High-throughput cloning and expression in recalcitrant bacteria
    Nat Meth, Vol. 4, No. 9. (2007), pp. 705-707.
    by Eric R Geertsma, Bert Poolman
    posted to bacterial expression protein by zwang on 2007-08-31 16:21:56 as * along with 2 people Yanno jyuh
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to bacterial insilico ncrna regulatory rna by zwang on 2007-08-29 02:30:33 as * along with 4 people sebastien_vigneau lp2 cabbagezs blobbybirdman
  • Inhibition of Escherichia coli RNase P by oligonucleotide directed misfolding of RNA
    RNA, Vol. 9, No. 12. (1 December 2003), pp. 1437-1445.
    by Jessica L Childs, Alex W Poole, Douglas H Turner
    posted to bacterial folding rna rnasep by zwang on 2008-03-11 05:35:11 as ****
  • Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
    Science (30 August 2007), 1142490.
    by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren
    posted to bacterial eukaryota evolution gene genome lgt by zwang on 2007-10-11 02:03:35 as **** along with 7 people and 2 groups dpollard bluto emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab
  • Phylogenetic exploration of bacterial genomic rearrangements
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1172-1174.
    by Romain Fremez, Thomas Faraut, Gwennaele Fichant, Jerome Gouzy, Yves Quentin
    posted to bacterial genome phylogeny by zwang on 2007-05-10 08:13:26 as ** along with 1 person operon
  • Inhibition of expression of virulence genes of Yersinia pestis in Escherichia coli by external guide sequences and RNase P
    RNA (20 June 2008), rna.1120508.
    by Jae-Hyeong Ko, Mina Izadjoo, Sidney Altman
    posted to rnasep expression bacterial by zwang on 2008-06-25 04:44:36 as ****
  • InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
    BMC Bioinformatics, Vol. 8 (26 October 2007), 414.
    by Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
    posted to bacterial genome interaction prediction protein by zwang on 2007-10-29 13:11:19 as ** along with 2 people and 1 group tmmurali iris_2001 csb_journal_club_public
  • Genome Analysis of Minibacterium massiliensis Highlights the Convergent Evolution of Water-Living Bacteria
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e138.
    by Stéphane Audic, Catherine Robert, Bernard Campagna, Hugues Parinello, Jean-Michel Claverie, Didier Raoult, Michel Drancourt
    posted to bacterial evolution genome by zwang on 2007-09-03 15:16:47 as *
  • Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay
    RNA, Vol. 10, No. 10. (1 October 2004), pp. 1595-1608.
    by Jeremy J Day-Storms, S Niranjanakumari, Carol A Fierke
    posted to bacterial interaction magnetic protein rna rnasep by zwang on 2008-03-21 07:55:58 as *****
  • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
    Mol Syst Biol, Vol. 3 (10 July 2007)
    by Robert Schuetz, Lars Kuepfer, Uwe Sauer
    posted to bacterial prediction systematic by zwang on 2007-07-11 19:28:02 as ** along with 4 people and 1 group michaelbarton alexg fishtank Ema Bioinformatics
  • Structural basis for transcription elongation by bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Anna Perederina, Tahir H Tahirov, Irina Artsimovitch
    posted to bacterial rna structure transcription by zwang on 2007-08-28 03:59:15 as * along with 2 people margaritis Jporci
  • Structural basis for substrate loading in bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick
    posted to bacterial rna structure by zwang on 2007-08-28 03:58:36 as * along with 2 people margaritis Jporci
  • Computer-aided rational design of the phosphotransferase system for enhanced glucose uptake in Escherichia coli
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Yousuke Nishio, Yoshihiro Usuda, Kazuhiko Matsui, Hiroyuki Kurata
    posted to bacterial design insilico by zwang on 2008-01-15 16:39:00 as *** along with 1 person renatomilani
  • Operons in Escherichia coli: genomic analyses and predictions.
    Proc Natl Acad Sci U S A, Vol. 97, No. 12. (6 June 2000), pp. 6652-6657.
    by H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides
    posted to bacterial coli escherichia gene operon structure by vladimirov on 2007-10-11 13:29:47 as ** along with 2 people ziquje kaarsinogen
  • Chemosensing in Escherichia coli: Two regimes of two-state receptors
    Proceedings of the National Academy of Sciences, Vol. 103, No. 6. (7 February 2006), pp. 1786-1791.
    by Juan E Keymer, Robert G Endres, Monica Skoge, Yigal Meir, Ned S Wingreen
    posted to bacterial chemotaxis escherichia mwc receptor by vladimirov on 2008-01-04 11:41:01 as read
  • Noise in gene expression as the source of non-genetic individuality in the chemotactic response of Escherichia coli
    FEBS Letters, Vol. 550, No. 1-3. (28 August 2003), pp. 135-138.
    by MD Levin
    posted to adaptation bacterial chemotaxis individuality noise by vladimirov on 2008-03-03 12:38:47 as read
  • An allosteric model for heterogeneous receptor complexes: Understanding bacterial chemotaxis responses to multiple stimuli
    Proceedings of the National Academy of Sciences, Vol. 102, No. 48. (29 November 2005), pp. 17354-17359.
    by Bernardo A Mello, Yuhai Tu
    posted to bacterial chemotaxis coli escherichia mwc receptor simulation by vladimirov on 2008-01-25 14:50:49 as read
  • Quantitative studies of bacterial chemotaxis and microbial population dynamics
    Microbial Ecology, Vol. 22, No. 1. (5 December 1991), pp. 175-185.
    by Douglas Lauffenburger
    posted to bacterial chemotaxis competition ecology population by vladimirov on 2008-04-16 13:50:46 as read
  • Computer analysis of the binding reactions leading to a transmembrane receptor-linked multiprotein complex involved in bacterial chemotaxis.
    Molecular biology of the cell, Vol. 6, No. 10. (October 1995), pp. 1367-1380.
    by D Bray, RB Bourret
    posted to model chemotaxis bct bacterial by vladimirov on 2008-06-18 16:07:01 as read
  • Transient Response to Chemotactic Stimuli in Escherichia coli
    Proceedings of the National Academy of Sciences, Vol. 72, No. 8. (15 August 1975), pp. 3235-3239.
    by Howard C Berg, PM Tedesco
    posted to bacterial chemotaxis escherichia response transient by vladimirov on 2008-02-10 12:08:55 as read
  • Simulating Chemosensory Responses of Marine Microorganisms
    Limnology and Oceanography, Vol. 32, No. 6. (1987), pp. 1253-1266.
    by George A Jackson
    posted to bacterial chemotaxis ecology monte-carlo simulation by vladimirov on 2007-10-30 19:17:17 as **
  • The bacterial chemotactic response reflects a compromise between transient and steady-state behavior.
    Proc Natl Acad Sci U S A (20 June 2005)
    by Damon A A Clark, Lars C C Grant
    posted to bacterial chemotaxis response by vladimirov on 2007-10-29 15:26:34 as ** along with 1 person rklancer
  • Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.
    J Bacteriol, Vol. 187, No. 1. (January 2005), pp. 45-53.
    by K Lipkow, SS Andrews, D Bray
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 12:44:24 as ** along with 5 people and 2 groups RebeccaHamer csanford chrn roland_ewald mattis23 dIEMoSIRIS MoSi-Rostock
  • Optimal Noise Filtering in the Chemotactic Response of Escherichia coli
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e154.
    by Burton W Andrews, Tau-Mu Yi, Pablo A Iglesias
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 11:14:18 as ** along with 1 person bayesian
  • Origins of individual swimming behavior in bacteria.
    Biophys J, Vol. 74, No. 1. (January 1998), pp. 175-181.
    by MD Levin, CJ Morton-Firth, WN Abouhamad, RB Bourret, D Bray
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 11:12:42 as ** along with 1 person chrn
  • Predicting Temporal Fluctuations in an Intracellular Signalling Pathway
    Journal of Theoretical Biology (May 1998), pp. 117-128.
    by CJ Morton-Firth, D Bray
    posted to monte-carlo chemotaxis bacterial by vladimirov on 2008-06-18 11:19:10 as read
  • Real-time imaging of fluorescent flagellar filaments.
    J Bacteriol, Vol. 182, No. 10. (May 2000), pp. 2793-2801.
    by L Turner, WS Ryu, HC Berg
    posted to bacterial chemotaxis flagellar motor real-time run tumble by vladimirov on 2008-01-31 13:33:06 as read along with 1 person chrn
  • On Torque and Tumbling in Swimming Escherichia coli
    J. Bacteriol., Vol. 189, No. 5. (1 March 2007), pp. 1756-1764.
    by Nicholas C Darnton, Linda Turner, Svetlana Rojevsky, Howard C Berg
    posted to bacterial chemotaxis coli escherichia motor by vladimirov on 2007-10-09 14:37:38 as **
  • Bacterial ABC transporters of amino acids.
    Res Microbiol, Vol. 152, No. 3-4. (y 2001), pp. 259-270.
    by AH Hosie, PS Poole
    posted to abc acids amino bacterial transporters by steinia on 2005-03-09 22:02:15 as ***
  • Role of phosphatidylglycerols in the stability of bacterial membranes
    Biochimie, Vol. 90 (2008), pp. 930-938.
    by Wei Zhao, Tomasz Rog, Andrey A Gurtovenko, Ilpo Vattulainen, Mikko Karttunen
    posted to bacterial pope popg by softsimu on 2008-04-01 21:21:28 as **
  • Herpesvirus latency confers symbiotic protection from bacterial infection
    Nature, Vol. 447, No. 7142., pp. 326-329.
    by Erik S Barton, Douglas W White, Jason S Cathelyn, Kelly A Brett-Mcclellan, Michael Engle, Michael S Diamond, Virginia L Miller, Herbert W Virgin
    posted to bacterial herpesvirus infection by Schmidtc on 2007-05-31 15:30:01 as **
  • Direct visualisation and quantification of cellular cytotoxicity using two colour fluorescence
    Journal of Immunological Methods, Vol. 156, No. 1. (25 November 1992), pp. 47-54.
    by Bart-Jan Kroesen, G Mesander, Ter, TH The, L de Leij
    posted to bacterial staining by perpetuale on 2007-07-18 14:33:50 as ** along with 1 group Kopelman_Group
  • Use of fluorescent probes to assess physiological functions of bacteria at single-cell level.
    Microbes Infect, Vol. 2, No. 12. (October 2000), pp. 1523-1535.
    by F Joux, P Lebaron
    posted to bacterial growth by perpetuale on 2007-07-18 13:44:03 as ** along with 1 group Kopelman_Group
  • `Growth of bacterial cultures' 50 years on: towards an uncertainty principle instead of constants in bacterial growth kinetics
    Research in Microbiology, Vol. 150, No. 7. (September 1999), pp. 431-438.
    by Thomas Ferenci
    posted to bacterial growth by perpetuale on 2008-04-04 13:30:27 as ** along with 1 person nsamways
  • Microbiological safety of natural mineral water
    FEMS Microbiology Reviews, Vol. 26, No. 2. (2002), pp. 207-222.
    by Henri Leclerc, Annick Moreau
    posted to bacterial contamination by perpetuale on 2008-04-04 13:15:21 as **
  • Hungry bacteria - definition and properties of a nutritional state
    Environmental Microbiology, Vol. 3, No. 10. (2001), pp. 605-611.
    by Thomas Ferenci
    posted to bacterial growth by perpetuale on 2008-04-04 13:11:38 as **
  • Hydrodynamics of bacterial colonies: phase diagrams.
    Chaos, Vol. 14, No. 3. (September 2004), pp. 562-570.
    by J Lega, T Passot
    posted to bacterial growth by perpetuale on 2008-04-04 13:03:51 as ** along with 1 person chrn
  • Modeling of the Bacterial Growth Curve.
    Appl Environ Microbiol, Vol. 56, No. 6. (June 1990), pp. 1875-1881.
    by M H H Zwietering, I Jongenburger, F M M Rombouts, K van 't Riet
    posted to bacterial growth by perpetuale on 2008-04-04 12:57:41 as ** along with 1 person cryomatth
  • From the Cover: The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms
    Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 18217-18222.
    by Colin J Ingham, Ad Sprenkels, Johan Bomer, Douwe Molenaar, Albert van den Berg, van Hylckama, Willem M de Vos
    posted to bacterial growth by perpetuale on 2008-04-04 12:53:15 as ** along with 3 people madhadron dbougioukou ganesank55
  • BacSim, a simulator for individual-based modelling of bacterial colony growth.
    Microbiology, Vol. 144 ( Pt 12) (December 1998), pp. 3275-3287.
    by JU Kreft, G Booth, JW Wimpenny
    posted to bacterial growth simulation by perpetuale on 2008-04-04 12:44:11 as ** along with 2 people chrn nsamways
  • Effectiveness of SYTOX Green Stain for Bacterial Viability Assessment
    Appl. Environ. Microbiol., Vol. 64, No. 7. (1 July 1998), pp. 2697-2700.
    by P Lebaron, P Catala, N Parthuisot
    posted to bacterial growth by perpetuale on 2007-07-18 03:06:27 as ** along with 1 group Kopelman_Group
  • Bacterial viability and antibiotic susceptibility testing with SYTOX green nucleic acid stain
    Appl. Environ. Microbiol., Vol. 63, No. 6. (1 June 1997), pp. 2421-2431.
    by Bl Roth, M Poot, St Yue, Pj Millard
    posted to bacterial growth by perpetuale on 2007-07-18 03:05:32 as ***** along with 1 person and 1 group silverplasma Kopelman_Group
  • Vigour, vitality and viability of microorganisms
    FEMS Microbiology Letters, Vol. 133, No. 1-2. (1995), pp. 1-7.
    by David Lloyd, Anthony J Hayes
    posted to bacterial growth by perpetuale on 2007-07-18 03:02:48 as ** along with 1 group Kopelman_Group
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