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タグ: b2gpaper2 [50 articles]

Recent papers classified by the tag b2gpaper2.
  • The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 365-370.
    by B Boeckmann, A Bairoch, R Apweiler, MC Blatter, A Estreicher, E Gasteiger, MJ Martin, K Michoud, C O'Donovan, I Phan, S Pilbout, M Schneider
    posted to b2gpaper2 database by sgoetz on 2007-09-06 11:45:03 as read along with 6 people chrn chad_davis dgront incovoma azazello PunkRock
  • Gene expression responses of European flounder (Platichthys flesus) to 17-[beta] estradiol
    Toxicology Letters, Vol. 168, No. 3. (5 February 2007), pp. 236-248.
    by Tim D Williams, Amer M Diab, Stephen G George, Victoria Sabine, James K Chipman
    posted to b2gpaper2 citation by sgoetz on 2007-09-10 14:40:08 as read
  • AgBase: a unified resource for functional analysis in agriculture
    Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D599-D603.
    by Mccarthy, M Fiona, Bridges, M Susan, Wang, Nan, Magee, G Bryce, Williams, W Paul, Luthe, S Dawn, Burgess, C Shane
    posted to annotation b2gpaper2 by sgoetz on 2007-10-05 10:05:17 as read
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to b2gpaper2 by sgoetz on 2007-11-07 16:54:44 as ** along with 11 people and 4 groups jmeppley AaronDarling azazello wenhan bluto vrich sanchezbuelna mcox mjetten jlgreen djkt anammox microbiology_nijmegen Green Lab iSEEM
  • Discovering gene expression patterns in Time Course Microarray Experiments by ANOVA-SCA.
    Bioinformatics (22 May 2007)
    by María José J Nueda, Ana Conesa, Johan A A Westerhuis, Huub C J C Hoefsloot, Age K K Smilde, Manuel Talón, Alberto Ferrer
    posted to anova b2gpaper2 expression by sgoetz on 2007-09-10 14:29:50 as read along with 4 people rvosa shigepong ghattem ugengma
  • JAFA: a protein function annotation meta-server.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by I Friedberg, T Harder, A Godzik
    posted to b2gpaper2 by sgoetz on 2007-10-11 09:48:38 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • A toolkit for addressing HCI issues in visual language environments
    Visual Languages and Human-Centric Computing, 2005 IEEE Symposium on (2005), pp. 145-152.
    by E Pietriga
    posted to b2gpaper2 visualization by sgoetz on 2007-09-10 14:41:46 as read
  • InterProScan: protein domains identifier.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by E Quevillon, V Silventoinen, S Pillai, N Harte, N Mulder, R Apweiler, R Lopez
    posted to annotation b2g b2gpaper2 by sgoetz on 2007-10-05 09:52:58 as read along with 2 people Cortel dullhunk
  • Semantic similarity measures as tools for exploring the gene ontology.
    Pac Symp Biocomput (2003), pp. 601-612.
    by PW Lord, RD Stevens, A Brass, CA Goble
    posted to b2gpaper2 semantic similarity by sgoetz on 2007-09-10 14:35:45 as read along with 8 people and 3 groups irenas andytseng CitoJam ejmeij gaudan josemblazquez macavity1g pmidford dbk-lab ilps LanguageModeling
  • Estimating the annotation error rate of curated GO database sequence annotations
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Craig Jones, Alfred Brown, Ute Baumann
    posted to annotation b2gpaper2 gene ontology by sgoetz on 2007-09-06 11:29:48 as read along with 3 people and 2 groups yas cdallett grahamc T_lab ParkinsonLab_at_MaRS
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to b2gpaper2 gene_ontology_tool by sgoetz on 2007-09-06 11:33:29 as read along with 9 people Cortel dragonrez macavity1g Garamonfok heliopais kristen yggdrasil ellakat marck
  • Biological profiling of gene groups utilizing Gene Ontology.
    Genome Inform, Vol. 16, No. 1. (2005), pp. 106-115.
    by N Blüthgen, K Brand, B Cajavec, M Swat, H Herzel, D Beule
    posted to b2gpaper2 blast2go gene_ontology_tool by sgoetz on 2007-09-24 12:50:26 as read
  • Identification of differential gene expression in in vitro FSH treated pig granulosa cells using suppression subtractive hybridization
    Reproductive Biology and Endocrinology, Vol. 4 (07 July 2006), 35.
    by A Bonnet, PO Frappart, P Dehais, G Tosser-Klopp, F Hatey
    posted to b2gpaper2 expression gene by sgoetz on 2007-09-06 11:23:48 as read
  • AgBase: a functional genomics resource for agriculture
    BMC Genomics, Vol. 7 (08 September 2006), 229.
    by Fiona M Mccarthy, Nan Wang, Bryce G Magee, Bindu Nanduri, Mark L Lawrence, Evelyn B Camon, Daniel G Barrell, David P Hill, Mary E Dolan, Paul W Williams, Dawn S Luthe, Susan M Bridges, Shane C Burgess
    posted to b2gpaper2 by sgoetz on 2007-10-05 10:01:55 as read along with 1 person Schmidtc
  • Automated methods of predicting the function of biological sequences using GO and BLAST.
    BMC Bioinformatics, Vol. 6, No. 1. (15 November 2005)
    by Craig E Jones, Ute Baumann, Alfred L Brown
    posted to b2gpaper2 gene_ontology_tool by sgoetz on 2007-04-20 14:31:42 as read along with 1 person jwortman
  • Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance
    BMC Genomics, Vol. 8 (25 January 2007), 31.
    by Javier Terol, Ana Conesa, Jose M Colmenero, Manuel Cercos, Francisco Tadeo, Javier Agusti, Enriqueta Alos, Fernando Andres, Guillermo Soler, Javier Brumos, Domingo J Iglesias, Stefan Goetz, Francisco Legaz, Xavier Argout, Brigitte Courtois, Patrick Ollitrault, Carole Dossat, Patrick Wincker, Raphael Morillon, Manuel Talon
    posted to b2gpaper2 blast2go citation citrus my_papers by sgoetz on 2007-09-06 11:40:31 as read
  • Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose.
    Environ Sci Technol, Vol. 40, No. 20. (15 October 2006), pp. 6479-6488.
    by TD Williams, AM Diab, SG George, RE Godfrey, V Sabine, A Conesa, SD Minchin, PC Watts, JK Chipman
    posted to b2gpaper2 blast2go by sgoetz on 2007-04-20 14:28:09 as read
  • Automated Gene Ontology annotation for anonymous sequence data.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3712-3715.
    by S Hennig, D Groth, H Lehrach
    posted to b2gpaper2 by sgoetz on 2007-11-07 17:42:31 as **
  • GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes.
    BMC Bioinformatics, Vol. 5 (18 November 2004)
    by DM Martin, M Berriman, GJ Barton
    posted to b2gpaper2 gene_ontology_tool by sgoetz on 2007-09-06 11:36:57 as read along with 3 people eckart_bindewald Sharpshoot bootsy
  • GOing from functional genomics to biological significance.
    Cytogenet Genome Res, Vol. 117, No. 1-4. (2007), pp. 278-287.
    by FM McCarthy, SM Bridges, SC Burgess
    posted to annotation b2g b2gpaper2 blast2go gene_ontology_tool by sgoetz on 2007-10-15 18:01:49 as read along with 1 person and 1 group grahamc Bioinformatics
  • Additional gene ontology structure for improved biological reasoning.
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2020-2027.
    by S Myhre, H Tveit, T Mollestad, A Laegreid
    posted to b2gpaper2 go by sgoetz on 2007-05-08 15:08:47 as read along with 3 people and 1 group ealloza leechuck AlexanderPico BioinfoCIPF
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    posted to b2gpaper2 kegg by sgoetz on 2007-10-29 13:50:33 as read along with 14 people namunet jyuh aalibes kuhn balajis alexg eweaver tny dullhunk michC frohike incovoma yggdrasil natstreet
  • Genome comparison using Gene Ontology (GO) with statistical testing
    BMC Bioinformatics, Vol. 7 (11 August 2006), 374.
    by Zhaotao Cai, Xizeng Mao, Songgang Li, Liping Wei
    posted to b2gpaper2 gene ontology by sgoetz on 2007-09-06 11:25:03 as read along with 1 person ndiaz
  • GOAnno: GO annotation based on multiple alignment
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2095-2096.
    by F Chalmel, A Lardenois, J Thompson, J Muller, J Sahel, T Leveillard, O Poch
    posted to annotation b2gpaper2 by sgoetz on 2007-09-06 11:26:11 as read
  • GoFigure: automated Gene Ontology annotation.
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2484-2485.
    by S Khan, G Situ, K Decker, CJ Schmidt
    posted to b2gpaper2 gene_ontology_tool by sgoetz on 2007-09-06 11:32:25 as read
  • GOblet: a platform for Gene Ontology annotation of anonymous sequence data.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by D Groth, H Lehrach, S Hennig
    posted to annotation b2gpaper2 bioinformatics gene_ontology_tool by sgoetz on 2007-10-15 18:09:20 as **
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to b2gpaper2 blast by sgoetz on 2007-09-06 11:16:30 as read along with 45 people and 6 groups pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Web services at the European bioinformatics institute.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by A Labarga, F Valentin, M Anderson, R Lopez
    posted to b2gpaper2 database by sgoetz on 2007-09-06 11:51:27 as read along with 7 people moborg dullhunk sujaikumar niallhaslam sim82 alanrw tny
  • GOPET: a tool for automated predictions of Gene Ontology terms.
    BMC Bioinformatics, Vol. 7 (2006)
    by A Vinayagam, C del Val, F Schubert, R Eils, KH Glatting, S Suhai, R König
    posted to b2gpaper2 gene_ontology_tool by sgoetz on 2007-09-06 11:49:39 as read
  • Entrez Gene: gene-centered information at NCBI.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by D Maglott, J Ostell, KD Pruitt, T Tatusova
    posted to b2gpaper2 database by sgoetz on 2007-09-06 11:46:51 as read along with 3 people fisherp incovoma akastrin
  • AutoFACT: An Automatic Functional Annotation and Classification Tool
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Liisa Koski, Michael Gray, Franz B Lang, Gertraud Burger
    posted to b2gpaper2 gene_ontology_tool by sgoetz on 2007-09-06 11:34:20 as read
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to b2gpaper2 phenomodelcite by sgoetz on 2007-09-07 21:22:44 as read along with 37 people and 7 groups verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
  • The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by E Camon, M Magrane, D Barrell, V Lee, E Dimmer, J Maslen, D Binns, N Harte, R Lopez, R Apweiler
    posted to b2gpaper2 database by sgoetz on 2007-09-06 11:45:40 as read along with 3 people miguel balajis marck
  • New developments in the InterPro database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, V Buillard, L Cerutti, R Copley, E Courcelle, U Das, L Daugherty, M Dibley, R Finn, W Fleischmann, J Gough, D Haft, N Hulo, S Hunter, D Kahn, A Kanapin, A Kejariwal, A Labarga, PS Langendijk-Genevaux, D Lonsdale, R Lopez, I Letunic, M Madera, J Maslen, C McAnulla, J McDowall, J Mistry, A Mitchell, AN Nikolskaya, S Orchard, C Orengo, R Petryszak, JD Selengut, CJ Sigrist, PD Thomas, F Valentin, D Wilson, CH Wu, C Yeats
    posted to annotation b2gpaper2 bioinformatics gene_ontology_tool by sgoetz on 2007-10-11 09:47:37 as read along with 4 people jyuh balajis siebertm pablomendes
  • Comparative analysis of whole-genome sequences of Streptococcus suis
    Chinese Science Bulletin, Vol. 51, No. 10. (16 May 2006), pp. 1199-1209.
    by Wu Wei, Guohui Ding, Xiaojing Wang, Jingchun Sun, Kang Tu, Pei Hao, Chuan Wang, Zhiwei Cao, Tieliu Shi, Yixue Li
    posted to b2gpaper2 citation by sgoetz on 2007-09-10 14:38:27 as read
  • Applying negative rule mining to improve genome annotation
    BMC Bioinformatics, Vol. 8 (21 July 2007), 261.
    by Irena I Artamonova, Goar Frishman, Dmitrij Frishman
    posted to annotation b2gpaper2 by sgoetz on 2007-09-06 11:28:53 as read along with 1 person wenhan
  • Manual curation is not sufficient for annotation of genomic databases
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i41-48.
    by William A Baumgartner, Bretonnel K Cohen, Lynne M Fox, George Acquaah-Mensah, Lawrence Hunter
    posted to annotation b2gpaper2 by sgoetz on 2007-09-10 14:28:09 as read along with 1 person satre
  • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3674-3676.
    by A Conesa, S Götz, JM García-Gómez, J Terol, M Talón, M Robles
    posted to b2gpaper2 blast2go my_papers by sgoetz on 2007-04-20 14:27:30 as ***** along with 4 people Garamonfok talponer imelda aconesa
  • Protein annotation at genomic scale: the current status.
    Chem Rev, Vol. 107, No. 8. (August 2007), pp. 3448-3466.
    by D Frishman
    posted to annotation b2gpaper2 by sgoetz on 2007-09-10 14:12:49 as read
  • Generation, annotation and analysis of ESTs from Trichoderma harzianumCECT 2413
    BMC Genomics, Vol. 7 (27 July 2006), 193.
    by Juan A Vizcaino, Francisco J Gonzalez, Belen M Suarez, Jose Redondo, Julian Heinrich, Jesus Delgado-Jarana, Rosa Hermosa, Santiago Gutierrez, Enrique Monte, Antonio Llobell, Manuel Rey
    posted to b2gpaper2 citation by sgoetz on 2007-09-06 11:41:47 as read
  • Blast2GO goes grid: developing a grid-enabled prototype for functional genomics analysis.
    Stud Health Technol Inform, Vol. 120 (2006), pp. 194-204.
    by G Aparicio, S Götz, A Conesa, D Segrelles, I Blanquer, JM García, V Hernandez, M Robles, M Talon
    posted to b2gpaper2 blast2go my_papers by sgoetz on 2007-04-20 14:26:42 as read along with 1 person jyuh
  • Bioinformatics software for biologists in the genomics era
    Bioinformatics, Vol. 23, No. 14. (1 July 2007), pp. 1713-1717.
    by Sudhir Kumar, Joel Dudley
    posted to b2gpaper2 bioinformatics by sgoetz on 2007-09-06 11:49:09 as read along with 5 people jyuh cjeans ryanraaum asddd Jporci
  • Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus
    Virology, Vol. In Press, Corrected Proof
    by Monica Gandia, Ana Conesa, Gema Ancillo, Jose Gadea, Javier Forment, Vicente Pallas, Ricardo Flores, Nuria Duran-Vila, Pedro Moreno, Jose Guerri
    posted to b2g b2gpaper2 citation by sgoetz on 2007-09-06 11:27:33 as read
  • maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1096-1102.
    by Ana Conesa, Maria J Nueda, Manuel Talon
    posted to b2gpaper2 expression by sgoetz on 2007-09-10 14:30:29 as read along with 2 people ugengma talponer
  • A hitchhiker's guide to expressed sequence tag (EST) analysis.
    Brief Bioinform (23 May 2006)
    by Shivashankar H H Nagaraj, Robin B B Gasser, Shoba Ranganathan
    posted to annotation b2gpaper2 by sgoetz on 2007-09-06 11:38:36 as read along with 2 people and 2 groups nickluscombe Sharpshoot Bioinformatics EBI-regulation
  • OntoBlast function: From sequence similarities directly to potential functional annotations by ontology terms.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3799-3803.
    by G Zehetner
    posted to annotation b2gpaper2 bioinformatics blast2go gene_ontology_tool by sgoetz on 2007-10-11 09:51:26 as read
  • InterProScan--an integration platform for the signature-recognition methods in InterPro.
    Bioinformatics, Vol. 17, No. 9. (September 2001), pp. 847-848.
    by EM Zdobnov, R Apweiler
    posted to annotation b2gpaper2 bioinformatics gene_ontology_tool by sgoetz on 2007-10-11 09:46:06 as read along with 3 people and 1 group indigoviolet dullhunk leechuck EisenLab
  • Automated protein function prediction--the genomic challenge.
    Brief Bioinform (23 May 2006)
    by Iddo Friedberg
    posted to annotation b2gpaper2 gene gene_ontology_tool ontology by sgoetz on 2007-10-17 17:56:24 as read along with 6 people and 3 groups tjimenez yas marcius j3xucite cdallett bootsy T_lab BioinfoCIPF SGU-CIPF
  • Enhanced automated function prediction using distantly related sequences and contextual association by PFP
    Protein Sci, Vol. 15, No. 6. (1 June 2006), pp. 1550-1556.
    by Troy Hawkins, Stanislav Luban, Daisuke Kihara
    posted to b2gpaper2 by sgoetz on 2007-10-05 10:07:45 as read along with 1 person eckart_bindewald
  • ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by SH Nagaraj, N Deshpande, RB Gasser, S Ranganathan
    posted to annotation b2gpaper2 citation by sgoetz on 2007-09-06 11:52:07 as read along with 1 person jyuh
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