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タグ: assembly [283 articles]

Recent papers classified by the tag assembly.
  • Large-Scale Molecular Dynamics Simulations of Self-Assembling Systems
    Science, Vol. 321, No. 5890. (8 August 2008), pp. 798-800.
    by Michael L Klein, Wataru Shinoda
    posted to assembly dynamics by zwang on 2008-08-11 09:18:35 as ** along with 4 people skumagai pbartlett dgront middledomain
  • Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome
    Science (24 January 2008), 1151721.
    by Daniel G Gibson, Gwynedd A Benders, Cynthia Andrews-Pfannkoch, Evgeniya A Denisova, Holly Baden-Tillson, Jayshree Zaveri, Timothy B Stockwell, Anushka Brownley, David W Thomas, Mikkel A Algire, Chuck Merryman, Lei Young, Vladimir N Noskov, John I Glass, Craig J Venter, Clyde A Hutchison, Hamilton O Smith
    posted to assembly genome sequence by zwang on 2008-04-12 13:30:43 as ** along with 8 people operon neveaire grahamc GeeSharpMinor lisa1 renatomilani kevinchannon austin
  • Single-Molecule Cut-and-Paste Surface Assembly
    Science, Vol. 319, No. 5863. (1 February 2008), pp. 594-596.
    by SK Kufer, EM Puchner, H Gumpp, T Liedl, HE Gaub
    posted to assembly surface by zwang on 2008-03-18 08:01:16 as ** along with 3 people stsaft cactus dna
  • Determining the architectures of macromolecular assemblies
    Nature, Vol. 450, No. 7170., pp. 683-694.
    by Frank Alber, Svetlana Dokudovskaya, Liesbeth M Veenhoff, Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T Chait, Michael P Rout, Andrej Sali
    posted to architecture assembly by zwang on 2007-11-30 06:06:48 as *** along with 8 people bicko chad_davis neils cjeans CameronNeylon faion phoenixzxl higueruelo
  • Analysis of Human Immunodeficiency Virus Type 1 Gag Dimerization-Induced Assembly
    J. Virol., Vol. 79, No. 23. (1 December 2005), pp. 14498-14506.
    by Ayna Alfadhli, Tenzin C Dhenub, Amelia Still, Eric Barklis
    posted to assembly gag hiv by zukeboy on 2005-12-12 20:24:40 as **
  • AP-3 Directs the Intracellular Trafficking of HIV-1 Gag and Plays a Key Role in Particle Assembly
    Cell, Vol. 120, No. 5. (11 March 2005), pp. 663-674.
    by Xinhong Dong, Hua Li, Aaron Derdowski, Lingmei Ding, Atuhani Burnett, Xuemin Chen, Timothy R Peters, Terence S Dermody, Elvin Woodruff, Jaang-Jiun Wang, Paul Spearman
    posted to assembly hiv membrane traffic by zukeboy on 2005-09-23 11:58:14 as read
  • Herpesvirus Assembly and Egress
    J. Virol., Vol. 76, No. 4. (15 February 2002), pp. 1537-1547.
    by Thomas C Mettenleiter
    posted to assembly herpes by zukeboy on 2005-11-16 10:10:58 as **
  • Betaherpesvirus-Conserved Cytomegalovirus Tegument Protein ppUL32 (pp150) Controls Cytoplasmic Events during Virion Maturation
    J. Virol., Vol. 80, No. 16. (15 August 2006), pp. 8199-8210.
    by David P Aucoin, Geoffrey B Smith, Christopher D Meiering, Edward S Mocarski
    posted to assembly hcmv tegument by zukeboy on 2006-11-29 10:25:27 as **
  • Matrix-Induced Inhibition of Membrane Binding Contributes to Human Immunodeficiency Virus Type 1 Particle Assembly Defects in Murine Cells
    J. Virol., Vol. 79, No. 24. (15 December 2005), pp. 15586-15589.
    by Theodora Hatziioannou, Juan Martin-Serrano, Trinity Zang, Paul D Bieniasz
    posted to assembly gag hiv by zukeboy on 2005-12-12 20:13:10 as **
  • Characterization of Prototype Foamy Virus Gag Late Assembly Domain Motifs and Their Role in Particle Egress and Infectivity
    J. Virol., Vol. 79, No. 9. (1 May 2005), pp. 5466-5476.
    by Annett Stange, Ingrid Mannigel, Katrin Peters, Martin Heinkelein, Nicole Stanke, Marc Cartellieri, Heinrich Gottlinger, Axel Rethwilm, Hanswalter Zentgraf, Dirk Lindemann
    posted to assembly virus by zukeboy on 2005-12-30 19:21:20 as **
  • YRKL sequence of influenza virus M1 functions as the L domain motif and interacts with VPS28 and Cdc42.
    J Virol, Vol. 80, No. 5. (March 2006), pp. 2291-2308.
    by EK Hui, S Barman, DH Tang, B France, DP Nayak
    posted to assembly escrt influenza by zukeboy on 2006-03-03 11:04:25 as read
  • Identification of Domains in Gag Important for Prototypic Foamy Virus Egress
    J. Virol., Vol. 79, No. 10. (15 May 2005), pp. 6392-6399.
    by Gillian S Patton, Stephen A Morris, Wayne Chung, Paul D Bieniasz, Myra O Mcclure
    posted to assembly foamy gag tsg101 virus by zukeboy on 2006-01-02 17:56:27 as **
  • Mutation of the Dominant Endocytosis Motif in Human Immunodeficiency Virus Type 1 gp41 Can Complement Matrix Mutations without Increasing Env Incorporation
    J. Virol., Vol. 76, No. 7. (1 April 2002), pp. 3338-3349.
    by John T West, Sally K Weldon, Stephanie Wyss, Xiaoxu Lin, Qin Yu, Markus Thali, Eric Hunter
    posted to assembly env hiv by zukeboy on 2005-11-11 09:46:34 as **
  • Organization of cell assemblies in the hippocampus.
    Nature, Vol. 424, No. 6948. (31 July 2003), pp. 552-556.
    by KD Harris, J Csicsvari, H Hirase, G Dragoi, G Buzsáki
    posted to assembly by xlli on 2005-12-20 12:07:25 as ** along with 3 people Kbenchenane batallah apeyrache
  • NEURAL SIGNATURES OF CELL ASSEMBLY ORGANIZATION
    Nat Rev Neurosci, Vol. 6, No. 5. (May 2005), pp. 399-407.
    by Kenneth D Harris
    posted to assembly by xlli on 2005-12-14 18:53:18 as **
  • SOCS1 is an inducible host factor during HIV-1 infection and regulates the intracellular trafficking and stability of HIV-1 Gag
    Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 294-299.
    by Akihide Ryo, Naomi Tsurutani, Kenji Ohba, Ryuichiro Kimura, Jun Komano, Mayuko Nishi, Hiromi Soeda, Shinichiro Hattori, Kilian Perrem, Mikio Yamamoto, Joe Chiba, Jun-Ichi Mimaya, Kazuhisa Yoshimura, Shuzo Matsushita, Mitsuo Honda, Akihiko Yoshimura, Tatsuya Sawasaki, Ichiro Aoki, Yuko Morikawa, Naoki Yamamoto
    posted to assembly hiv replication by wsjames on 2008-01-11 17:48:31 as read along with 1 group Oxford Virology
  • Imaging the biogenesis of individual HIV-1 virions in live cells
    Nature (25 May 2008)
    by Nolwenn Jouvenet, Paul D Bieniasz, Sanford M Simon
    posted to assembly hiv by wsjames on 2008-07-11 18:15:59 as ** along with 4 people and 1 group xingxu lechristophe kieran101 hryk Oxford Virology
  • CD63 Is Not Required for Production of Infectious Human Immunodeficiency Virus Type 1 in Human Macrophages
    J. Virol., Vol. 82, No. 10. (15 May 2008), pp. 4751-4761.
    by Ezequiel Ruiz-Mateos, Annegret Pelchen-Matthews, Magdalena Deneka, Mark Marsh
    posted to assembly hiv by wsjames on 2008-04-28 09:55:48 as ** along with 1 group Oxford Virology
  • Chemical mimicry of viral capsid self-assembly
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20731-20736.
    by Arthur J Olson, Yunfeng H Hu, Ehud Keinan
    posted to assembly structure by wsjames on 2007-12-26 22:01:42 as read along with 1 person and 1 group rodney Oxford Virology
  • Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu
    Nature (16 January 2008)
    by Stuart JD Neil, Trinity Zang, Paul D Bieniasz
    posted to assembly hiv replication by wsjames on 2008-01-26 16:01:37 as read along with 2 people and 1 group kieran101 shung Oxford Virology
  • Biochemical analyses of the interactions between human immunodeficiency virus type 1 Vpr and p6(Gag).
    J Virol, Vol. 75, No. 21. (November 2001), pp. 10537-10542.
    by Y Jenkins, O Pornillos, RL Rich, DG Myszka, WI Sundquist, MH Malim
    posted to assembly hiv by wsjames on 2008-02-11 17:34:32 as read along with 1 group Oxford Virology
  • Foundational Typed Assembly Language with Certified Garbage Collection
    (2007), pp. 326-338.
    by Chunxiao Lin, Andrew Mccreight, Zhong Shao, Yiyun Chen, Yu Guo
    posted to assembly collector coq garbage tal typed by varming on 2008-03-08 16:59:59 as **
  • A general framework for certifying garbage collectors and their mutators
    SIGPLAN Not., Vol. 42, No. 6. (June 2007), pp. 468-479.
    by Andrew Mccreight, Zhong Shao, Chunxiao Lin, Long Li
    posted to assembly collector garbage by varming on 2008-03-08 17:01:40 as **
  • Engineering Methods from Method Requirements Specifications
    Requirements Engineering, Vol. 6, No. 3. (20 October 2001), pp. 135-160.
    by Daya Gupta, Naveen Prakash
    posted to assembly by trickyDick on 2008-06-17 14:53:27 as **
  • Assembly Techniques for Method Engineering
    Advanced Information Systems Engineering (1998), 381.
    by Sjaak Brinkkemper, Motoshi Saeki, Frank Harmsen
    posted to assembly engineering method techniques by trickyDick on 2008-06-15 18:11:28 as read
  • Towards a Generic Model for Situational Method Engineering
    Advanced Information Systems Engineering (2008), pp. 1029-1029.
    by Jolita Ralyté, Rébecca Deneckère, Colette Rolland
    posted to assembly method by trickyDick on 2008-06-17 14:38:01 as read
  • Verification problems in conceptual workflow specifications
    Data & Knowledge Engineering, Vol. 24, No. 3. (January 1998), pp. 239-256.
    by Ter, ME Orlowska, J Rajapakse
    posted to assembly consistency method verification by trickyDick on 2008-06-17 14:07:42 as ***
  • Situational method engineering: combining assembly-based and roadmap-driven approaches
    Requirements Engineering, Vol. 11, No. 1. (11 March 2006), pp. 58-78.
    by Isabelle Mirbel, Jolita Ralyté
    posted to assembly chunks personalization roadmap by trickyDick on 2008-06-17 15:10:47 as read
  • Methodology Engineering R: a proposal for situation-specific methodology construction
    (1992), pp. 257-269.
    by Kuldeep Kumar, Richard J Welke
    posted to assembly engineering method by trickyDick on 2008-06-17 15:08:07 as ****
  • An Approach for Method Reengineering
    Conceptual Modeling — ER 2001 (2001), pp. 471-484.
    by Jolita Ralyté, Colette Rolland
    posted to assembly fragment method reengineering by trickyDick on 2008-06-15 18:38:33 as read
  • notes The MEMA-model: towards a new approach for Method Engineering
    Information and Software Technology, Vol. 38, No. 4. (1996), pp. 295-305.
    by Teade Punter, Karel Lemmen
    posted to assembly method by trickyDick on 2008-06-15 18:58:31 as *** along with 1 person jhiggs
  • An Assembly Process Model for Method Engineering
    Advanced Information Systems Engineering (2001), pp. 267-283.
    by Jolita Ralyté, Colette Rolland
    posted to assembly engineering method techniques by trickyDick on 2008-06-15 18:13:01 as read
  • Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
    BMC Genomics, Vol. 8 (24 May 2007), 132.
    by Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson
    posted to 454 assembly by tpreeprem on 2008-01-16 02:31:38 as ** along with 3 people and 2 groups ghattem GustavoLacerda bozdagd BergmanLab gatech-compgenomics
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
    posted to assembly comparasion by tpreeprem on 2008-01-22 06:54:31 as *** along with 7 people and 2 groups treangen azazello wenhan urgi mariakmejia Neeperando Ema MBLAB gatech-compgenomics
  • The Genome Assembly Archive: A New Public Resource
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e285.
    by Steven L Salzberg, Deanna Church, Michael Dicuccio, Eugene Yaschenko, James Ostell
    posted to assembly software by tpreeprem on 2008-01-25 20:45:51 as ** along with 1 person and 1 group GustavoLacerda gatech-compgenomics
  • ARACHNE: A Whole-Genome Shotgun Assembler
    Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189.
    by Serafim Batzoglou, David B Jaffe, Ken Stanley, Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P Mesirov, Eric S Lander
    posted to arachne assembly software by tpreeprem on 2008-01-15 07:31:55 as ** along with 10 people and 3 groups bpb dayjm balajis indigoviolet balicea pradiptaray ccr azazello wenhan Neeperando EisenLab MBLAB gatech-compgenomics
  • Optical mapping as a routine tool in bacterial genome sequencing
    BMC Genomics, Vol. 8 (14 September 2007), 321.
    by Phil Latreille, Stacie Norton, Barry S Goldman, John Henkhaus, Nancy Miller, Brad Barbazuk, Helge B Bode, Creg Darby, Zijin Du, Steve Forst, Sophie Gaudriault, Brad Goodner, Heidi Goodrich-Blair, Steven Slater
    posted to assembly optical by tpreeprem on 2008-01-16 02:14:07 as ** along with 1 group gatech-compgenomics
  • A whole-genome assembly of Drosophila.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204.
    by EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, SA Kravitz, CM Mobarry, KH Reinert, KA Remington, EL Anson, RA Bolanos, HH Chou, CM Jordan, AL Halpern, S Lonardi, EM Beasley, RC Brandon, L Chen, PJ Dunn, Z Lai, Y Liang, DR Nusskern, M Zhan, Q Zhang, X Zheng, GM Rubin, MD Adams, JC Venter
    posted to assembly by tpreeprem on 2008-01-17 01:45:30 as ** along with 5 people and 3 groups bluto azazello wenhan yoanjacquemin cisevol MBLAB gatech-compgenomics Drosophila-Genetics-Genomics-2008
  • Opinion: Neural signatures of cell assembly organization
    Nature Reviews Neuroscience, Vol. 6, No. 5. (01 May 2005), pp. 399-407.
    by Kenneth D Harris
    posted to assembly cell neuroscience by tmiya on 2006-12-01 09:04:23 as ** along with 2 people batallah pgastrein
  • Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs
    Genome Res. (18 March 2008), gr.074492.107.
    by Daniel Zerbino, Ewan Birney
    posted to assembly nextgenseq shortread solexa by tharris on 2008-05-30 21:29:44 as read along with 7 people and 1 group stajich farhat iris42 Neeperando sharpton GustavoLacerda gdb Berkeley Mycology
  • A machine-learning approach to combined evidence validation of genome assemblies
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750.
    by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G Gilbert, John K Colbourne
    posted to assembly assessment bioinformatics genome genomeanalysis by tharris on 2008-06-20 16:58:27 as ** along with 4 people GustavoLacerda Neeperando ttuechler bertelsen
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to assembly bioinformatics nextgenseq review shortread solexa solid by tharris on 2008-05-30 21:35:48 as ** along with 13 people giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr mariakmejia caseybrown yoonk druvus
  • ALLPATHS: De novo assembly of whole-genome shotgun microreads.
    Genome Res (13 March 2008)
    by Jonathan Butler, Iain Maccallum, Michael Kleber, Ilya A A Shlyakhter, Matthew K K Belmonte, Eric S S Lander, Chad Nusbaum, David B B Jaffe
    posted to algorithm assembly methods shortread solexa wholegenome by tharris on 2008-06-02 21:02:56 as ** along with 9 people and 1 group stajich azazello hpaces jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Berkeley Mycology
  • Figaro: a novel statistical method for vector sequence removal
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 462-467.
    by James R White, Michael Roberts, James A Yorke, Mihai Pop
    posted to assembly bioinformatics genomeassembly methods repeats by tharris on 2008-06-20 17:00:11 as ** along with 2 people jyuh GustavoLacerda
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to algorithm assembly genomeassembly shortread by tharris on 2008-06-20 16:59:31 as ** along with 5 people azazello GustavoLacerda dandaman caseybrown iris42
  • Demonstration of assembly work using augmented reality
    (2007), pp. 120-123.
    by Tapio Salonen, Juha Sääski, Mika Hakkarainen, Theofanis Kannetis, Manolis Perakakis, Sanni Siltanen, Alexandros Potamianos, Otto Korkalo, Charles Woodward
    posted to assembly augmented_reality manufacturing system by tcon on 2007-10-05 23:43:05 as **
  • Neuronal circuits of the neocortex.
    Annu Rev Neurosci, Vol. 27 (2004), pp. 419-451.
    by RJ Douglas, KA Martin
    posted to assembly circuit cortical interactions neurons by sylvain_chevallier on 2008-07-22 16:17:01 as read along with 3 people klouie fbaroni dcoates
  • DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution.
    Proc Natl Acad Sci U S A, Vol. 91, No. 22. (25 October 1994), pp. 10747-10751.
    by WP Stemmer
    posted to assembly dna evolution fragmentation molecular mutagenesis proteins shuffling by sverzijl on 2007-07-31 21:38:00 as *** along with 3 people Ali3n dmlai minostro
  • Factors affecting user performance in haptic assembly
    Virtual Reality, Vol. 11, No. 4. (October 2007), pp. 241-252.
    by Lim, , Ritchie, , Dewar, , Corney, , Wilkinson, , Calis, , Desmulliez, , Fang, -J
    posted to assembly haptic sa2 by stumbled on 2008-04-15 11:52:28 as ****
  • Desktop haptic virtual assembly using physically based modelling
    Virtual Reality, Vol. 11, No. 4. (October 2007), pp. 207-215.
    by Howard, Brad, Vance, Judy
    posted to assembly haptic physics sa2 by stumbled on 2008-04-15 11:50:57 as read
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