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タグ: archaea [101 articles]

Recent papers classified by the tag archaea.
  • Experimental Characterization of Cis-Acting Elements Important for Translation and Transcription in Halophilic Archaea
    PLoS Genetics, Vol. 3, No. 12. (1 December 2007), e229.
    by Mariam Brenneis, Oliver Hering, Christian Lange, Jörg Soppa
    posted to archaea element experiment transcription translation by zwang on 2008-01-02 10:45:35 as **
  • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel.
    Appl Environ Microbiol, Vol. 63, No. 1. (January 1997), pp. 50-56.
    by R Massana, AE Murray, CM Preston, EF DeLong
    posted to santa_barbara_chanel eurys crens archaea by vrich on 2008-05-19 22:02:30 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California.
    ISME J (24 January 2008)
    by Shana K K Goffredi, Regina Wilpiszeski, Ray Lee, Victoria J J Orphan
    posted to trflp methanogens archaea by vrich on 2008-05-05 02:10:40 as ** along with 2 people and 1 group mjetten Katje microbiology_nijmegen
  • Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers
    Environmental Microbiology, Vol. 6, No. 1. (2004), pp. 19-34.
    by Purificacion Lopez-Garcia, Celine Brochier, David Moreira, Francisco Rodriguez-Valera
    posted to hgt deep_ant crens archaea antarctic by vrich on 2008-05-19 22:27:18 as ** along with 1 person jmeppley
  • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    Nature, Vol. 409, No. 6819. (25 January 2001), pp. 507-510.
    by Markus B Karner, Edward F Delong, David M Karl
    posted to gi fish crens archaea by vrich on 2008-05-03 22:11:00 as **
  • Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
    Proceedings of the National Academy of Sciences, Vol. 103, No. 10. (7 March 2006), pp. 3846-3851.
    by Jennifer F Biddle, Julius S Lipp, Mark A Lever, Karen G Lloyd, Ketil B Sorensen, Rika Anderson, Helen F Fredricks, Marcus Elvert, Timothy J Kelly, Daniel P Schrag, Mitchell L Sogin, Jean E Brenchley, Andreas Teske, Christopher H House, Kai-Uwe Hinrichs
    posted to lipids fish archaea 16srrna by vrich on 2008-05-09 22:44:01 as **
  • Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.
    Proc Natl Acad Sci U S A, Vol. 103, No. 17. (25 April 2006), pp. 6442-6447.
    by AE Ingalls, SR Shah, RL Hansman, LI Aluwihare, GM Santos, ER Druffel, A Pearson
    posted to pacific lipids archaea by vrich on 2008-05-10 01:30:12 as ** along with 1 person and 2 groups kinestetika anammox microbiology_nijmegen
  • Uncultured archaea in deep marine subsurface sediments: have we caught them all?
    ISME J, Vol. 2, No. 1. (November 2007), pp. 3-18.
    by Andreas Teske, Ketil B Sorensen
    posted to pcr_bias archaea by vrich on 2008-05-09 21:42:02 as ** along with 2 people skato_toyaku Olaf_Ilzins
  • Refuting phylogenetic relationships
    Biology Direct, Vol. 1 (06 September 2006), 26.
    by James Bucknam, Yan Boucher, Eric Bapteste
    posted to archaea bacteria pca phylogeny by tny on 2006-09-06 17:31:08 as ** along with 1 person aprasad
  • Lineages of acidophilic archaea revealed by community genomic analysis.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1933-1935.
    by BJ Baker, GW Tyson, RI Webb, J Flanagan, P Hugenholtz, EE Allen, JF Banfield
    posted to archaea life-forms tiny by tkandell on 2006-12-25 14:38:49 as ***** along with 1 person theseuskf
  • Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea
    Genome Res., Vol. 14, No. 11. (1 November 2004), pp. 2221-2234.
    by Nitin S Baliga, Richard Bonneau, Marc T Facciotti, Min Pan, Gustavo Glusman, Eric W Deutsch, Paul Shannon, Yulun Chiu, Rueyhung S Weng, Rueichi R Gan, Pingliang Hung, Shailesh V Date, Edward Marcotte, Leroy Hood, Wailap V Ng
    posted to archaea bioinformatics genomics haloarcula interactome networks sequencing by svdate on 2007-12-04 15:44:07 as ***** along with 1 person wxg119
  • Protein secretion in the Archaea: multiple paths towards a unique cell surface
    Nature Reviews Microbiology, Vol. 4, No. 7. (06 June 2006), pp. 537-547.
    by Sonja-Verena Albers, Zalã¡n Szabã³, Arnold JM Driessen
    posted to archaea bindosome flagella own peptidases secretion signalpeptides by sulfolob on 2008-02-20 21:57:20 as ** along with 1 person franklin
  • Identification of diverse archaeal proteins with class III signal peptides cleaved by distinct archaeal prepilin peptidases.
    J Bacteriol (17 November 2006)
    by Zalán Szabó, Adriana Oliveira O Stahl, Sonja-V V Albers, Jessica C C Kissinger, Arnold J M J Driessen, Mechthild Pohlschröder
    posted to archaea classiii own signalpeptides by sulfolob on 2008-02-20 21:38:21 as ** along with 1 person franklin
  • Bioenergetics and solute uptake under extreme conditions.
    Extremophiles, Vol. 5, No. 5. (October 2001), pp. 285-294.
    by SV Albers, JL Van de Vossenberg, AJ Driessen, WN Konings
    posted to archaea bioenergetics transporter by sulfolob on 2008-03-16 22:00:36 as **
  • notes Archaeal genetics - the third way
    Nature Reviews Genetics, Vol. 6, No. 1. (01 January 2005), pp. 58-73.
    by Thorsten Allers, Moshe Mevarech
    posted to genetics archaea by sulfolob on 2008-07-14 12:39:29 as **
  • Hyperthermophilic archaebacteria within the crater and open-sea plume of erupting Macdonald Seamount
    Nature, Vol. 345, No. 6271. (10 May 1990), pp. 179-182.
    by R Huber, P Stotters, JL Cheminee, HH Richnow, KO Stetter
    posted to archaea hyperthermophile nature by skato_toyaku on 2008-03-06 10:14:31 as **
  • Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis
    Nature, Vol. 376, No. 6535. (6 July 1995), pp. 57-58.
    by R Huber, S Burggraf, T Mayer, SM Barns, P Rossnagel, KO Stetter
    posted to archaea hyperthermophile isolation nature by skato_toyaku on 2008-03-06 10:13:27 as **
  • Biosignatures present in a hydrothermal massive sulfide from the Mid-Atlantic Ridge
    Geobiology, Vol. 5, No. 4. (December 2007), pp. 435-450.
    by M Blumenberg, R Seifert, S Petersen, W Michaelis
    posted to archaea hydrothermal lipid by skato_toyaku on 2008-03-06 11:23:39 as **
  • Microbial Communities of Deep Marine Subsurface Sediments: Molecular and Cultivation Surveys
    Geomicrobiology Journal, Vol. 23, No. 6. (September 2006), pp. 357-368.
    by Teske, Andreas
    posted to uncultured archaea by skato_toyaku on 2008-07-17 13:40:19 as ** along with 1 person cckan
  • Microbial diversity and the genetic nature of microbial species
    Nature Reviews Microbiology, Vol. 6, No. 6., pp. 431-440.
    by Mark Achtman, Michael Wagner
    posted to nature microbial diversity archaea by skato_toyaku on 2008-06-11 16:51:03 as ** along with 1 person and 2 groups vaulot Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Structure of the Archaeal Community of the Rumen
    Appl. Environ. Microbiol., Vol. 74, No. 12. (15 June 2008), pp. 3619-3625.
    by Peter H Janssen, Marek Kirs
    posted to archaea aem by skato_toyaku on 2008-06-13 09:33:37 as **
  • Structural and functional investigation of a putative archaeal selenocysteine synthase.
    Biochemistry, Vol. 44, No. 40. (11 October 2005), pp. 13315-13327.
    by JT Kaiser, K Gromadski, M Rother, H Engelhardt, MV Rodnina, MC Wahl
    posted to amino-acids archaea pathways rareaa structure selenocysteine by rsandie on 2007-12-11 20:10:30 as **
  • Extremely halophilic archaea and the issue of long-term microbial survival
    Reviews in Environmental Science and Biotechnology, Vol. 5, No. 2. (2006), pp. 203-218.
    by Sergiu Fendrihan, Andrea Legat, Marion Pfaffenhuemer, Claudia Gruber, Gerhard Weidler, Friedrich Gerbl, Helga Stan-Lotter
    posted to archaea extremely halophilic long-term microbial survival by rowenabrennavart on 2008-04-17 01:25:27 as **
  • Characterization of extremely halophilic Archaea isolated from the Ayvalik Saltern, Turkey
    World Journal of Microbiology and Biotechnology, Vol. 20, No. 7. (1 October 2004), pp. 719-725.
    by Rahel Elevi, Parvaneh Assa, Meral Birbir, Ayse Ogan, Aharon Oren
    posted to archaea extremely isolated turkey by rowenabrennavart on 2008-04-17 01:24:24 as **
  • Characterization of extremely halophilic Archaea isolated from saline environment in different parts of Turkey
    Microbiology, Vol. 75, No. 6. (December 2006), pp. 739-746.
    by Ozcan, , Cokmus, , Coleri, , Caliskan,
    posted to archaea characterization environment extremely halophilic isolated saline by rowenabrennavart on 2008-04-17 00:58:39 as **
  • A 3-Hydroxypropionate/4-Hydroxybutyrate Autotrophic Carbon Dioxide Assimilation Pathway in Archaea
    Science, Vol. 318, No. 5857. (14 December 2007), pp. 1782-1786.
    by Ivan A Berg, Daniel Kockelkorn, Wolfgang Buckel, Georg Fuchs
    posted to archaea evolution by renatomilani on 2007-12-14 12:55:31 as read along with 2 people and 1 group jwm kinestetika microbiology_nijmegen
  • Evolution of mal ABC transporter operons in the Thermococcales and Thermotogales
    BMC Evolutionary Biology, Vol. 8, No. 1. (2008)
    by Kenneth Noll, Pascal Lapierre, J Gogarten, Dhaval Nanavati
    posted to archaea bacteria evolution by renatomilani on 2008-01-16 13:57:46 as **
  • Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and Korarchaeotaa
    Biology Direct, Vol. 2 (14 December 2007), 38.
    by Eugene V Koonin, Kira S Makarova, James G Elkins
    posted to archaea protein sequence by renatomilani on 2007-12-17 11:21:56 as **
  • Archaea with square cells.
    Trends Microbiol, Vol. 13, No. 5. (May 2005), pp. 193-195.
    by AE Walsby
    posted to archaea cell shape by praveersharma on 2006-04-11 18:57:45 as ** along with 1 person madhadron
  • Identification and Characterization of Sulfolobus solfataricus P2 Proteome Using Multidimensional Liquid Phase Protein Separations
    J. Proteome Res. (9 May 2008)
    by Bobby F Assiddiq, Ambrosius P Snijders, Poh K Chong, Phillip C Wright, Mark Dickman
    posted to mass-spec sulfolobus proteomics chromatography archaea by neils on 2008-05-09 07:49:31 as **
  • Crystal structure of PAE0151 from <I>Pyrobaculum aerophilum</I>, a PIN-domain (VapC) protein from a toxin-antitoxin operon
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Richard D Bunker, Joanna L Mckenzie, Edward N Baker, Vickery L Arcus
    posted to antitoxin archaea crystallography protein pyrobaculum structure toxin by neils on 2008-04-09 04:13:35 as **
  • Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes.
    FEBS J, Vol. 272, No. 11. (June 2005), pp. 2800-2810.
    by N LaRonde-LeBlanc, T Guszczynski, T Copeland, A Wlodawer
    posted to archaea kinase phosphorylation rio structure by neils on 2008-01-04 07:02:04 as **
  • Structure and activity of the atypical serine kinase Rio1.
    FEBS J, Vol. 272, No. 14. (July 2005), pp. 3698-3713.
    by N Laronde-Leblanc, T Guszczynski, T Copeland, A Wlodawer
    posted to archaea kinase rio structure by neils on 2008-01-04 07:01:01 as **
  • Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases.
    Structure, Vol. 12, No. 9. (September 2004), pp. 1585-1594.
    by N LaRonde-LeBlanc, A Wlodawer
    posted to archaea kinase rio structure by neils on 2008-01-04 07:00:25 as **
  • The split genes of Nanoarchaeum equitans are an ancestral character.
    Gene (11 June 2008)
    by Massimo Di Giulio
    posted to nanoarcheum introns hyperthermophily evolution archaea by neils on 2008-07-02 14:31:36 as **
  • Life without RNase P
    Nature, Vol. 453, No. 7191., pp. 120-123.
    by Lennart Randau, Imke Schröder, Dieter Söll
    posted to trna synthesis rnasep ribonuclease nanoarcheum evolution archaea by neils on 2008-05-01 02:19:42 as ** along with 4 people and 2 groups austin kinestetika zwang stajich microbiology_nijmegen Berkeley Mycology
  • Sweet to the extreme: protein glycosylation in Archaea
    Molecular Microbiology, Vol. 68, No. 5. (June 2008), pp. 1079-1084.
    by Yurist-Doutsch, Sophie, Chaban, Bonnie, Vandyke, J David, Jarrell, F Ken, Eichler, Jerry
    posted to review glycosylation archaea by neils on 2008-05-16 00:13:40 as **
  • The Structure of an Archaeal Pilus.
    Journal of molecular biology (12 June 2008)
    by Ying A A Wang, Xiong Yu, Sandy Y M Y Ng, Ken F F Jarrell, Edward H H Egelman
    posted to electron-microscopy cryo-em structure pilus methanococcus archaea by neils on 2008-07-09 12:51:38 as **
  • Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic O-phosphoseryl-tRNASec kinase
    Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1871-1880.
    by Lynn R Sherrer, Joanne M Ho, Dieter Soll
    posted to archaea eukaryotic kinase selenocysteine trna by neils on 2008-04-04 00:19:36 as **
  • Insight into the proteome of the hyperthermophilic Crenarchaeon Ignicoccus hospitalis: the major cytosolic and membrane proteins.
    Archives of microbiology (27 June 2008)
    by Tillmann Burghardt, Manfred Saller, Sonja Gürster, Daniel Müller, Carolin Meyer, Ulrike Jahn, Eduard Hochmuth, Rainer Deutzmann, Frank Siedler, Patrick Babinger, Reinhard Wirth, Harald Huber, Reinhard Rachel
    posted to proteomics membrane ignicoccus cytosol archaea by neils on 2008-06-29 04:48:48 as **
  • Indicators from archaeal secretomes.
    Microbiological research (11 April 2008)
    by Mazen Saleh, Catharine Song, Sabah Nasserulla, L G G Leduc
    posted to analysis archaea bioinformatics genomics prediction secretion by neils on 2008-04-18 12:25:45 as **
  • Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation
    Genome Biology, Vol. 9, No. 4. (2008)
    by Jonathan Berthon, Diego Cortez, Patrick Forterre
    posted to archaea comparative genomics replication translation by neils on 2008-04-09 12:02:55 as **
  • An online database for the detection of novel archaeal sequences in human ESTs.
    Bioinformatics (Oxford, England), Vol. 20, No. 15. (12 October 2004), pp. 2361-2362.
    by NF Saunders, PM Curmi, R Cavicchioli
    posted to pathogen genomics est database bioinformatics archaea by neils on 2008-05-11 10:26:19 as **
  • Pathogenic archaea: do they exist?
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 25, No. 11. (November 2003), pp. 1119-1128.
    by R Cavicchioli, PM Curmi, N Saunders, T Thomas
    posted to review pathogen archaea by neils on 2008-05-11 10:25:26 as **
  • A korarchaeal genome reveals insights into the evolution of the Archaea.
    Proceedings of the National Academy of Sciences of the United States of America (5 June 2008)
    by James G G Elkins, Mircea Podar, David E E Graham, Kira S S Makarova, Yuri Wolf, Lennart Randau, Brian P P Hedlund, Céline Brochier-Armanet, Victor Kunin, Iain Anderson, Alla Lapidus, Eugene Goltsman, Kerrie Barry, Eugene V V Koonin, Phil Hugenholtz, Nikos Kyrpides, Gerhard Wanner, Paul Richardson, Martin Keller, Karl O O Stetter
    posted to koryarchaeum koryarchaeota genome evolution archaea by neils on 2008-06-08 08:54:30 as ** along with 2 people cmzmasek skato_toyaku
  • A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii.
    Molecular microbiology, Vol. 53, No. 1. (July 2004), pp. 309-321.
    by A Goodchild, NF Saunders, H Ertan, M Raftery, M Guilhaus, PM Curmi, R Cavicchioli
    posted to psychrophily proteomics methanococcoides archaea antarctic by neils on 2008-05-11 10:12:36 as **
  • Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry.
    Journal of proteome research, Vol. 3, No. 6. (c 2004), pp. 1164-1176.
    by A Goodchild, M Raftery, NF Saunders, M Guilhaus, R Cavicchioli
    posted to mass-spec psychrophily proteomics methanococcoides chromatography archaea antarctic by neils on 2008-05-11 10:11:12 as **
  • Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii.
    Journal of proteome research, Vol. 4, No. 2. (r 2005), pp. 464-472.
    by NF Saunders, A Goodchild, M Raftery, M Guilhaus, PM Curmi, R Cavicchioli
    posted to protein psychrophily prediction methanococcoides function bioinformatics archaea antarctic by neils on 2008-05-11 10:09:25 as **
  • Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT.
    Journal of proteome research, Vol. 4, No. 2. (r 2005), pp. 473-480.
    by A Goodchild, M Raftery, NF Saunders, M Guilhaus, R Cavicchioli
    posted to psychrophily proteomics methanococcoides icat archaea antarctic by neils on 2008-05-11 10:08:25 as **
  • A New Type of Sulfite Reductase, a Novel Coenzyme F420-dependent Enzyme, from the Methanarchaeon Methanocaldococcus jannaschii
    J. Biol. Chem., Vol. 280, No. 46. (18 November 2005), pp. 38776-38786.
    by Eric F Johnson, Biswarup Mukhopadhyay
    posted to archaea s by michC on 2007-05-31 23:37:29 as ***
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