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タグ: amino-acid [27 articles]

Recent papers classified by the tag amino-acid.
  • notes Where did the BLOSUM62 alignment score matrix come from?
    Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1035-1036.
    by SR Eddy
    posted to amino-acid primer sequence-alignment substitution-matrix by xiaobeizhao on 2006-10-08 22:31:06 as ***** along with 5 people ziquje bicko gurkanbebek rabio reyez
  • Comparative analyses of codon and amino acid usage in symbiotic island and core genome in nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum.
    Journal of biomolecular structure & dynamics, Vol. 23, No. 2. (October 2005), pp. 221-232.
    by S Das, A Pan, S Paul, C Dutta
    posted to amino-acid bradyrhizobium-japonicum codon-usage usage by Saby2000 on 2008-04-19 02:42:07 as **
  • Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom
    BMC Evolutionary Biology, Vol. 7 (09 August 2007), 134.
    by Eiko E Kuramae, Vincent Robert, Carlos Echavarri-Erasun, Teun Boekhout
    posted to algorithms amino-acid data-mining fungi methods phylogenomics phylogeny phyloinformatics proteins by rvosa on 2008-02-01 11:30:06 as ** along with 1 person and 2 groups stajich FAB-lab Berkeley Mycology
  • New Approaches to Phylogenetic Tree Search and Their Application to Large Numbers of Protein Alignments
    Systematic Biology, Vol. 56, No. 5. (2007), pp. 727-740.
    by Simon Whelan
    posted to algorithms amino-acid methods phylogeny proteins software by rvosa on 2008-02-01 11:11:01 as ** along with 1 person and 1 group stajich FAB-lab
  • Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
    Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383.
    by Giddy Landan, Dan Graur
    posted to algorithms alignment amino-acid data-mining dna methods phylogeny phyloinformatics sequence by rvosa on 2008-02-01 11:01:06 as ** along with 7 people and 1 group aprasad BioNica stajich cjeans zwang lilou mailund FAB-lab
  • Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.
    Gene, Vol. 383 (15 November 2006), pp. 24-32.
    by RA Cramer, JE Stajich, Y Yamanaka, FS Dietrich, WJ Steinbach, JR Perfect
    posted to amino-acid data-mining dna methods phylogenomics proteins by rvosa on 2008-02-01 11:22:31 as ** along with 1 person and 1 group stajich FAB-lab
  • Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
    Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751.
    by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su
    posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa on 2008-08-12 08:00:47 as ** along with 1 group FAB-lab
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to algorithms amino-acid animals data-mining genetics genome hominidae homology humans mammals methods phylogenomics primates proteins rna sequence vertebrates by rvosa on 2008-02-01 11:04:06 as ** along with 15 people and 3 groups tmmurali balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Berkeley Mycology
  • Molecular Evolution in the Descent of Man
    Nature, Vol. 233, No. 5322. (29 October 1971), pp. 604-613.
    by Morris Goodman, JOHN Barnabas, Genji Matsuda, William G Moore
    posted to amino-acid clock-like divergence diversification evolution mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:20:56 as **
  • Statistical analysis of the physical properties of the 20 naturally occurring amino acids
    Journal of Protein Chemistry, Vol. 4, No. 1. (1 February 1985), pp. 23-55.
    by Akinori Kidera, Yasuo Konishi, Masahito Oka, Tatsuo Ooi, Harold A Scheraga
    posted to statistics amino-acid sequence protein by neils on 2007-12-11 06:54:52 as **
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Byung-Chul Lee, Keunwan Park, Dongsup Kim
    posted to bioinformatics coevolution function network amino-acid residue by neils on 2008-04-10 13:28:46 as ** along with 7 people and 2 groups barry sobolevnrm mingzhi penpen926 scienbox wilbur friendpine structural_bioinformatics baker-group
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as ** along with 2 people mloewer Evangelia
  • Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions
    BMC Genomics, Vol. 7 (05 December 2006), 307.
    by Fredj Tekaia, Edouard Yeramian
    posted to amino-acid evolution by brant to the group EisenLab on 2006-12-13 14:42:54 as **
  • Are knowledge-based potentials derived from protein structure sets discriminative with respect to amino acid types?
    Proteins: Structure, Function, and Genetics, Vol. 31, No. 3. (1998), pp. 225-246.
    by Shamil R Sunyaev, Frank Eisenhaber, Patrick Argos, Eugene N Kuznetsov, Vladimir G Tumanyan
    posted to amino-acid potential protein statistics structure by Evangelia on 2007-10-02 10:10:09 as read
  • The Problem of Amino Acid Complementarity and Antisense Peptides
    Current Protein and Peptide Science, Vol. 5, No. 6., 507.
    by Ignacy Z Siemion, Marek Cebrat, Alicja Kluczyk
    posted to amino-acid peptides properties by Evangelia on 2007-10-01 15:34:57 as ****
  • Immunoreactivity and amino acid content of fermented soybean products.
    Journal of agricultural and food chemistry, Vol. 56, No. 1. (9 January 2008), pp. 99-105.
    by J Frias, YS Song, C Martínez-Villaluenga, E González de Mejia, C Vidal-Valverde
    posted to amino-acid fermented immunoreactivity soybean by annathomson on 2008-05-12 16:20:39 as **
  • Amino acid uptake: a widespread ability among boreal forest plants
    Ecology Letters, Vol. 4, No. 5. (2001), pp. 434-438.
    by Jorgen Persson, Torgny Nasholm
    posted to 2007-69 amino-acid methods review by agallet on 2007-05-16 19:41:38 as read
  • Organic and inorganic nitrogen nutrition of western red cedar, western hemlock and salal in mineral N-limited cedar-hemlock forests.
    Oecologia, Vol. 141, No. 3. (November 2004), pp. 468-476.
    by JN Bennett, CE Prescott
    posted to 2006-66 amino-acid isotope mycorrhizae protein tannins by agallet on 2006-09-15 19:17:06 as **
  • Nitrogen acquisition from inorganic and organic sources by boreal forest plants in the field
    Oecologia, Vol. 137, No. 2. (21 October 2003), pp. 252-257.
    by Jörgen Persson, Peter Högberg, Alf Ekblad, Monan Högberg, Anders Nordgren, Torgny Näsholm
    posted to 13c 15n 2007-56 amino-acid boreal_forest organic_nitrogen by agallet on 2007-05-16 19:03:41 as read along with 1 person upupa1957
  • Rapid uptake of 15N-ammonium and glycine-13C, 15N by arbuscular and ericoid mycorrhizal plants native to a Northern California coastal pygmy forest
    Soil Biology and Biochemistry, Vol. 39, No. 5. (May 2007), pp. 1078-1086.
    by Kai C Rains, Caroline S Bledsoe
    posted to 13c 15n 2007-53 amino-acid mycorrhizae uptake by agallet on 2007-05-16 18:58:38 as read
  • Soil Amino Acid Utilization among Species of the Cyperaceae: Plant and Soil Processes
    Ecology, Vol. 80, No. 7. (1999), pp. 2408-2419.
    by Theodore K Raab, David A Lipson, Russell K Monson
    posted to 2005-52 amino-acid plant sorption by agallet on 2005-05-06 18:31:48 as read
  • Control of amino acid mineralization and microbial metabolism by temperature
    Soil Biology and Biochemistry, Vol. 33, No. 7-8. (June 2001), pp. 1137-1140.
    by L Vinolas, V Vallejo, D Jones
    posted to amino-acid mineralization temperature by agallet on 2005-05-06 18:26:42 as read
  • Kinetics of amino acid uptake by ectomycorrhizal roots
    Plant, Cell & Environment, Vol. 22, No. 2. (February 1999), pp. 179-187.
    by T Wallenda, DJ Read
    posted to 2005-44 amino-acid ectomycorrhiza uptake by agallet on 2005-05-06 17:19:20 as *** along with 1 person Zulfatrimusha
  • Rapid intrinsic rates of amino acid biodegradation in soils are unaffected by agricultural management strategy
    Soil Biology and Biochemistry, Vol. 37, No. 7. (July 2005), pp. 1267-1275.
    by D Jones, S Kemmitt, D Wright, S Cuttle, R Bol, A Edwards
    posted to 2005-50 agricultutal_soils amino-acid by agallet on 2005-05-06 18:25:17 as read
  • Interference by amino acids during the determination of 15N ammonium in soil
    Soil Biology and Biochemistry, Vol. In Press, Corrected Proof
    by Anke Herrmann, Victoria B Willett, Elizabeth A Stockdale, David L Jones
    posted to amino-acid methods by agallet on 2005-05-06 18:23:49 as read
  • Amino-acid influx at the soil-root interface of Zea mays L. and its implications in the rhizosphere
    Plant and Soil (Historical Archive), Vol. 163, No. 1. (June 1994), pp. 1-12.
    by D Jones, P Darrah
    posted to 2005-54 amino-acid exudates rhizosphere by agallet on 2005-05-27 14:04:35 as ***
  • Resource-based niches provide a basis for plant species diversity and dominance in arctic tundra.
    Nature, Vol. 415, No. 6867. (3 January 2002), pp. 68-71.
    by RB McKane, LC Johnson, GR Shaver, KJ Nadelhoffer, EB Rastetter, B Fry, AE Giblin, K Kielland, BL Kwiatkowski, JA Laundre, G Murray
    posted to 15n 2007-59 amino-acid mixing_model niches tundra by agallet on 2007-05-16 19:08:25 as read
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