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タグ: allosteric [59 articles]

Recent papers classified by the tag allosteric.
  • Allostery and cooperativity revisited
    Protein Sci, Vol. 17, No. 8. (1 August 2008), pp. 1295-1307.
    by Qiang Cui, Martin Karplus
    posted to allosteric dynamics review by tny on 2008-08-20 04:29:42 as ** along with 2 people ruvido agrossfield
  • Allosteric Regulation of Hsp70 Chaperones by a Proline Switch
    Molecular Cell, Vol. 21, No. 3. (3 February 2006), pp. 359-367.
    by Markus Vogel, Bernd Bukau, Matthias P Mayer
    posted to allosteric hsp70 by pdelosri on 2006-11-05 22:08:07 as *** along with 1 person and 3 groups barry structural_bioinformatics Bioinformatics EPFL_SB_ITP_LBS
  • Allosteric effects of DNA on transcriptional regulators.
    Nature, Vol. 392, No. 6679. (30 April 1998), pp. 885-888.
    by JA Lefstin, KR Yamamoto
    posted to protein dna allosteric by mijogiffin on 2008-09-16 17:09:37 as **
  • Structural determinants of allosteric ligand activation in RXR heterodimers.
    Cell, Vol. 116, No. 3. (6 February 2004), pp. 417-429.
    by AI Shulman, C Larson, DJ Mangelsdorf, R Ranganathan
    posted to allosteric bioinformatics biophysics statistical_potentials by marcius on 2006-08-09 16:38:37 as ** along with 3 people and 3 groups lna gbart caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
  • Allosteric determinants in guanine nucleotide-binding proteins.
    Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450.
    by ME Hatley, SW Lockless, SK Gibson, AG Gilman, R Ranganathan
    posted to allosteric bioinformatics biophysics statistical_potentials by marcius on 2006-08-09 16:38:51 as ** along with 4 people and 5 groups barry lna Einat caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
    Current Opinion in Structural Biology, Vol. 17, No. 6. (December 2007), pp. 633-640.
    by Ivet Bahar, Chakra Chennubhotla, Dror Tobi
    posted to allosteric flexibility md by LamBras on 2008-04-25 14:35:05 as *** along with 8 people and 4 groups barry aqeel ruvido cactus sobolevnrm jennifermbui higueruelo jmccammon structural_bioinformatics Bioinformatics baker-group McCammon
  • Modeling the functional effects of allosteric modulators at pharmacological receptors: an extension of the two-state model of receptor activation.
    Mol Pharmacol, Vol. 58, No. 6. (December 2000), pp. 1412-1423.
    by DA Hall
    posted to activation allosteric kinetics by jporternj on 2008-03-28 19:34:30 as * along with 1 person lenov
  • The Allosteric Mechanism of Yeast Chorismate Mutase: A Dynamic Analysis
    Journal of Molecular Biology, Vol. 356, No. 1. (10 February 2006), pp. 237-247.
    by Yifei Kong, Jianpeng Ma, Martin Karplus, William N Lipscomb
    posted to 2006 allosteric dynamics flexibility nma by higueruelo on 2008-03-19 10:16:45 as ** along with 2 people and 2 groups barry ruvido structural_bioinformatics Bioinformatics
  • Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
    PNAS, Vol. 103, No. 20. (16 May 2006), pp. 7664-7669.
    by Wenjun Zheng, Bernard R Brooks, D Thirumalai
    posted to 2006 allosteric nma by higueruelo on 2008-02-21 14:08:45 as ** along with 1 person aqeel
  • Allosteric mechanisms of signal transduction.
    Science, Vol. 308, No. 5727. (3 June 2005), pp. 1424-1428.
    by JP Changeux, SJ Edelstein
    posted to 2005 allosteric review by higueruelo on 2008-02-21 17:21:13 as ** along with 5 people apaydin lna aqeel lenov paurue
  • Allosteric inhibitors of inducible nitric oxide synthase dimerization discovered via combinatorial chemistry.
    Proc Natl Acad Sci U S A, Vol. 97, No. 4. (15 February 2000), pp. 1506-1511.
    by K McMillan, M Adler, DS Auld, JJ Baldwin, E Blasko, LJ Browne, D Chelsky, D Davey, RE Dolle, KA Eagen, S Erickson, RI Feldman, CB Glaser, C Mallari, MM Morrissey, MH Ohlmeyer, G Pan, JF Parkinson, GB Phillips, MA Polokoff, NH Sigal, R Vergona, M Whitlow, TA Young, JJ Devlin
    posted to sm ppi intimbal inos allosteric 2000 by higueruelo on 2007-11-26 17:45:05 as read along with 1 person aqeel
  • Cooperativity and biological complexity
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 435-439.
    by Adrian Whitty
    posted to review flexibility allosteric 2008 by higueruelo on 2008-09-05 16:27:00 as ** along with 2 people paulschlesinger phoenixzxl
  • Development of Small Molecule Inhibitors of the AML1-ETO and CBF -SMMHC Oncoproteins.
    ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 1591.
    by Jolanta E Grembecka, Kristin Graf, Yali Kong, Michael Douvas, Tomasz Cierpicki, Anuradha Illendula, Gwen Baber, Izabela Bielnicka, Liya Roudaia, Nancy A Speck, Milton L Brown, John H Bushweller
    posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:33:14 as ***
  • Interactions in Native Binding Sites Cause a Large Change in Protein Dynamics
    Journal of Molecular Biology, Vol. 358, No. 1. (21 April 2006), pp. 213-223.
    by Dengming Ming, Michael E Wall
    posted to 2006 allosteric dynamics by higueruelo on 2008-02-21 14:05:35 as ** along with 2 people aqeel ruvido
  • Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play.
    J Mol Biol (29 February 2008)
    by Chung-Jung J Tsai, Antonio Del Sol, Ruth Nussinov
    posted to 2008 allosteric thermo xf by higueruelo on 2008-03-26 10:27:31 as *** along with 6 people and 3 groups barry choonpeng cactus sobolevnrm CameronNeylon cchang structural_bioinformatics McCammon group
  • Shotgun alanine scanning shows that growth hormone can bind productively to its receptor through a drastically minimized interface.
    J Biol Chem, Vol. 280, No. 27. (8 July 2005), pp. 25524-25532.
    by JL Kouadio, JR Horn, G Pal, AA Kossiakoff
    posted to 2005 alascanning allosteric hgh interface ppi xf by higueruelo on 2008-01-03 18:07:31 as ***
  • Searching for new allosteric sites in enzymes.
    Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 706-715.
    by JA Hardy, JA Wells
    posted to 2004 allosteric review sunesis by higueruelo on 2007-10-06 13:31:38 as ** along with 4 people mdimmic apaydin lna aqeel
  • The CK2alpha/CK2beta Interface of Human Protein Kinase CK2 Harbors a Binding Pocket for Small Molecules.
    Chem Biol, Vol. 15, No. 2. (February 2008), pp. 111-117.
    by J Raaf, E Brunstein, OG Issinger, K Niefind
    posted to 2008 allosteric flexibility kinases sm xf by higueruelo on 2008-03-20 16:52:44 as ***
  • Identification of novel allosteric regulators of human-erythrocyte pyruvate kinase.
    Chem Biodivers, Vol. 4, No. 11. (November 2007), pp. 2603-2617.
    by SS Kharalkar, GS Joshi, FN Musayev, M Fornabaio, DJ Abraham, MK Safo
    posted to 2007 allosteric kinases sm xf by higueruelo on 2008-01-19 11:09:02 as ***
  • Development of Allosteric Inhibitors of the Interaction of AML1 and CBF for the Treatment of Leukemia.
    ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 653.
    by Michael G Douvas, L Roudaiya, J Grembecka, N Speck, JH Bushweller
    posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:36:05 as ***
  • Allosteric Modulation of the Dopamine Receptor by Conformationally Constrained Type VI beta-Turn Peptidomimetics of Pro-Leu-Gly-NH2
    J. Med. Chem., Vol. 50, No. 26. (27 December 2007), pp. 6725-6729.
    by Ashish P Vartak, Kevin Skoblenick, Nancy Thomas, Ram K Mishra, Rodney L Johnson
    posted to 2007 allosteric dopaminer peptidomimetics by higueruelo on 2007-12-20 13:54:03 as **
  • Exploitation of structural and regulatory diversity in glutamate racemases
    Nature, Vol. 447, No. 7146., pp. 817-822.
    by Tomas Lundqvist, Stewart L Fisher, Gunther Kern, Rutger HA Folmer, Yafeng Xue, Trevor D Newton, Thomas A Keating, Richard A Alm, Boudewijn LM de Jonge
    posted to 2007 allosteric astrazeneca xf by higueruelo on 2008-02-03 10:46:27 as ***
  • Coarse-grained model of entropic allostery.
    Phys Rev Lett, Vol. 93, No. 9. (27 August 2004)
    by RJ Hawkins, TC McLeish
    posted to 2004 allosteric flexibility xf by higueruelo on 2008-03-26 10:29:33 as *** along with 2 people lna ruvido
  • A new paradigm for protein kinase inhibition: blocking phosphorylation without directly targeting ATP binding.
    Drug Discov Today, Vol. 12, No. 15-16. (August 2007), pp. 622-633.
    by Marie A A Bogoyevitch, David P P Fairlie
    posted to 2007 allosteric kinases by higueruelo on 2008-02-22 17:32:53 as ** along with 3 people xtizon bicko zimbo1
  • The origin of protein interactions and allostery in colocalization
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 983-990.
    by John Kuriyan, David Eisenberg
    posted to 2007 allosteric ppi xf by higueruelo on 2007-12-21 10:43:31 as *** along with 4 people and 1 group cjeans sobolevnrm mingzhi phoenixzxl baker-group
  • Coupling of global and local vibrational modes in dynamic allostery of proteins.
    Biophys J (23 June 2006)
    by Rhoda J J Hawkins, Tom C B C McLeish
    posted to 2006 allosteric dynamics xf by higueruelo on 2008-03-26 10:30:49 as *** along with 2 people lna choonpeng
  • Discovery of a novel small molecule binding site of human survivin.
    Bioorg Med Chem Lett, Vol. 17, No. 11. (1 June 2007), pp. 3122-3129.
    by MD Wendt, C Sun, A Kunzer, D Sauer, K Sarris, E Hoff, L Yu, DG Nettesheim, J Chen, S Jin, KM Comess, Y Fan, SN Anderson, B Isaac, ET Olejniczak, PJ Hajduk, SH Rosenberg, SW Elmore
    posted to 2007 abbott allosteric ppi sm smac survivin xf by higueruelo on 2008-01-10 12:04:39 as ***
  • Protein-protein interactions in the allosteric regulation of protein kinases
    Current Opinion in Structural Biology, Vol. 16, No. 6. (December 2006), pp. 702-709.
    by Patricia Pellicena, John Kuriyan
    posted to 2006 allosteric kinases ppi by higueruelo on 2007-12-21 10:46:20 as ** along with 2 people lna choonpeng
  • Cyclothiazide binding to functionally active AMPA receptor reveals genuine allosteric interaction with agonist binding sites.
    Neurochem Int, Vol. 44, No. 4. (March 2004), pp. 271-280.
    by I Kovács, A Simon, E Szárics, P Barabás, L Héja, L Nyikos, J Kardos
    posted to allosteric ampa cyclothiazide glu receptor by heja on 2008-02-29 12:10:09 as **
  • Molecular tuning of fast gating in pentameric ligand-gated ion channels.
    Proc Natl Acad Sci U S A, Vol. 102, No. 50. (13 December 2005), pp. 18207-18212.
    by T Grutter, LP de Carvalho, V Dufresne, A Taly, SJ Edelstein, JP Changeux
    posted to allosteric channel ion by Grutter on 2008-02-21 11:03:50 as **
  • Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 673-692.
    by AF Neuwald, N Kannan, A Poleksic, N Hata, JS Liu
    posted to allosteric bioinf_methods contacts core_residues g_proteins ntpases p-loop protein_design protein_dynamics protein_evolution protein_sequence protein_structure by barry to the group Bioinformatics on 2006-01-07 03:57:13 as ***** along with 1 group structural_bioinformatics
  • The structure of Ras protein: a model for a universal molecular switch
    Trends in Biochemical Sciences, Vol. 16 (1991), pp. 382-387.
    by Alfred Wittinghofer, Emil F Pal
    posted to review ras p-loop ntp g_proteins allosteric by barry to the group Bioinformatics on 2007-01-16 20:13:08 as ** along with 1 group structural_bioinformatics
  • Signal Propagation in Proteins and Relation to Equilibrium Fluctuations
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e172.
    by Chakra Chennubhotla, Ivet Bahar
    posted to allosteric correlated_motions nma protein_dynamics protein_structure time_series_analysis by barry to the group Bioinformatics on 2007-09-22 23:29:36 as ***** along with 1 group structural_bioinformatics
  • Molecular dynamics simulations of evolved collective motions of atoms in the myosin motor domain upon perturbation of the ATPase pocket
    Biophysical Chemistry, Vol. 115, No. 1. (1 May 2005), pp. 77-85.
    by Tatsuyuki Kawakubo, Okimasa Okada, Tomoyuki Minami
    posted to allosteric md_simulation myosin pca protein_dynamics by barry to the group Bioinformatics on 2005-09-20 18:41:52 as ***** along with 1 person and 1 group julien_lv structural_bioinformatics
  • A Pathway for the Transmission of Allosteric Signals in the Ribosome through a Network of RNA Tertiary Interactions
    Journal of Molecular Biology, Vol. 355, No. 5. (3 February 2006), pp. 1014-1025.
    by Yuen-Ling Chan, John Dresios, Ira G Wool
    posted to allosteric ribosome by barry to the group Bioinformatics on 2006-01-02 19:17:14 as * along with 1 group structural_bioinformatics
  • Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 2. (2006), pp. 347-361.
    by Kim Sharp, John J Skinner
    posted to protein_structure protein_dynamics md_simulation bioinf_methods allosteric by barry to the group Bioinformatics on 2007-01-30 20:09:59 as **** along with 3 people and 2 groups lna choonpeng sobolevnrm structural_bioinformatics baker-group
  • Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins.
    Proc Natl Acad Sci U S A (9 May 2007)
    by Vincent J J Hilser, E Brad B Thompson
    posted to protein_structure protein_protein protein_dynamics disorder allosteric by barry to the group Bioinformatics on 2007-05-25 01:36:39 as **** along with 5 people and 2 groups apaydin choonpeng cursonivel1 cactus allmensch structural_bioinformatics cursonivel1
  • Long-range allosteric control of cytoplasmic dynein ATPase activity by the stalk and C-terminal domains.
    J Biol Chem (18 July 2005)
    by Peter Höök, Atsushi Mikami, Beth Shafer, Brian T T Chait, Steven S S Rosenfeld, Richard B B Vallee
    posted to allosteric dynein molecular_motors by barry to the group Bioinformatics on 2005-09-19 19:45:30 as ***** along with 1 group structural_bioinformatics
  • Crystal structure of the Awd nucleotide diphosphate kinase from Drosophila.
    Structure, Vol. 1, No. 4. (15 December 1993), pp. 283-293.
    by M Chiadmi, S Moréra, I Lascu, C Dumas, G Le Bras, M Véron, J Janin
    posted to allosteric by ana to the group Bioinformatics on 2006-03-09 21:53:03 as ** along with 1 group structural_bioinformatics
  • Conformational Equilibria and Free Energy Profiles for the Allosteric Transition of the Ribose-binding Protein
    Journal of Molecular Biology, Vol. 353, No. 1. (14 October 2005), pp. 196-210.
    by Krishna P Ravindranathan, Emilio Gallicchio, Ronald M Levy
    posted to allosteric free_energy protein_dynamics sampling umbrella by barry to the group Bioinformatics on 2005-09-24 00:38:20 as ** along with 1 group structural_bioinformatics
  • Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins.
    Science, Vol. 247, No. 4945. (23 February 1990), pp. 939-945.
    by MV Milburn, L Tong, AM deVos, A Brünger, Z Yamaizumi, S Nishimura, SH Kim
    posted to review ras p-loop ntp g_proteins allosteric by barry to the group Bioinformatics on 2007-01-16 20:21:14 as ** along with 4 people and 1 group Einat laurabailey allmensch gloria structural_bioinformatics
  • PAS domains. Common structure and common flexibility.
    J Biol Chem, Vol. 278, No. 20. (16 May 2003), pp. 18434-18439.
    by J Vreede, MA van der Horst, KJ Hellingwerf, W Crielaard, DM van Aalten
    posted to protein_dynamics allosteric by barry to the group Bioinformatics on 2007-01-19 21:58:55 as ** along with 1 group structural_bioinformatics
  • Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion
    Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354.
    by Nobuyuki Ota, David A Agard
    posted to allosteric contacts correlated_motions correlated_mutations md_simulation by barry to the group Bioinformatics on 2006-01-24 18:24:55 as **** along with 3 people and 1 group pansapiens lna choonpeng structural_bioinformatics
  • Evaluation of Energetic and Dynamic Coupling Networks in a PDZ Domain Protein
    Journal of Molecular Biology, Vol. 364, No. 3. (1 December 2006), pp. 337-351.
    by Ernesto J Fuentes, Steven A Gilmore, Randall V Mauldin, Andrew L Lee
    posted to allosteric pdz protein_dynamics protein_structure by barry to the group Bioinformatics on 2006-11-15 19:16:56 as ** along with 2 people and 1 group lna choonpeng structural_bioinformatics
  • Conservation and specialization in PAS domain dynamics.
    Protein Eng Des Sel, Vol. 18, No. 3. (March 2005), pp. 127-137.
    by A Pandini, L Bonati
    posted to protein_dynamics pca allosteric by barry to the group Bioinformatics on 2007-01-19 22:06:49 as ** along with 1 group structural_bioinformatics
  • Allostery: an illustrated definition for the 'second secret of life'
    Trends in biochemical sciences (13 August 2008)
    by Aron W W Fenton
    posted to allosteric review by barry to the group McCammon on 2008-08-29 19:04:37 as ** along with 1 person and 1 group ruvido structural_bioinformatics
  • Local control models of cardiac excitation-contraction coupling. A possible role for allosteric interactions between ryanodine receptors.
    J Gen Physiol, Vol. 113, No. 3. (March 1999), pp. 469-489.
    by MD Stern, LS Song, H Cheng, JS Sham, HT Yang, KR Boheler, E Ríos
    posted to allosteric cardiac contraction control coupling ec excitation interaction local model receptor ryanodine ryr by cherrie to the group CAOS on 2007-03-03 05:01:15 as ****
  • Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 37. (16 September 2008), pp. 13829-13834.
    by SM Sullivan, T Holyoak
    posted to protein_structure protein_dynamics allosteric by barry to the group structural_bioinformatics on 2008-10-02 18:34:06 as ** along with 1 person and 1 group TonyIvetac McCammon
  • Molecular Dynamics Simulation of the Escherichia coli NikR Protein: Equilibrium Conformational Fluctuations Reveal Interdomain Allosteric Communication Pathways
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Michael J Bradley, Peter T Chivers, Nathan A Baker
    posted to allosteric md_simulation by barry to the group structural_bioinformatics on 2008-04-27 22:02:29 as * along with 2 people and 1 group sobolevnrm skoddet baker-group
  • Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism
    Proceedings of the National Academy of Sciences (13 November 2007), 0706443104.
    by Karunesh Arora, Charles L Brooks
    posted to allosteric kinases md_simulation by barry to the group structural_bioinformatics on 2007-11-27 23:23:59 as ** along with 5 people and 1 group allmensch cactus sobolevnrm jlh64 karunesh baker-group
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