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タグ: affinity [119 articles]

Recent papers classified by the tag affinity.
  • A biophysical approach to transcription factor binding site discovery.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2381-2390.
    by M Djordjevic, AM Sengupta, BI Shraiman
    posted to affinity by xili03 on 2008-07-10 02:59:48 as ** along with 2 people dquest discreteonyxorb
  • Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i165-171.
    by Lucas D Ward, Harmen J Bussemaker
    posted to affinity by xili03 on 2008-07-10 02:51:00 as ** along with 1 person maximilianh
  • Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by BC Foat, AV Morozov, HJ Bussemaker
    posted to affinity by xili03 on 2008-07-10 06:33:06 as ** along with 3 people dquest lusk yevishere
  • Predicting transcription factor affinities to DNA from a biophysical model.
    Bioinformatics (10 November 2006)
    by Helge Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
    posted to affinity by xili03 on 2008-07-10 05:16:38 as ** along with 2 people and 1 group indigoviolet dpollard EisenLab
  • Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation
    Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 99-108.
    by Moshe Pritsker, Yir-Chung Liu, Michael A Beer, Saeed Tavazoie
    posted to affinity by xili03 on 2008-07-10 05:13:22 as ** along with 2 people kaarsinogen koller
  • Capturing high-level image concepts via affinity relationships in image database retrieval
    Multimedia Tools and Applications, Vol. 32, No. 1. (January 2007), pp. 73-92.
    by Shyu, Mei-Ling, Chen, Shu-Ching, Chen, Min, Zhang, Chengcui, Sarinnapakorn, Kanoksri
    posted to mtap_07 high-level_concept affinity by violet_v on 2008-07-02 18:28:19 as * along with 1 person mthomure
  • Effect of low temperature on microbial growth: lowered affinity for substrates limits growth at low temperature
    FEMS Microbiology Ecology, Vol. 30, No. 2. (1999), pp. 101-111.
    by DB Nedwell
    posted to warming thermal temperature specificity membrane low global fluidity affinity adaptation articles by tomrevilla on 2008-03-25 09:42:58 as ***
  • Selection by temperature of nitrate-reducing bacteria from estuarine sediments: species composition and competition for nitrate
    FEMS Microbiology Ecology, Vol. 23, No. 1. (1997), pp. 11-22.
    by BG Ogilvie, M Rutter, DB Nedwell
    posted to uptake temperature specific selection nitrate-reducing nitrate bacteria affinity articles denitrification by tomrevilla on 2008-03-25 09:58:08 as **
  • Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes.
    Eur J Biochem, Vol. 270, No. 4. (February 2003), pp. 570-578.
    by A Bauer, B Kuster
    posted to affinity purification-mass review spec by stonest on 2007-06-21 19:22:30 as **** along with 3 people and 1 group carlk helenc bala DictyosteliumGroup
  • Clustering by Passing Messages Between Data Points.
    Science (11 January 2007)
    by Brendan J J Frey, Delbert Dueck
    posted to affinity affinity-propagation clustering random-walks by sterovetta on 2007-05-06 19:39:53 as **** along with 25 people and 2 groups iris_2001 soundray XIANG matjes johnkork kuhn xtizon jfr jmeppley stevedebacker arjen sdvillal nickluscombe rdiaz ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 EBI-regulation ParkinsonLab_at_MaRS
  • notes Towards a Paradigm Change in Computer Science and Software Engineering: A Synthesis
    by Franco Zambonelli, Van Dyke
    posted to 3rd-generation ad-hoc affinity agents folksonomy multi-agents paradigm-shift routing scalable by scottmoody on 2005-11-08 20:25:28 as read along with 1 group semantic-multicast-routing
  • Deterministic Scale-Free Networks
    (6 Feb 2002)
    by Albert-Laszlo Barabasi, Erzsebet Ravasz, Tamas Vicsek
    posted to affinity aggregation scale-free scalefree-networks by scottmoody on 2005-11-06 17:18:10 as **** along with 8 people and 4 groups korakot ansobol jrw ChaTo bluebird MaineC srinaths lyongu Philosophy_of_Information Blog_and_Wiki_Research semantic-multicast-routing oktave-labs
  • NiagaraCQ: a scalable continuous query system for Internet databases
    (2000), pp. 379-390.
    by Jianjun Chen, David J Dewitt, Feng Tian, Yuan Wang
    posted to affinity aggregation continuous-query by scottmoody on 2005-11-16 20:22:53 as **** along with 2 people and 2 groups rahul scis0000001 semantic-multicast-routing SRL
  • Trust Propagation in Small Worlds
    Lecture Notes in Computer Science, Vol. 2692 (January 2003), pp. 239-254.
    by Elizabeth Gray, Jean-Marc Seigneur, Yong Chen, Christian Jensen
    posted to affinity security self-organizing by scottmoody on 2005-12-01 17:46:52 as ** along with 6 people and 3 groups korakot rsoderberg JmSeigneur lyongu davidhu kingsunshine Philosophy_of_Information Blog_and_Wiki_Research semantic-multicast-routing
  • The structure and function of complex networks
    (25 March 2003)
    by MEJ Newman
    posted to affinity by scottmoody on 2005-12-01 17:45:02 as **** along with 47 people and 14 groups rrbarb apwesolowski dpf thecolourblue SimonGarnier phauly snuppepuppan korakot trunov karbak rmj001 mrm Nichtich pdlug xxc momonga nkorf ChaTo imouthesmp ldietz rahul tuck lyongu cwoodward yish ddahlem danieltruemper gane5h fukken AbnerCYH anon_pl shashikant esayre azygmunt adriandefroment kray carolaccs mylit ransombriggs theus jmarcelino salvoscellato Kwisatz ffloeck AnneB daniel51 xleonzhao Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST IS-Lab Semantic-Social-Networks Wikipedia mathgamespatterns semantic-multicast-routing SRL dtl vds-arg eni AGH-IISG CSBBGraphTheory
  • Network laws
    Commun. ACM, Vol. 47, No. 11. (November 2004), pp. 15-20.
    by Peter J Denning
    posted to affinity aggregation architecture scale-free by scottmoody on 2005-11-05 16:05:48 as ** along with 2 people and 1 group mercutio stagediver semantic-multicast-routing
  • Why social networks are different from other types of networks
    (26 May 2003)
    by MEJ Newman, Juyong Park
    posted to affinity scalefree-networks social-networks by scottmoody on 2006-01-13 17:37:42 as ** along with 41 people and 20 groups rrbarb nataliaibanez korakot A_Olympia pdlug FG mcphee mague momonga tautai MaineC seabay rhetor stagediver yish sids balicea locatellimp judalicious danieltruemper pmoore jhammerb cmm kifffkifff fukken ak bigbossman merazzle suo dwest graphminer sugarexpletive azygmunt ltabourier fmoerth anansi cooldenny ket Ignatia lmichan kamccollum Philosophy_of_Information Blog_and_Wiki_Research CSCW IS-Lab OpenArchive mathgamespatterns Online_Collaboration Online_Communities semantic-multicast-routing folksonomy dtl P2P XMLDataManagement vds-arg eni FAB-lab suogroup AGH-IISG oktave-labs Social Web
  • Linked
    (2002)
    by Albert-Laszlo Barabasi
    posted to affinity aggregation scalable scale-free by scottmoody on 2005-11-05 15:04:09 as read along with 19 people and 6 groups phauly mercutio korakot A_Olympia mariachiara elijahwright m00se lijil AdrianMiles alifeleti breyten indratmo Rsavi bj bicudo ddahlem alikocho marymcglo koles Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST semantic-multicast-routing The_Truants ilps
  • notes An Efficient Multicast Protocol for Content-Based Publish-Subscribe Systems
    (1999)
    posted to affinity content-routing protocol scalable semantic-multicast by scottmoody on 2005-11-10 00:48:00 as ** along with 1 group semantic-multicast-routing
  • The rise of social software
    netWorker, Vol. 7, No. 3. (September 2003), pp. 18-23.
    by Michele Tepper
    posted to affinity folksonomy social-networks by scottmoody on 2006-01-17 04:15:58 as ** along with 33 people and 16 groups draggin fernand0 qaramazov korakot JeffreyPalmer PatrickD rickl tyfn mote tglaisyer rasca jamieanderson1968 lijil alifeleti indratmo Rsavi alisonruth wcrosbie jryall cyph3r kate_waxlyrical GeneDebs paulteusner Ewan_Pohe ak mheckner hkl oertel59 fmccown jxgzhq thesis2007 stutteringdeer drakkos69 Philosophy_of_Information Blog_and_Wiki_Research CHISEL ASR ISI NLP SLA Wikipedia CoP_CMS semantic-multicast-routing ETEC533 LanguageAndBrain SITCRC The_Truants kickOffTUG-Robocup elearning_research
  • Referral Web: Combining Social Networks and Collaborative Filtering
    by Henry Kautz, Bart Selman, Mehul Shah
    posted to affinity folksonomy small-world social-networks by scottmoody on 2006-01-17 04:14:23 as ** along with 46 people and 20 groups JoyMak mpotamias hsiaowei camster phauly rabourn UnodeWaal sourada lior korakot magnusenger JeffreyPalmer PatrickD rickl warters devzero tglaisyer leei macartisan palakorn miriam garyfeng xxc freecia Rsavi skirsch ldietz dfrankow wcrosbie vaasu balicea shilad stacyall craigtalbert ethomsen ianturton ak gagliol josepe mattlandau JimFolk mjchernyk paulomagalhaes amirmz casst122 ejetstream Philosophy_of_Information DocSci Blog_and_Wiki_Research SRA_at_IRST Drexel-HCI ReadingLab ubc-ucl Drexel-eVoting GroupLens Wikipedia OpenArchive CoP_CMS semantic-multicast-routing ETEC533 Usable_Security Netmob P2P CSU_School_of_Education Web2-0_Education Social Web
  • Power laws, Pareto distributions and Zipf's law
    (1 December 2004)
    by MEJ Newman
    posted to affinity powerlaws scale-free scalefree-networks small-world by scottmoody on 2006-01-17 04:10:46 as **** along with 42 people and 7 groups skheller quianominorleo ulmer pietrosperoni egh korakot sccook sriks6711 mafwood A_Olympia JeffreyPalmer derek_farn ansobol devzero nigini yaroslavvb lubrifix mague mapio ecolab garyfeng ChaTo yishuai Borelli bayesian lyongu balicea mukundn proportional entropy scis0000001 bigbossman cristinaalp merazzle sugarexpletive mp4man MoritzStefaner mylit gi0rgi0ne ejazasi salvoscellato ruffini Philosophy_of_Information Blog_and_Wiki_Research ReadingLab 18th-century_history_culture_and_society semantic-multicast-routing Web2 EntrepreneurialRisks
  • Crossing the structure chasm
    (2003)
    by A Halevy, O Etzioni, A Doan, Z Ives, J Madhavan, L Mcdowell, I Tatarinov
    posted to affinity by scottmoody on 2006-01-17 04:05:02 as ** along with 2 people and 1 group JeffreyPalmer goltus semantic-multicast-routing
  • Ambient Findability
    (26 September 2005)
    by Peter Morville
    posted to affinity folksonomy scalable scale-free by scottmoody on 2005-12-13 09:48:04 as ***** along with 52 people and 19 groups quianominorleo qbu rex draggin rabourn rickl neilernst tyfn fmatthes scholz riadlem alisonruth klever wcrosbie anarchitect cephas Jenneke slariccia stagediver hc epaterson kbuxton hannont spinster Anon lauggh umbra googya dartar meikipp deniset beatty sjp6 voiklis Susie jodi ak rashford Ghaylam jamesjbrownjr avivagabriel pins hopetillman mzygmunt astab OriginalLurch jgrann mistermagister nerdbasher msampson lauras Carol_Perryman Blog_and_Wiki_Research CSCW Sociology Librarians Ubicomp Wikipedia CoP_CMS semantic-multicast-routing folksonomy ETEC533 what_is_a_library SITCRC atomique WatzekLibrary EnvironmentalStudies cogweb ColDyn clab MASSS
  • Talk and Draw: Bundling Speech and Graphics
    Computer, Vol. 23, No. 8. (August 1990), pp. 59-65.
    by Mark W Salisbury, Joseph H Hendrickson, Terence L Lammers, Caroline Fu, Scott A Moody
    posted to affinity aggregation speech by scottmoody on 2005-11-17 20:01:41 as read along with 1 group semantic-multicast-routing
  • Expression of sodium channels with different saxitoxin affinity during rat forebrain development
    Developmental Brain Research, Vol. 81, No. 1. (12 August 1994), pp. 26-40.
    by Raimundo Villegas, Cecilia Castillo, Maria E Poo, Santiago Schnell, Carolina Piernavieja, Domingo Balbi, Gloria M Villegas
    posted to affinity channel forebrain mrna receptor saxitoxin single sodium by schnell on 2006-10-21 00:30:37 as *** along with 1 group IU_Informatics_CX
  • The phosphinomethylmalate isomerase gene pmi, encoding an aconitase-like enzyme, is involved in the synthesis of phosphinothricin tripeptide in Streptomyces viridochromogenes.
    Appl Environ Microbiol, Vol. 67, No. 8. (August 2001), pp. 3603-3609.
    by E Heinzelmann, G Kienzlen, S Kaspar, J Recktenwald, W Wohlleben, D Schwartz
    posted to affinity biosynthesis fusion histag streptomyces by robert on 2006-02-08 14:59:17 as **
  • Affinity fusion strategies for detection, purification, and immobilization of recombinant proteins.
    Protein Expr Purif, Vol. 11, No. 1. (October 1997), pp. 1-16.
    by J Nilsson, S Ståhl, J Lundeberg, M Uhlén, PA Nygren
    posted to affinity detection expression fusion immobilisation purification by robert on 2006-02-08 11:45:10 as **
  • Genetic design for facilitated production and recovery of recombinant proteins in Escherichia coli.
    Biotechnol Appl Biochem, Vol. 35, No. Pt 2. (April 2002), pp. 91-105.
    by P Jonasson, S Liljeqvist, Pa Nygren, S Stahl
    posted to affinity ecoli expression fusion purification by robert on 2006-02-08 11:37:19 as **
  • On the nature of low- and high-affinity EGF receptors on living cells.
    Proc Natl Acad Sci U S A, Vol. 103, No. 15. (11 April 2006), pp. 5735-5740.
    by F Ozcan, P Klein, MA Lemmon, I Lax, J Schlessinger
    posted to affinity egfr by pjasper on 2007-04-25 19:25:06 as **
  • Single-amino acid substitutions alter the specificity and affinity of PDZ domains for their ligands.
    Biochemistry, Vol. 39, No. 47. (28 November 2000), pp. 14638-14646.
    by SH Gee, S Quenneville, CR Lombardo, J Chabot
    posted to affinity pdz by pdelosri on 2006-11-07 19:54:07 as ** along with 1 group EPFL_SB_ITP_LBS
  • Substrate specificity of the DnaK chaperone determined by screening cellulose-bound peptide libraries.
    EMBO J, Vol. 16, No. 7. (1 April 1997), pp. 1501-1507.
    by S Rüdiger, L Germeroth, J Schneider-Mergener, B Bukau
    posted to affinity dnak hsp70 by pdelosri on 2006-11-19 13:58:21 as ** along with 1 group EPFL_SB_ITP_LBS
  • Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain.
    J Biol Chem, Vol. 278, No. 9. (28 February 2003), pp. 7645-7654.
    by NJ Skelton, MF Koehler, K Zobel, WL Wong, S Yeh, MT Pisabarro, JP Yin, LA Lasky, SS Sidhu
    posted to affinity pdz specificity structure by pdelosri on 2006-11-07 22:10:50 as ** along with 1 group EPFL_SB_ITP_LBS
  • Analysis of PDZ domain-ligand interactions using carboxyl-terminal phage display.
    J Biol Chem, Vol. 275, No. 28. (14 July 2000), pp. 21486-21491.
    by G Fuh, MT Pisabarro, Y Li, C Quan, LA Lasky, SS Sidhu
    posted to affinity pdz phage-display specificity by pdelosri on 2006-11-07 22:08:14 as ** along with 1 group EPFL_SB_ITP_LBS
  • Binding affinities and non-bonded interaction energies
    Perspectives in Drug Discovery and Design, Vol. 9-11, No. 0. (January 1998), pp. 99-114.
    by Ronald M Knegtel, Peter D Grootenhuis
    posted to affinity binding model by papatonyhill on 2006-06-14 01:24:30 as ****
  • Molecular modelling probes: docking and scoring.
    Biochem Soc Trans, Vol. 31, No. Pt 5. (October 2003), pp. 980-984.
    by RT Kroemer
    posted to affinity binding docking model by papatonyhill on 2006-06-14 01:23:01 as **** along with 2 people alexg kazemi
  • Protein ligand docking based on empirical method for binding affinity estimation
    Journal of Computer-Aided Molecular Design, Vol. 15, No. 5. (May 2001), pp. 429-446.
    by Peng Tao, Luhua Lai
    posted to affinity binding docking model by papatonyhill on 2006-06-14 01:15:11 as ****
  • SCORE: A New Empirical Method for Estimating the Binding Affinity of a Protein-Ligand Complex
    Journal of Molecular Modeling, Vol. 4, No. 12. (December 1998), pp. 379-394.
    by Renxiao Wang, Liang Liu, Luhua Lai, Youqi Tang
    posted to affinity binding docking model by papatonyhill on 2006-06-14 00:52:17 as **** along with 1 person superpyrin
  • A molecular mechanics/grid method for evaluation of ligand-receptor interactions
    Journal of Computational Chemistry, Vol. 16, No. 4. (1995), pp. 454-464.
    by Brock A Luty, Zelda R Wasserman, Pieter FW Stouten, Nicholas C Hodge, Martin Zacharias, Andrew J Mccammon
    posted to affinity binding docking model solvation by papatonyhill on 2006-06-14 00:50:36 as ***** along with 1 person and 2 groups sangeetha Bioinformatics insilicodrug
  • Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    Journal of Computational Chemistry, Vol. 19, No. 14. (6 January 1999), pp. 1639-1662.
    by Garrett M Morris, David S Goodsell, Robert S Halliday, Ruth Huey, William E Hart, Richard K Belew, Arthur J Olson
    posted to affinity algorithm autodock binding genetic by P2324548 on 2005-08-09 16:38:15 as ** along with 12 people and 1 group simone andreramme LamBras dgruiz nachtalp yongzhao peprovy tovrstra papatonyhill schlauchi carlescorbi middledomain TSRI_MGL
  • Predicting binding modes, binding affinities and `hot spots' for protein-ligand complexes using a knowledge-based scoring function
    Perspectives in Drug Discovery and Design, Vol. 20, No. 1. (January 2000), pp. 115-144.
    by Holger Gohlke, Manfred Hendlich, Gerhard Klebe
    posted to affinity binding docking function interactions knowledge-based protein-ligand scoring screening virtual by P2324548 on 2005-06-09 10:56:07 as ** along with 1 person tjimenez
  • Situated Language and Learning
    (01 September 2004)
    by James P Gee
    posted to affinity groups by NML on 2006-06-28 21:26:12 as ** along with 2 people tystl sjones
  • Affinity as a tool in life science.
    BioTechniques, Vol. 44, No. 5. (April 2008), pp. 649-654.
    by M Uhlén
    posted to antibody-array antibody antibodies affinity-proteomics affinity by niallhaslam on 2008-06-19 10:06:57 as read along with 1 person jyuh
  • Affinity maturation of antibodies assisted by in silico modeling
    Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 9029-9034.
    by Rodrigo Barderas, Johan Desmet, Peter Timmerman, Rob Meloen, Ignacio J Casal
    posted to protein-design protein affinity-proteomics affinity by niallhaslam on 2008-07-02 10:14:24 as *****
  • Antibody microarray-based oncoproteomics
    Expert Opinion on Biological Therapy, Vol. 6, No. 8. (August 2006), pp. 833-838.
    by Borrebaeck, Carl Ak
    posted to affinity protein-array protein-interaction protein-protein proteomics by niallhaslam on 2008-04-22 09:45:43 as *****
  • Affinity reagent resources for human proteome detection: Initiatives and perspectives
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by Oda Stoevesandt, Michael J Taussig
    posted to affinity immunoinformatics protein proteomics by niallhaslam on 2008-04-22 09:45:07 as ***** along with 1 person jyuh
  • A General System for Studying Protein-Protein Interactions in Gram-Negative Bacteria
    J. Proteome Res. (1 July 2008)
    by Dale A Pelletier, Gregory B Hurst, Linda J Foote, Patricia K Lankford, Catherine K Mckeown, Tse-Yuan Lu, Denise D Schmoyer, Manesh B Shah, Judson W Hervey, Hayes W Mcdonald, Brian S Hooker, William R Cannon, Don S Daly, Jason M Gilmore, Steven H Wiley, Deanna L Auberry, Yisong Wang, Frank W Larimer, Stephen J Kennel, Mitchel J Doktycz, Jennifer L Morrell-Falvey, Elizabeth T Owens, Michelle V Buchanan
    posted to tag protein-protein interaction bacteria affinity by neils on 2008-07-01 13:24:33 as ** along with 1 person brianb
  • Ligand binding affinity prediction by linear interaction energy methods
    Journal of Computer-Aided Molecular Design, Vol. 12, No. 1. (1 January 1998), pp. 27-35.
    by Tomas Hansson, John Marelius, Johan Åqvist
    posted to affinity binding bioinformatics lie ligand prediction by neils on 2008-04-15 02:18:54 as **
  • The membrane bioreactor: A novel tool to grow anammox bacteria as free cells.
    Biotechnology and bioengineering (12 March 2008)
    by Wouter R L R van der Star, Andreea I I Miclea, Udo G J M G van Dongen, Gerard Muyzer, Cristian Picioreanu, Mark C M C van Loosdrecht
    posted to switch reactor population ks growth anammox affinity by mjetten on 2008-05-01 09:40:27 as read along with 1 person and 2 groups Pascalichouchou microbiology_nijmegen anammox
  • Proteomics/genomics and signaling in lymphocytes
    Current Opinion in Immunology, Vol. 16, No. 3. (June 2004), pp. 337-344.
    by Bernd Wollscheid, Julian D Watts, Ruedi Aebersold
    posted to acids affinity amino cell coded culture icat in interference isotope labeling purification rna rnai silac stable tag tandem tap with by marie-aline on 2007-08-28 12:58:44 as read along with 1 person and 1 group Fsilvestre ecotoxurbo
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