新規登録 | ログイン | FAQ      [?] 

タグ: 454 [69 articles]

Recent papers classified by the tag 454.
  • Pyrosequencing enumerates and contrasts soil microbial diversity
    ISME J, Vol. 1, No. 4. (5 July 2007), pp. 283-290.
    by Luiz F Roesch, Roberta R Fulthorpe, Alberto Riva, George Casella, Alison K Hadwin, Angela D Kent, Samira H Daroub, Flavio A Camargo, William G Farmerie, Eric W Triplett
    posted to 454 by vrich on 2008-05-11 23:34:38 as ** along with 1 person darioacha
  • Metagenomic and small-subunit rRNA analyses of the genetic diversity of bacteria, archaea, fungi, and viruses in soil
    Appl. Environ. Microbiol. (7 September 2007), AEM.00358-07.
    by Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B Jackson
    posted to 16srrna 454 community_genomics by vrich on 2008-05-11 22:42:32 as ** along with 2 people mellabee kerekesj
  • Bacterial carbon processing by generalist species in the coastal ocean
    Nature (27 January 2008)
    by Xiaozhen Mou, Shulei Sun, Robert A Edwards, Robert E Hodson, Mary A Moran
  • Short pyrosequencing reads suffice for accurate microbial community analysis
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120.
    by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D Bushman, Rob Knight
  • Bacterial flora typing with deep, targeted, chip-based Pyrosequencing
    BMC Microbiology, Vol. 7 (30 November 2007), 108.
    by Andreas Sundquist, Saharnaz Bigdeli, Roxana Jalili, Maurice L Druzin, Sarah Waller, Krisin M Pullen, Yasser Y El-Sayed, Mark M Taslimi, Serafim Batzoglou, Mostafa Ronaghi
    posted to 16srrna 454 by vrich on 2008-05-11 23:39:56 as **
  • Phylogenetic classification of short environmental DNA fragments
    Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2230-2239.
    by Lutz Krause, Naryttza N Diaz, Alexander Goesmann, Scott Kelley, Tim W Nattkemper, Forest Rohwer, Robert A Edwards, Jens Stoye
    posted to 454 community_genomics taxonomy by vrich on 2008-05-09 00:04:42 as **
  • Metagenomics: Read length matters
    Appl. Environ. Microbiol. (11 January 2008), AEM.02181-07.
    by Eric K Wommack, Jaysheel Bhavsar, Jacques Ravel
  • Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol, Vol. 144, No. 1. (May 2007), pp. 32-42.
    by AP Weber, KL Weber, K Carr, C Wilkerson, JB Ohlrogge
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
  • Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
    BMC Genomics, Vol. 7 (29 September 2006), 246.
    by Matthew N Bainbridge, Rene L Warren, Martin Hirst, Tammy Romanuik, Thomas Zeng, Anne Go, Allen Delaney, Malachi Griffith, Matthew Hickenbotham, Vincent Magarini, Elaine R Mardis, Marianne D Sadar, Asim S Siddiqui, Marco A Marra, Steven JM Jones
    posted to 454 sequencer by usagi-kirin on 2007-08-24 18:22:39 as **
  • Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology
    BMC Genomics, Vol. 7 (24 October 2006), 272.
    by Foo Cheung, Brian J Haas, Susanne MD Goldberg, Gregory D May, Yongli Xiao, Christopher D Town
  • Robust analysis of 5'-transcript ends (5'-RATE): a novel technique for transcriptome analysis and genome annotation.
    Nucleic Acids Res, Vol. 34, No. 19. (2006)
    by M Gowda, H Li, J Alessi, F Chen, R Pratt, GL Wang
    posted to 454 sequencer by usagi-kirin on 2007-08-24 18:10:03 as ** along with 1 person jyuh
  • Gene discovery and annotation using LCM-454 transcriptome sequencing.
    Genome Res, Vol. 17, No. 1. (January 2007), pp. 69-73.
    by SJ Emrich, WB Barbazuk, L Li, PS Schnable
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
  • 454 sequencing put to the test using the complex genome of barley
    BMC Genomics, Vol. 7 (26 October 2006), 275.
    by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein
  • Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
    BMC Genomics, Vol. 8 (24 May 2007), 132.
    by Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson
  • Gene expression profiling by massively parallel sequencing
    Genome Res. (21 November 2007), gr.6984908.
    by Tatiana T Torres, Muralidhar Metta, Birgit Ottenwalder, Christian Schlotterer
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
  • Somatosensory cortex responses to median nerve stimulation: fMRI effects of current amplitude and selective attention.
    Clin Neurophysiol, Vol. 111, No. 10. (October 2000), pp. 1738-1744.
    posted to 454 by SinghalLab on 2007-05-23 18:06:40 as **
  • A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, Vol. 2, No. 12. (2007)
    posted to assembly 454 by semrich on 2008-10-01 14:33:50 as ***** along with 1 person natstreet
  • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    Nature Methods, Vol. 5, No. 3. (10 February 2008), pp. 235-237.
    by Micah Hamady, Jeffrey J Walker, Kirk J Harris, Nicholas J Gold, Rob Knight
  • A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder.
    Science (6 September 2007)
    by Diana L L Cox-Foster, Sean Conlan, Edward C C Holmes, Gustavo Palacios, Jay D D Evans, Nancy A A Moran, Phenix-Lan L Quan, Thomas Briese, Mady Hornig, David M M Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K Hutchison, Jan Fredrik F Simons, Michael Egholm, Jeffery S S Pettis, W Ian I Lipkin
  • A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases
    N Engl J Med, Vol. 358, No. 10. (6 March 2008), pp. 991-998.
    by Gustavo Palacios, Julian Druce, Lei Du, Thomas Tran, Chris Birch, Thomas Briese, Sean Conlan, Phenix-Lan Quan, Jeffrey Hui, John Marshall, Jan F Simons, Michael Egholm, Christopher D Paddock, Wun-Ju Shieh, Cynthia S Goldsmith, Sherif R Zaki, Mike Catton, Ian W Lipkin
    posted to 454 metagenomics self virus by sconlan on 2008-07-03 20:42:57 as read along with 1 person oelemento
  • SNP discovery via 454 transcriptome sequencing
    The Plant Journal, Vol. 51, No. 5. (September 2007), pp. 910-918.
  • High-throughput sequence alignment using Graphics Processing Units
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney
  • Annotation of metagenome short reads using proxygenes
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i7-13.
    by Daniel Dalevi, Natalia N Ivanova, Konstantinos Mavromatis, Sean D Hooper, Ernest Szeto, Philip Hugenholtz, Nikos C Kyrpides, Victor M Markowitz
    posted to 454 annotation genome metagenomics by neils on 2008-08-11 00:33:57 as **
  • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.
    Genome Res (5 September 2006)
    by Cheng Lu, Karthik Kulkarni, Frédéric F F Souret, Ramesh Muthuvalliappan, Shivakundan Singh S Tej, R Scott S Poethig, Ian R R Henderson, Steven E E Jacobsen, Wenzhong Wang, Pamela J J Green, Blake C C Meyers
  • Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 910-916.
    by AA Bhinge, J Kim, GM Euskirchen, M Snyder, VR Iyer
  • Microbial Population Structures in the Deep Marine Biosphere
    Science, Vol. 318, No. 5847. (5 October 2007), pp. 97-100.
    by Julie A Huber, David B Welch, Hilary G Morrison, Susan M Huse, Phillip R Neal, David A Butterfield, Mitchell L Sogin
  • Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???.
    by Linda Wegley, Robert Edwards, Beltran Rodriguez-Brito, Hong Liu, Forest Rohwer
    posted to 2007 454 ht_sequencing marine metagenomics by hpaces on 2008-07-29 15:49:44 as ** along with 2 people bluto vrich
  • Data handling strategies for high throughput pyrosequencers.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    posted to 454 by GustavoLacerda on 2007-10-06 21:01:46 as ** along with 2 people ghattem bozdagd
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
  • The Genome Sequencer FLX(TM) System--Longer reads, more applications, straight forward bioinformatics and more complete data sets
    Journal of Biotechnology, Vol. In Press, Corrected Proof
    by Marcus Droege, Brendon Hill
    posted to 454 by GustavoLacerda on 2008-08-21 04:24:18 as **
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
  • Molecular biology: Power sequencing
    Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1197-1198.
    by Brenton R Graveley
  • Genome assembly forensics: finding the elusive mis-assembly
    Genome Biology, Vol. 9 (14 March 2008), R55.
    by Adam M Phillippy, Michael C Schatz, Mihai Pop
    posted to 454 assembly by GustavoLacerda on 2008-07-07 13:50:55 as ** along with 4 people druvus fernan lp2 Neeperando
  • Assembling genomes on large-scale parallel computers
    Journal of Parallel and Distributed Computing, Vol. In Press, Corrected Proof
    posted to 454 by GustavoLacerda on 2007-11-25 00:17:58 as **
  • The year of sequencing
    Nature Methods, Vol. 5, No. 1., pp. 11-14.
    by Kelly R Chi
    posted to 454 by GustavoLacerda on 2008-02-07 16:43:32 as **
  • EagleView: a genome assembly viewer for next-generation sequencing technologies.
    Genome research (11 June 2008)
    by Weichun Huang, Gabor T T Marth
  • OSLay: optimal syntenic layout of unfinished assemblies
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1573-1579.
    by Daniel C Richter, Stephan C Schuster, Daniel H Huson
    posted to 454 assembly by GustavoLacerda on 2008-02-07 17:23:06 as **
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
  • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.
    Proc Natl Acad Sci U S A (13 July 2006)
    by Susanne M D M Goldberg, Justin Johnson, Dana Busam, Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A A Kravitz, Federico M M Lauro, Kelvin Li, Yu-Hui H Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J Craig C Venter
  • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Evandro Novaes, Derek Drost, William Farmerie, Georgios Pappas, Dario Grattapaglia, Ronald Sederoff, Matias Kirst
    posted to 454 est by GustavoLacerda on 2008-08-16 22:39:20 as ** along with 3 people natstreet gpappas neils
  • Common Functions for Diverse Small RNAs of Land Plants.
    Plant Cell (29 June 2007)
    by Michael J J Axtell, Jo Ann A Snyder, David P P Bartel
    posted to plant mirna 454 by andersbj to the group microRNA on 2007-07-04 09:21:37 as ***** along with 1 person and 1 group stajich Berkeley Mycology
  • Diversity of microRNAs in human and chimpanzee brain.
    Nat Genet (29 October 2006)
    by Eugene Berezikov, Fritz Thuemmler, Linda W W van Laake, Ivanela Kondova, Ronald Bontrop, Edwin Cuppen, Ronald H A H Plasterk
  • A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414.
  • High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes.
    PLoS ONE, Vol. 2 (2007)
    by N Fahlgren, MD Howell, KD Kasschau, EJ Chapman, CM Sullivan, JS Cumbie, SA Givan, TF Law, SR Grant, JL Dangl, JC Carrington
    posted to 454 arabidopsis mirna nonconserved by andersbj to the group microRNA on 2007-02-15 20:24:27 as ***** along with 3 people tardigrade jmjimenez natstreet
  • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
    Genes Dev, Vol. 20, No. 24. (15 December 2006), pp. 3407-3425.
  • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560.
    by Yuichi Hongoh, Vineet K Sharma, Tulika Prakash, Satoko Noda, Todd D Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma
  • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/tag/454

    Result page: 1 2 Next RIS BibTeX