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<pubDate>Fri, 25 Jul 2008 15:15:57 BST</pubDate>


	<title>CiteULike: cactus polymerization</title>
	<description>CiteULike: cactus polymerization</description>


	<link>http://www.citeulike.org/user/cactus/tag/polymerization</link>
	<dc:publisher>CiteULike.org</dc:publisher>
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	<dc:rights>Copyright &#169; 2004-2008 citeulike.org</dc:rights>
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        <rdf:li rdf:resource="http://www.citeulike.org/user/cactus/article/2744934"/>
        <rdf:li rdf:resource="http://www.citeulike.org/user/cactus/article/2681463"/>
        <rdf:li rdf:resource="http://www.citeulike.org/user/cactus/article/1324508"/>

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<item rdf:about="http://www.citeulike.org/user/cactus/article/2744934">
    <title>The lattice as allosteric effector: Structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly</title>
    <link>http://www.citeulike.org/user/cactus/article/2744934</link>
    <description>&lt;i&gt;Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5378-5383.&lt;/i&gt;&lt;br /&gt;&lt;br /&gt;GTP-dependent microtubule polymerization dynamics are required for cell division and are accompanied by domain rearrangements in the polymerizing subunit, alpha-tubulin. Two opposing models describe the role of GTP and its relationship to conformational change in alpha-tubulin. The allosteric model posits that unpolymerized alpha-tubulin adopts a more polymerization-competent conformation upon GTP binding. The lattice model posits that conformational changes occur only upon recruitment into the growing lattice. Published data support a lattice model, but are largely indirect and so the allosteric model has prevailed. We present two independent solution probes of the conformation of alpha-tubulin, the 2.3 A crystal structure of gamma-tubulin bound to GDP, and kinetic simulations to interpret the functional consequences of the structural data. These results (with our previous gamma-tubulin:GTPgammaS structure) support the lattice model by demonstrating that major domain rearrangements do not occur in eukaryotic tubulins in response to GTP binding, and that the unpolymerized conformation of alpha-tubulin differs significantly from the polymerized one. Thus, geometric constraints of lateral self-assembly must drive alpha-tubulin conformational changes, whereas GTP plays a secondary role to tune the strength of longitudinal contacts within the microtubule lattice. alpha-Tubulin behaves like a bent spring, resisting straightening until forced to do so by GTP-mediated interactions with the growing microtubule. Kinetic simulations demonstrate that resistance to straightening opposes microtubule initiation by specifically destabilizing early assembly intermediates that are especially sensitive to the strength of lateral interactions. These data provide new insights into the molecular origins of dynamic microtubule behavior. 10.1073/pnas.0801155105</description>
    <dc:title>The lattice as allosteric effector: Structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly</dc:title>

    <dc:creator>Luke Rice</dc:creator>
    <dc:creator>Elizabeth Montabana</dc:creator>
    <dc:creator>David Agard</dc:creator>
    <dc:identifier>doi:10.1073/pnas.0801155105</dc:identifier>
    <dc:source>Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5378-5383.</dc:source>
    <dc:date>2008-05-02T10:24:15-00:00</dc:date>
    <prism:publicationYear>2008</prism:publicationYear>
    <prism:publicationName>Proceedings of the National Academy of Sciences</prism:publicationName>
    <prism:volume>105</prism:volume>
    <prism:number>14</prism:number>
    <prism:startingPage>5378</prism:startingPage>
    <prism:endingPage>5383</prism:endingPage>
    <prism:category>allostery</prism:category>
    <prism:category>kinetics</prism:category>
    <prism:category>polymerization</prism:category>
    <prism:category>simulation</prism:category>
    <prism:category>structural_change</prism:category>
    <prism:category>xray-crystal-structure</prism:category>
</item>



<item rdf:about="http://www.citeulike.org/user/cactus/article/2681463">
    <title>A Cytoskeletal Demolition Worker: Myosin II Acts as an Actin Depolymerization Agent</title>
    <link>http://www.citeulike.org/user/cactus/article/2681463</link>
    <description>&lt;i&gt;Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 325-330.&lt;/i&gt;&lt;br /&gt;&lt;br /&gt;Myosin II motors play several important roles in a variety of cellular processes, some of which involve active assembly/disassembly of cytoskeletal substructures. Myosin II motors have been shown to function in actin bundle turnover in neuronal growth cones and in the recycling of actin filaments during cytokinesis. Close examination had shown an intimate relationship between myosin II motor adenosine triphosphatase activity and actin turnover rate. However, the direct implication of myosin II in actin turnover is still not understood. Herein, we show, using high-resolution cryo-transmission electron microscopy, that myosin II motors control the turnover of actin bundles in a concentration-dependent manner in vitro. We demonstrate that disassembly of actin bundles occurs through two main stages: the first stage involves unbundling into individual filaments, and the second involves their subsequent depolymerization. These evidence suggest that, in addition to their &#34;classical&#34; contractile abilities, myosin II motors may be directly implicated in active actin depolymerization. We believe that myosin II motors may function similarly in vivo (e.g., in the disassembly of the contractile ring by fine tuning the local concentration/activity of myosin II motors).</description>
    <dc:title>A Cytoskeletal Demolition Worker: Myosin II Acts as an Actin Depolymerization Agent</dc:title>

    <dc:creator>Lior Haviv</dc:creator>
    <dc:creator>David Gillo</dc:creator>
    <dc:creator>Frederic Backouche</dc:creator>
    <dc:creator>Anne Bernheim-Groswasser</dc:creator>
    <dc:identifier>doi:10.1016/j.jmb.2007.09.066</dc:identifier>
    <dc:source>Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 325-330.</dc:source>
    <dc:date>2008-04-17T10:54:05-00:00</dc:date>
    <prism:publicationYear>2008</prism:publicationYear>
    <prism:publicationName>Journal of Molecular Biology</prism:publicationName>
    <prism:volume>375</prism:volume>
    <prism:number>2</prism:number>
    <prism:startingPage>325</prism:startingPage>
    <prism:endingPage>330</prism:endingPage>
    <prism:category>actin</prism:category>
    <prism:category>experiment</prism:category>
    <prism:category>motor</prism:category>
    <prism:category>myosin</prism:category>
    <prism:category>polymerization</prism:category>
</item>



<item rdf:about="http://www.citeulike.org/user/cactus/article/1324508">
    <title>Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy</title>
    <link>http://www.citeulike.org/user/cactus/article/1324508</link>
    <description>&lt;i&gt;PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8827-8832.&lt;/i&gt;&lt;br /&gt;&lt;br /&gt;We used fluorescence microscopy to determine how polymerization of Mg-ADP-actin depends on the concentration of phosphate. From the dependence of the elongation rate on the actin concentration and direct observations of depolymerizing filaments, we measured the polymerization rate constants of ADP-actin and ADP-Pi-actin. Saturating phosphate reduces the critical concentration for polymerization of Mg-ADP-actin from 1.8 to 0.06 microM almost entirely by reducing the dissociation rate constants at both ends. Saturating phosphate increases the barbed end association rate constant of Mg-ADP-actin 15%, but this value is still threefold less than that of ATP-actin. Thus, ATP hydrolysis without phosphate dissociation must change the conformation of polymerized actin. Analysis of depolymerization experiments in the presence of phosphate suggests that phosphate dissociation near the terminal subunits is much faster than in the interior. Remarkably, 10 times more phosphate is required to slow the depolymerization of the pointed end than the barbed end, suggesting a weak affinity of phosphate near the pointed end. Our observations of single actin filaments provide clues about the origins of the difference in the critical concentration at the two ends of actin filaments in the presence of ATP. 10.1073/pnas.0702510104</description>
    <dc:title>Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy</dc:title>

    <dc:creator>Ikuko Fujiwara</dc:creator>
    <dc:creator>Dimitrios Vavylonis</dc:creator>
    <dc:creator>Thomas Pollard</dc:creator>
    <dc:identifier>doi:10.1073/pnas.0702510104</dc:identifier>
    <dc:source>PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8827-8832.</dc:source>
    <dc:date>2007-05-24T07:36:02-00:00</dc:date>
    <prism:publicationYear>2007</prism:publicationYear>
    <prism:publicationName>PNAS</prism:publicationName>
    <prism:volume>104</prism:volume>
    <prism:number>21</prism:number>
    <prism:startingPage>8827</prism:startingPage>
    <prism:endingPage>8832</prism:endingPage>
    <prism:category>actin</prism:category>
    <prism:category>experiment</prism:category>
    <prism:category>polymerization</prism:category>
    <prism:category>protein</prism:category>
</item>



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