natstreet profile

Recent Activity

• 15:41: posted Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids.
• 14:26: posted The choice of genetic material for mechanistic studies of adaptation in forest trees.
• 12:28: posted Big data: The future of biocuration
• 08:53: posted Genotypic variation in tolerance to elevated ozone in rice: dissection of distinct genetic factors linked to tolerance mechanisms

• 10:05: posted Eleven Golden Rules of Quantitative RT-PCR
• 10:04: posted OrthoMCL: identification of ortholog groups for eukaryotic genomes.
• 10:04: posted Effects of transgenic hybrid aspen overexpressing polyphenol oxidase on rhizosphere diversity.
• 10:04: posted Ozone-induced changes in photosynthesis and photorespiration of hybrid poplar in relation to the developmental stage of the leaves.

• 16:42: posted The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.
• 16:42: posted Employing conservation of co-expression to improve functional inference
• 16:35: posted Classifying transcription factor targets and discovering relevant biological features
• 16:34: posted A nitty-grritty aspect of correlation and network inference from gene expression data
• 16:28: posted Regulon organization of Arabidopsis

• 12:03: posted OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
• 10:46: posted Mapping and sequencing complex genomes: let's get physical!
• 09:46: posted Diversity Arrays Technology (DArT) for Pan-Genomic Evolutionary Studies of Non-Model Organisms
• 09:38: posted Comparative sequence analysis between orthologous regions of the Arabidopsis and Populus genomes reveals substantial synteny and microcollinearity

• 15:22: posted Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
• 15:21: posted SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
• 13:35: posted Perturbed lignification impacts tree growth in hybrid poplar - a function of sink strength, vascular integrity and photosynthetic assimilation.
• 13:35: posted Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR.
• 13:35: posted Statistical Significance of quantitative PCR
• 13:34: posted Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
• 13:33: posted Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
• 13:33: posted RReportGenerator : Automatic reports from routine statistical analysis using R
• 13:32: posted Inference of selection from multiple species alignments.
• 13:32: posted Sequencing of natural strains of Arabidopsis thaliana with short reads
• 13:32: posted Analysis of Phylogenetics and Evolution with R (Use R)
• 13:31: posted Ecological Models and Data in R

• 12:52: posted qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.

• 13:14: posted NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.
• 13:14: posted Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level
• 13:14: posted BOV - a web-based BLAST output visualization tool

• 11:02: posted Bias and Sampling Error of the Estimated Proportion of Genotypic Variance Explained by Quantitative Trait Loci Determined From Experimental Data in Maize Using Cross Validation and Validation With Independent Samples

• 09:08: posted Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3'UTR Evolution.

• 11:44: posted Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants
• 11:38: posted The Generation Challenge Programme comparative plant stress-responsive gene catalogue.

• 15:20: posted Nature's Swiss Army Knife: The Diverse Protective Roles of Anthocyanins in Leaves.
• 14:55: posted Effect of ABA upon anthocyanin synthesis in regenerated torenia shoots.
• 14:52: posted ABA and sugar effects on anthocyanin formation in grape berry cultured in vitro
• 11:28: posted Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
• 11:27: posted A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition

• 16:44: posted The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere
• 16:44: posted Green genes-comparative genomics of the green branch of life.
• 16:43: posted Standards for systems biology
• 16:42: posted Network inference, analysis, and modeling in systems biology.
• 16:35: posted Preferential regulation of duplicated genes by microRNAs in mammals
• 16:35: posted Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
• 16:34: posted Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana
• 16:34: posted MotifCluster: An interactive online tool for clustering and visualizing sequences using shared motifs
• 16:33: posted Natural variation in DNA methylation in ribosomal RNA genes of Arabidopsis thaliana
• 16:33: posted Comparative analysis of function and interaction of transcription factors in nematodes: Extensive conservation of orthology coupled to rapid sequence evolution

• 11:25: posted Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana
• 11:15: posted MAX1, a regulator of the flavonoid pathway, controls vegetative axillary bud outgrowth in Arabidopsis.
• 11:09: posted The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana

• 12:47: posted Ecological Genomics of Plant-Insect Interactions: From Gene to Community

• 12:58: posted Ultradeep Bisulfite Sequencing Analysis of DNA Methylation Patterns in Multiple Gene Promoters by 454 Sequencing
• 11:42: posted Proteome Profiling of Populus euphratica Oliv. Upon Heat Stress
• 10:11: posted Regeneration of the secondary vascular system in poplar as a novel system to investigate gene expression by a proteomic approach
• 10:07: posted Responses of poplar to chilling temperatures: proteomic and physiological aspects.
• 08:48: posted Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis
• 08:22: posted Genomic regions involved in productivity of two interspecific poplar families in Europe. 1. Stem height, circumference and volume

• 13:55: posted Genetic structure of a foundation species: scaling community phenotypes from the individual to the region
• 13:43: posted Priming defense genes and metabolites in hybrid poplar by the green leaf volatile <i>cis</i>-3-hexenyl acetate
• 09:42: posted Expressed sequence tags from poplar wood tissues--a comparative analysis from multiple libraries.
• 08:59: posted Gene Expression and Protein Length Influence Codon Usage and Rates of Sequence Evolution in Populus tremula

• 13:50: posted Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana.
• 10:56: posted Conservation and divergence of plant microRNA genes
• 10:23: posted High-Resolution Mapping of Gene Expression Using Association in an Outbred Mouse Stock
• 10:21: posted Identification and Functional Analysis of Light-Responsive Unique Genes and Gene Family Members in Rice
• 10:04: posted Planting the seeds of a new paradigm.
• 09:11: posted A genomic code for nucleosome positioning
• 08:39: posted Dynamic Regulation of Nucleosome Positioning in the Human Genome