jjray profile

Recent Activity

• 21:24: posted Positive Receptor Feedback during Lineage Commitment Can Generate Ultrasensitivity to Ligand and Confer Robustness to a Bistable Switch

• 16:26: posted Entropy, Large Deviations, and Statistical Mechanics (Classics in Mathematics)
• 16:26: posted Large Deviations (Fields Institute Monographs, 14)
• 16:13: posted Asymptotic probabilities and differential equations

• 23:02: posted Are DNA Transcription Factor Proteins Maxwellian Demons?
• 22:58: posted Lipid Localization in Bacterial Cells through Curvature-Mediated Microphase Separation
• 22:57: posted Estimation of the Source-by-Source Effect of Autorepression on Genetic Noise
• 17:29: posted Dynamics of Genome Rearrangement in Bacterial Populations

• 21:49: posted Thermodynamics of natural selection III: Landauer's principle in computation and chemistry
• 21:49: posted Thermodynamics of natural selection II: Chemical Carnot cycles
• 21:48: posted Thermodynamics of natural selection I: Energy flow and the limits on organization

• 21:32: posted Positive feedback of G1 cyclins ensures coherent cell cycle entry
• 16:39: posted Parasites lead to evolution of robustness against gene loss in host signaling networks
• 16:36: posted Stochastic Processes in Physics and Chemistry, Third Edition (North-Holland Personal Library)
• 16:32: posted Applied Numerical Methods with MATLAB for Engineers and Scientists
• 16:31: posted An Introduction to Systems Biology: Design Principles of Biological Circuits (Chapman & Hall/Crc Mathematical and Computational Biology Series)
• 16:30: posted Chemical Biophysics: Quantitative Analysis of Cellular Systems (Cambridge Texts in Biomedical Engineering)
• 16:27: posted Noise generation, amplification and propagation in chemotactic signaling systems of living cells
• 16:25: posted Thermal fluctuations biased for directional motion in molecular motors

• 16:35: posted Energetics of the protein-DNA-water interaction
• 15:49: posted Effect of reactant size on discrete stochastic chemical kinetics.

• 17:25: posted A fluctuation method to quantify in vivo fluorescence data.
• 17:22: posted Stochastic protein expression in individual cells at the single molecule level
• 17:20: posted The Generation of Promoter-Mediated Transcriptional Noise in Bacteria
• 17:19: posted A synthetic oscillatory network of transcriptional regulators.
• 17:17: posted Regulation of noise in the expression of a single gene.

• 19:31: posted Autoamplification of a two-component regulatory system results in "learning" behavior.
• 19:30: posted Making informed decisions: regulatory interactions between two-component systems.

• 19:59: posted Probing the limits to positional information.

• 20:22: posted Canalization of Development and the Inheritance of Acquired Characters
• 17:44: posted Generalized Flows, Intrinsic Stochasticity, and Turbulent Transport
• 17:40: posted Non-equilibrium statistical mechanics of Minority Games
• 17:33: posted Matrix Revolutions, The Origin of Quantum Variables
• 17:29: posted Geometric Foundation of Thermo-Statistics, Phase Transitions, Second Law of Thermodynamics, but without Thermodynamic Limit
• 17:20: posted Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks.
• 17:18: posted Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
• 17:13: posted Functional organisation of Escherichia coli transcriptional regulatory network

• 21:13: posted Nonequilibrium generation of information in copolymerization processes.
• 21:00: posted Defining diversity, specialization, and gene specificity in transcriptomes through information theory.
• 18:23: posted A Bacterial Cell-Cycle Regulatory Network Operating in Time and Space

• 12:55: posted How regulatory T cells work

• 18:09: posted Noise in genetic and neural networks.
• 18:08: posted Intrinsic and extrinsic contributions to stochasticity in gene expression.
• 18:08: posted Stochastic gene expression in a single cell.
• 18:07: posted Intrinsic noise in gene regulatory networks.
• 00:06: posted Shaping robust system through evolution

• 23:59: posted A method of estimating the noise level in a chaotic time series
• 23:55: posted Universal occurrence of the phase-flip bifurcation in time-delay coupled systems
• 23:49: posted Input reconstruction of chaos sensors
• 23:20: posted Comparative analyses of bidirectional promoters in vertebrates.
• 16:19: posted The mean and noise of stochastic gene transcription
• 16:13: posted Stochastic coherence in an oscillatory gene circuit model
• 16:11: posted Systematic adiabatic elimination for stochastic processes

• 17:19: posted Reversal of learning deficits in a Tsc2(+/-) mouse model of tuberous sclerosis.
• 17:18: posted Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity

• 18:12: posted The effect of negative feedback loops on the dynamics of Boolean networks
• 17:30: posted Uses and abuses of mathematics in biology.

• 15:27: posted Efficient attenuation of stochasticity in gene expression through post-transcriptional control.
• 15:24: posted Engineering stochasticity in gene expression.