iris_2001 profile

About me

Username:	iris_2001
Name:	Not specified
Job title:	Not specified
Affiliation:	Not specified
Web page:	Not specified
Joined:	2007-02-15

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Recent Activity

2009-01-04

10:36: posted Automated knowledge extraction for decision model construction: a data mining approach
10:36: posted Dynamic pattern evolution on scale-free networks
10:36: posted Neural network classifiers and gene selection methods for microarray data on human lung adenocarcinoma
10:36: posted Predicting co-complexed protein pairs using genomic and proteomic data integration
10:36: added a note to Predicting co-complexed protein pairs using genomic and proteomic data integration
10:36: posted Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
10:36: added a note to Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
10:36: posted Redundancy based feature selection for microarray data
10:36: posted Feature selection for high-dimensional data: A fast correlation-based filter solution
10:36: posted Computational Approaches for Predicting Protein---Protein Interactions: A Survey
10:36: added a note to Computational Approaches for Predicting Protein---Protein Interactions: A Survey
10:36: posted Functional and topological characterization of protein interaction networks
10:36: added a note to Functional and topological characterization of protein interaction networks
10:36: posted Gene network interconnectedness and the generalized topological overlap measure
10:36: added a note to Gene network interconnectedness and the generalized topological overlap measure
10:36: posted Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction
10:36: added a note to Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction
10:36: posted Constructing free-energy approximations and generalized belief propagation algorithms
10:36: posted Physical network models
10:36: added a note to Physical network models
10:36: posted A Comparative Study on Feature Selection in Text Categorization
10:36: posted Supervised enzyme network inference from the integration of genomic data and chemical information
10:36: added a note to Supervised enzyme network inference from the integration of genomic data and chemical information
10:36: posted Protein network inference from multiple genomic data: a supervised approach
10:36: added a note to Protein network inference from multiple genomic data: a supervised approach
10:36: posted Discovering disease genes by topological features in human protein-protein interaction network
10:36: added a note to Discovering disease genes by topological features in human protein-protein interaction network
10:36: posted Biomarker identification by feature wrappers
10:36: added a note to Biomarker identification by feature wrappers
10:36: posted Topology and weights in a protein domain interaction network--a novel way to predict protein interactions
10:36: added a note to Topology and weights in a protein domain interaction network--a novel way to predict protein interactions
10:36: posted Evolution and Topology in the Yeast Protein Interaction Network
10:36: posted Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations
10:36: added a note to Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations
10:36: posted Prediction of functional modules based on comparative genome analysis and Gene Ontology application
10:36: added a note to Prediction of functional modules based on comparative genome analysis and Gene Ontology application
10:36: posted KBA: Kernel Boundary Alignment Considering Imbalanced Data Distribution
10:36: posted Class-Boundary Alignment for Imbalanced Dataset Learning
10:36: posted Finding Communities in Linear Time: A Physics Approach
10:36: posted An Efficient Approach to Detect a Protein Community from a Seed
10:36: posted Organelle DB: an updated resource of eukaryotic protein localization and function
10:36: added a note to Organelle DB: an updated resource of eukaryotic protein localization and function
10:36: posted Organelle DB: a cross-species database of protein localization and function
10:36: added a note to Organelle DB: a cross-species database of protein localization and function
10:36: posted Scaling the Kernel Function to Improve Performance of the Support Vector Machine
10:36: posted A method for finding communities of related genes
10:36: added a note to A method for finding communities of related genes
10:36: posted A Markov Random Field Model for Network-based Analysis of Genomic Data
10:36: added a note to A Markov Random Field Model for Network-based Analysis of Genomic Data
10:36: posted A system for quantifying dynamic protein interactions defines a role for Herceptin in modulating ErbB2 interactions
10:36: posted Collective dynamics of 'small-world' networks
10:36: added a note to Collective dynamics of 'small-world' networks
10:36: posted Data merging for integrated microarray and proteomic analysis
10:36: posted Logit models and logistic regressions for social networks: I. An introduction to Markov graphs andp
10:36: posted A New Method to Measure the Semantic Similarity of GO Terms
10:36: added a note to A New Method to Measure the Semantic Similarity of GO Terms
10:36: posted A protein interaction network for pluripotency of embryonic stem cells
10:36: added a note to A protein interaction network for pluripotency of embryonic stem cells
10:36: posted Local Probabilistic Models for Link Prediction
10:36: posted How the global structure of protein interaction networks evolves
10:36: added a note to How the global structure of protein interaction networks evolves
10:36: posted Comparative assessment of large-scale data sets of protein-protein interactions
10:36: added a note to Comparative assessment of large-scale data sets of protein-protein interactions
10:36: posted STRING: known and predicted protein-protein associations, integrated and transferred across organisms
10:36: added a note to STRING: known and predicted protein-protein associations, integrated and transferred across organisms
10:36: posted Efficient Graph-Based Energy Minimization Methods in Computer Vision
10:36: posted Global protein function prediction from protein-protein interaction networks
10:36: added a note to Global protein function prediction from protein-protein interaction networks
10:36: posted Modeling of protein interaction networks
10:36: posted The topological relationship between the large-scale attributes and local interaction patterns of complex networks
10:36: added a note to The topological relationship between the large-scale attributes and local interaction patterns of complex networks
10:36: posted Statistical Learning Theory.
10:36: posted Information Retrieval
10:36: posted Safety and efficacy of imatinib (STI571) in metastatic gastrointestinal stromal tumours: a phase I study
10:36: added a note to Safety and efficacy of imatinib (STI571) in metastatic gastrointestinal stromal tumours: a phase I study
10:36: posted A new web-based data mining tool for the identification of candidate genes for human genetic disorders
10:36: added a note to A new web-based data mining tool for the identification of candidate genes for human genetic disorders
10:36: posted Yeast Protein Interactome topology provides framework for coordinated-functionality
10:36: posted A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
10:36: added a note to A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
10:36: posted From protein networks to biological systems
10:36: added a note to From protein networks to biological systems
10:36: posted Learning kernels from biological networks by maximizing entropy
10:36: added a note to Learning kernels from biological networks by maximizing entropy
10:36: posted Systematic genetic analysis with ordered arrays of yeast deletion mutants
10:36: added a note to Systematic genetic analysis with ordered arrays of yeast deletion mutants
10:36: posted Automatic extraction of protein interactions from scientific abstracts
10:36: added a note to Automatic extraction of protein interactions from scientific abstracts
10:36: posted One-class classification: concept-learning in the absence of counter-examples
10:36: posted Support Vector Data Description
10:36: posted Link prediction in relational data
10:36: posted Discriminative Probabilistic Models for Relational Data
10:36: posted Network topology generators: degree-based vs. structural
10:36: posted Tagging gene and protein names in biomedical text
10:36: added a note to Tagging gene and protein names in biomedical text
10:36: posted Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection
10:36: added a note to Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection
10:36: posted A direct comparison of protein interaction confidence assignment schemes
10:36: added a note to A direct comparison of protein interaction confidence assignment schemes
10:36: posted InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
10:36: added a note to InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
10:36: posted From the Cover: Subnets of scale-free networks are not scale-free: Sampling properties of networks
10:36: posted Subnets of scale-free networks are not scale-free: sampling properties of networks
10:36: added a note to Subnets of scale-free networks are not scale-free: sampling properties of networks
10:36: posted Automated modelling of signal transduction networks
10:36: added a note to Automated modelling of signal transduction networks
10:36: posted Predicting the sub-cellular location of proteins from text using support vector machines
10:36: added a note to Predicting the sub-cellular location of proteins from text using support vector machines
10:36: posted Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts
10:36: added a note to Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts
10:36: posted Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
10:36: added a note to Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
10:36: posted Physical protein-protein interactions predicted from microarrays
10:36: posted Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction
10:36: posted Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
10:36: added a note to Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
10:36: posted Deciphering protein-protein interactions. Part I. Experimental techniques and databases
10:36: added a note to Deciphering protein-protein interactions. Part I. Experimental techniques and databases
10:36: posted Graph sharpening plus graph integration: a synergy that improves protein functional classification
10:36: added a note to Graph sharpening plus graph integration: a synergy that improves protein functional classification
10:36: posted Network motifs in the transcriptional regulation network of Escherichia coli
10:36: posted 'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
10:36: added a note to 'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
10:36: posted Kernel Methods for pattern analysis
10:36: posted Performance standards and evaluations in IR test collections: Cluster-based retrieval models.
10:36: posted Mining the biomedical literature in the genomic era: an overview
10:36: added a note to Mining the biomedical literature in the genomic era: an overview
10:36: posted Genes, themes and microarrays: using information retrieval for large-scale gene analysis
10:36: added a note to Genes, themes and microarrays: using information retrieval for large-scale gene analysis
10:36: posted Network-based prediction of protein function
10:36: posted From the Cover: Conserved patterns of protein interaction in multiple species
10:36: added a note to From the Cover: Conserved patterns of protein interaction in multiple species
10:36: posted Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
10:36: posted Collective Classification in Network Data
10:36: posted Link-based Classification
10:36: posted Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts
10:36: added a note to Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts
10:36: posted Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
10:36: added a note to Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
10:36: posted Discovering molecular pathways from protein interaction and gene expression data
10:36: added a note to Discovering molecular pathways from protein interaction and gene expression data
10:36: posted Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
10:36: added a note to Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
10:36: posted A module map showing conditional activity of expression modules in cancer
10:36: added a note to A module map showing conditional activity of expression modules in cancer
10:36: posted Efficient algorithms for detecting signaling pathways in protein interaction networks
10:36: added a note to Efficient algorithms for detecting signaling pathways in protein interaction networks
10:36: posted Local modeling of global interactome networks
10:36: added a note to Local modeling of global interactome networks
10:36: posted A new measure for functional similarity of gene products based on Gene Ontology
10:36: added a note to A new measure for functional similarity of gene products based on Gene Ontology
10:36: posted Quantitative monitoring of gene expression patterns with a complementary DNA microarray
10:36: added a note to Quantitative monitoring of gene expression patterns with a complementary DNA microarray
10:36: posted Exploring Biological Network Structure Using Exponential Random Graph Models
10:36: added a note to Exploring Biological Network Structure Using Exponential Random Graph Models
10:36: posted Negation of protein protein interactions: analysis and extraction
10:36: posted Construction of reliable protein-protein interaction networks with a new interaction generality measure
10:36: added a note to Construction of reliable protein-protein interaction networks with a new interaction generality measure
10:36: posted Interaction generality, a measurement to assess the reliability of a protein-protein interaction
10:36: posted Global network analysis of phenotypic effects: Protein networks and toxicity modulation in Saccharomyces cerevisiae
10:36: posted Systematic variation in gene expression patterns in human cancer cell lines
10:36: added a note to Systematic variation in gene expression patterns in human cancer cell lines
10:36: posted Theoretical and emiprical analysis of Relief and ReliefF
10:36: posted EDGAR: extraction of drugs, genes and relations from the biomedical literature
10:36: added a note to EDGAR: extraction of drugs, genes and relations from the biomedical literature
10:36: posted Extracting molecular binding relationships from biomedical text
10:36: posted Inferring protein domain interactions from databases of interacting proteins
10:36: added a note to Inferring protein domain interactions from databases of interacting proteins
10:36: posted A generic protein purification method for protein complex characterization and proteome exploration
10:36: added a note to A generic protein purification method for protein complex characterization and proteome exploration
10:36: posted Markov logic networks
10:36: added a note to Markov logic networks
10:36: posted Probabilistic model of the human protein-protein interaction network
10:36: added a note to Probabilistic model of the human protein-protein interaction network
10:36: posted High-throughput functional annotation of novel gene products using document clustering
10:36: added a note to High-throughput functional annotation of novel gene products using document clustering
10:36: posted Predicting protein-peptide interactions via a network-based motif sampler
10:36: added a note to Predicting protein-peptide interactions via a network-based motif sampler
10:36: posted Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
10:36: added a note to Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
10:36: posted Principal components analysis to summarize microarray experiments: application to sporulation time series
10:36: added a note to Principal components analysis to summarize microarray experiments: application to sporulation time series
10:36: posted Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
10:36: added a note to Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
10:36: posted Representing sentence structure in hidden Markov models for information extraction.
10:36: posted Hierarchical Organization of Modularity in Metabolic Networks
10:36: posted A simple introduction to maximum entropy models for natural language processing
10:36: posted Inferring pathways from gene lists using a literature-derived network of biological relationships
10:36: added a note to Inferring pathways from gene lists using a literature-derived network of biological relationships
10:36: posted Defining and identifying communities in networks
10:36: added a note to Defining and identifying communities in networks
10:36: posted Computational analysis of microarray data
10:36: added a note to Computational analysis of microarray data
10:36: posted A mixture of feature experts approach for protein-protein interaction prediction
10:36: added a note to A mixture of feature experts approach for protein-protein interaction prediction
10:36: posted Random forest similarity for protein-protein interaction prediction from multiple sources
10:36: added a note to Random forest similarity for protein-protein interaction prediction from multiple sources
10:36: posted A mixture of feature experts approach for protein-protein interaction prediction
10:36: posted Evaluation of different biological data and computational classification methods for use in protein interaction prediction
10:36: posted Functional topology in a network of protein interactions
10:36: added a note to Functional topology in a network of protein interactions
10:36: posted Modelling protein-protein interaction networks via a stickiness index
10:36: added a note to Modelling protein-protein interaction networks via a stickiness index
10:36: posted Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction
10:36: added a note to Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction
10:36: posted Statistical Relational Learning for Link Prediction
10:36: posted Gene networks inference using dynamic Bayesian networks
10:36: added a note to Gene networks inference using dynamic Bayesian networks
10:36: posted Computing fuzzy associations for the analysis of biological literature
10:36: added a note to Computing fuzzy associations for the analysis of biological literature
10:36: posted Association of genes to genetically inherited diseases using data mining
10:36: added a note to Association of genes to genetically inherited diseases using data mining
10:36: posted An Exponential Core in the Heart of the Yeast Protein Interaction Network
10:36: posted A Topological Measurement for Weighted Protein Interaction Network
10:36: added a note to A Topological Measurement for Weighted Protein Interaction Network
10:36: posted A Topological Measurement for Weighted Protein Interaction Network
10:36: posted Phase II study of receptor-enhanced chemosensitivity using recombinant humanized anti-p185HER2/neu monoclonal antibody plus cisplatin in patients with HER2/neu-overexpressing metastatic breast cancer refractory to chemotherapy treatment
10:36: added a note to Phase II study of receptor-enhanced chemosensitivity using recombinant humanized anti-p185HER2/neu monoclonal antibody plus cisplatin in patients with HER2/neu-overexpressing metastatic breast cancer refractory to chemotherapy treatment
10:36: posted Minreg: inferring an active regulator set
10:36: added a note to Minreg: inferring an active regulator set
10:36: posted Inferring subnetworks from perturbed expression profiles
10:36: added a note to Inferring subnetworks from perturbed expression profiles
10:36: posted Probabilistic reasoning in intelligent systems
10:36: posted Learning gene functional classifications from multiple data types
10:36: added a note to Learning gene functional classifications from multiple data types
10:36: posted Filtering high-throughput protein-protein interaction data using a combination of genomic features
10:36: added a note to Filtering high-throughput protein-protein interaction data using a combination of genomic features
10:36: posted Conservation of protein interaction network in evolution
10:36: added a note to Conservation of protein interaction network in evolution
10:36: posted Reconstruction of cellular signalling networks and analysis of their properties
10:36: added a note to Reconstruction of cellular signalling networks and analysis of their properties
10:36: posted Uncovering the overlapping community structure of complex networks in nature and society
10:36: posted Modelling regulatory pathways in E. coli from time series expression profiles
10:36: added a note to Modelling regulatory pathways in E. coli from time series expression profiles
10:36: posted Learning the Kernel with Hyperkernels
10:36: posted Prediction and ranking algorithms for event-based network data
10:36: added a note to Prediction and ranking algorithms for event-based network data
10:36: posted Notions of correctness when evaluating protein name taggers
10:36: posted Statistical analysis of domains in interacting protein pairs
10:36: added a note to Statistical analysis of domains in interacting protein pairs
10:36: posted Support vector machine applications in computational biology
10:36: posted Automatic term identification and classification in biology texts.
10:36: posted Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts
10:36: added a note to Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts
10:36: posted Mixing patterns and community structure in networks
10:36: posted Modularity and community structure in networks
10:36: posted From the Cover: Modularity and community structure in networks
10:36: posted The Structure and Function of Complex Networks
10:36: posted Mixing patterns in networks
10:36: added a note to Mixing patterns in networks
10:36: posted A measure of betweenness centrality based on random walks
10:36: posted Assortative Mixing in Networks
10:36: added a note to Assortative Mixing in Networks
10:36: posted Finding and evaluating community structure in networks
10:36: added a note to Finding and evaluating community structure in networks
10:36: posted Detecting community structure in networks
10:36: added a note to Detecting community structure in networks
10:36: posted Analysis of weighted networks
10:36: added a note to Analysis of weighted networks
10:36: posted Leveraging relational autocorrelation with latent group models
10:36: posted Supporting Relational Knowledge Discovery: Lessons in Architecture and Algorithm Design
10:36: posted Iterative classification in relational data
10:36: posted Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
10:36: added a note to Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
10:36: posted Context-sensitive data integration and prediction of biological networks
10:36: posted Causality and pathway search in microarray time series experiment
10:36: posted Network Synchronization, Diffusion, and the Paradox of Heterogeneity
10:36: posted A lock-and-key model for protein-protein interactions
10:36: posted Denoising and untangling graphs using degree priors
10:36: posted Architecture of basic building blocks in protein and domain structural interaction networks
10:36: added a note to Architecture of basic building blocks in protein and domain structural interaction networks
10:36: posted Machine Learning
10:36: posted Gene indexing: characterization and analysis of NLM's GeneRIFs
10:36: added a note to Gene indexing: characterization and analysis of NLM's GeneRIFs
10:36: posted Network motifs: simple building blocks of complex networks
10:36: added a note to Network motifs: simple building blocks of complex networks
10:36: posted Inferring network mechanisms: the Drosophila melanogaster protein interaction network
10:36: added a note to Inferring network mechanisms: the Drosophila melanogaster protein interaction network
10:36: posted From The Cover: Inferring network mechanisms: The Drosophila melanogaster protein interaction network
10:36: posted Cautious Inference in Collective Classification
10:36: posted Graph Theory and Networks in Biology
10:36: posted Specificity and Stability in Topology of Protein Networks
10:36: posted Mining literature for protein-protein interactions
10:36: added a note to Mining literature for protein-protein interactions
10:36: posted Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
10:36: posted Growing functional modules from a seed protein via integration of protein interaction and gene expression data
10:36: added a note to Growing functional modules from a seed protein via integration of protein interaction and gene expression data
10:36: posted Analysis of proteins and proteomes by mass spectrometry
10:36: added a note to Analysis of proteins and proteomes by mass spectrometry
10:36: posted One-class svms for document classification
10:36: added a note to One-class svms for document classification
10:36: posted Mining new protein-protein interactions
10:36: posted Essential latent knowledge for protein-protein interactions: analysis by an unsupervised learning approach
10:36: posted False positive reduction in protein-protein interaction predictions using gene ontology annotations
10:36: added a note to False positive reduction in protein-protein interaction predictions using gene ontology annotations
10:36: posted Classification in Networked Data: A Toolkit and a Univariate Case Study
10:36: posted A Simple Relational Classifier
10:36: posted CGI: a new approach for prioritizing genes by Combining Gene expression and protein-protein Interaction data
10:36: posted Combining functional and topological properties to identify core modules in protein interaction networks
10:36: added a note to Combining functional and topological properties to identify core modules in protein interaction networks
10:36: posted Cancer classification using gene expression data
10:36: posted Link-based Classification
10:36: posted Assessing the limits of genomic data integration for predicting protein networks
10:36: added a note to Assessing the limits of genomic data integration for predicting protein networks
10:36: posted The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeast
10:36: posted Development of unified statistical potentials describing protein-protein interactions
10:36: added a note to Development of unified statistical potentials describing protein-protein interactions
10:36: posted Semantic similarity measures as tools for exploring the gene ontology
10:36: posted Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
10:36: posted Effect of training datasets on support vector machine prediction of protein-protein interactions
10:36: added a note to Effect of training datasets on support vector machine prediction of protein-protein interactions
10:36: posted Inferring protein-protein interactions through high-throughput interaction data from diverse organisms
10:36: added a note to Inferring protein-protein interactions through high-throughput interaction data from diverse organisms
10:36: posted Information assessment on predicting protein-protein interactions
10:36: added a note to Information assessment on predicting protein-protein interactions
10:36: posted Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization
10:36: added a note to Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization
10:36: posted The link-prediction problem for social networks
10:36: posted Weighted networks of scientific communication: the measurement and geometrical role of weight
10:36: posted Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications (Extended Version)
10:36: posted Network neighborhood analysis with the multi-node topological overlap measure
10:36: posted Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns
10:36: added a note to Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns
10:36: posted From the Cover: Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns
10:36: posted Predicting protein function from protein/protein interaction data: a probabilistic approach
10:36: added a note to Predicting protein function from protein/protein interaction data: a probabilistic approach
10:36: posted Finding relevant references to genes and proteins in Medline using a Bayesian approach
10:36: added a note to Finding relevant references to genes and proteins in Medline using a Bayesian approach
10:36: posted Transcriptional regulatory networks in Saccharomyces cerevisiae
10:36: added a note to Transcriptional regulatory networks in Saccharomyces cerevisiae
10:36: posted A probabilistic functional network of yeast genes
10:36: added a note to A probabilistic functional network of yeast genes
10:36: posted Diffusion Kernel-Based Logistic Regression Models for Protein Function Prediction
10:36: posted An integrated approach to the prediction of domain-domain interactions
10:36: posted Assessing and Combining Reliability of Protein Interaction Sources
10:36: posted A statistical framework for genomic data fusion
10:36: posted Learning the Kernel Matrix with Semidefinite Programming
10:36: posted Kernel-based data fusion and its application to protein function prediction in yeast
10:36: added a note to Kernel-based data fusion and its application to protein function prediction in yeast
10:36: posted Statistical data mining's challenges in bioinformatics
10:36: posted Challenges in bioinformatics for statistical data miners.
10:36: posted Functional Evolution of the Yeast Protein Interaction Network
10:36: posted Two methods for improving performance of an HMM and their application for gene finding
10:36: posted Using BLAST for identifying gene and protein names in journal articles
10:36: added a note to Using BLAST for identifying gene and protein names in journal articles
10:36: posted Estimating attributes: Analysis and extensions of relief
10:36: posted Convergent Tree-Reweighted Message Passing for Energy Minimization
10:36: added a note to Convergent Tree-Reweighted Message Passing for Energy Minimization
10:36: posted Toward optimal feature selection.
10:36: posted Prediction of protein-protein interaction sites using support vector machines
10:36: added a note to Prediction of protein-protein interaction sites using support vector machines
10:36: posted Gene/protein/family name recognition in biomedical literature
10:36: posted Wrapper for feature subset selection
10:36: posted Topology of biological networks and reliability of information processing
10:36: posted Approximation Algorithms for Classification Problems with Pairwise Relationships: Metric Labeling and Markov Random Fields
10:36: posted Inferring gene networks from time series microarray data using dynamic Bayesian networks
10:36: added a note to Inferring gene networks from time series microarray data using dynamic Bayesian networks
10:36: posted Systematic interpretation of genetic interactions using protein networks
10:36: added a note to Systematic interpretation of genetic interactions using protein networks
10:36: posted Bayesian Classification of DNA Array Expression Data
10:36: posted Factor Graphs and the Sum-Product Algorithm
10:36: posted A new status index derived from sociometric analysis
10:36: posted Selective integration of multiple biological data for supervised network inference
10:36: posted Topological Generalizations of network motifs
10:36: posted Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
10:36: added a note to Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
10:36: posted Whole-genome annotation by using evidence integration in functional-linkage networks
10:36: added a note to Whole-genome annotation by using evidence integration in functional-linkage networks
10:36: posted On the extensions of kernel alignment,
10:36: posted High-betweenness proteins in the yeast protein interaction network
10:36: added a note to High-betweenness proteins in the yeast protein interaction network
10:36: posted Co-evolutionary Analysis of Domains in Interacting Proteins Reveals Insights into Domain-Domain Interactions Mediating Protein-Protein Interactions
10:36: posted Learning in Graphical Models.
10:36: posted Global topological features of cancer proteins in the human interactome
10:36: posted Principles of protein-protein interactions
10:36: added a note to Principles of protein-protein interactions
10:36: posted Irrelevant feature and the subset selection problem.
10:36: posted Text Categorization with Support Vector Machines: Learning with Many Relevant Features.
10:36: posted A Support Vector Method for Multivariate Performance Measures
10:36: posted Transductive Learning via Spectral Graph Partitioning
10:36: posted Network motif identification in stochastic networks
10:36: posted Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy
10:36: posted Lethality and centrality in protein networks
10:36: posted A literature network of human genes for high-throughput analysis of gene expression
10:36: added a note to A literature network of human genes for high-throughput analysis of gene expression
10:36: posted Why collective inference improves relational classification
10:36: posted A Bayesian networks approach for predicting protein-protein interactions from genomic data
10:36: added a note to A Bayesian networks approach for predicting protein-protein interactions from genomic data
10:36: posted Relating whole-genome expression data with protein-protein interactions
10:36: added a note to Relating whole-genome expression data with protein-protein interactions
10:36: posted Towards an integrated protein-protein interaction network: a relational markov network approach
10:36: added a note to Towards an integrated protein-protein interaction network: a relational markov network approach
10:36: posted Improved gene selection for classification of microarrays
10:36: added a note to Improved gene selection for classification of microarrays
10:36: posted Subgraphs and network motifs in geometric networks
10:36: added a note to Subgraphs and network motifs in geometric networks
10:36: posted A comprehensive two-hybrid analysis to explore the yeast protein interactome
10:36: added a note to A comprehensive two-hybrid analysis to explore the yeast protein interactome
10:36: posted Message-Passing Algorithms for the Prediction of Protein Domain Interactions from Protein-Protein Interaction Data
10:36: posted Probabilistic inference of molecular networks from noisy data sources
10:36: posted Textquest: document clustering of Medline abstracts for concept discovery in molecular biology
10:36: added a note to Textquest: document clustering of Medline abstracts for concept discovery in molecular biology
10:36: posted Revealing modular organization in the yeast transcriptional network
10:36: added a note to Revealing modular organization in the yeast transcriptional network
10:36: posted Discovering regulatory and signalling circuits in molecular interaction networks
10:36: added a note to Discovering regulatory and signalling circuits in molecular interaction networks
10:36: posted Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures
10:36: added a note to Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures
10:36: posted Global analysis of protein localization in budding yeast
10:36: added a note to Global analysis of protein localization in budding yeast
10:36: posted Functional discovery via a compendium of expression profiles
10:36: added a note to Functional discovery via a compendium of expression profiles
10:36: posted Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection
10:36: added a note to Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection
10:36: posted Link Prediction Based on Graph Topology: The Predictive Value of the Generalized Clustering Coefficient
10:36: posted Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online)
10:36: added a note to Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online)
10:36: posted Using literature-based discovery to identify disease candidate genes
10:36: added a note to Using literature-based discovery to identify disease candidate genes
10:36: posted SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver
10:36: added a note to SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver
10:36: posted Very simple classification rules perform well on most commonly used datasets.
10:36: posted Subnetwork hierarchies of biochemical pathways
10:36: posted Unsupervised Learning by Probabilistic Latent Semantic Analysis
10:36: added a note to Unsupervised Learning by Probabilistic Latent Semantic Analysis
10:36: posted Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
10:36: added a note to Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
10:36: posted Identification of conserved protein complexes based on a model of protein network evolution
10:36: added a note to Identification of conserved protein complexes based on a model of protein network evolution
10:36: posted On the Complexity of Learning the Kernel Matrix
10:36: posted Untangling text data mining.
10:36: posted Disambiguating proteins, genes, and RNA in text: a machine learning approach
10:36: added a note to Disambiguating proteins, genes, and RNA in text: a machine learning approach
10:36: posted Monte Carlo sampling methods using Markov chains and their applications
10:36: posted Combining location and expression data for principled discovery of genetic regulatory network models
10:36: added a note to Combining location and expression data for principled discovery of genetic regulatory network models
10:36: posted Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
10:36: added a note to Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
10:36: posted Improving classification of microarray data using prototype-based feature selection
10:36: posted Effect of sampling on topology predictions of protein-protein interaction networks
10:36: added a note to Effect of sampling on topology predictions of protein-protein interaction networks
10:36: posted Evidence for dynamically organized modularity in the yeast protein-protein interaction network
10:36: posted Correlation-based Feature Subset Selection for Machine Learning.
10:36: posted An introduction to variable and feature selection
10:36: posted CYGD: the Comprehensive Yeast Genome Database
10:36: added a note to CYGD: the Comprehensive Yeast Genome Database
10:36: posted Learning to predict protein-protein interactions from protein sequences
10:36: added a note to Learning to predict protein-protein interactions from protein sequences
10:36: posted Probabilistic prediction of unknown metabolic and signal-transduction networks
10:36: added a note to Probabilistic prediction of unknown metabolic and signal-transduction networks
10:36: posted Towards the prediction of complete protein--protein interaction networks
10:36: posted Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
10:36: added a note to Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
10:36: posted Assessing experimentally derived interactions in a small world
10:36: added a note to Assessing experimentally derived interactions in a small world
10:36: posted Community structure in social and biological networks
10:36: posted A statistical framework for combining and interpreting proteomic datasets
10:36: added a note to A statistical framework for combining and interpreting proteomic datasets
10:36: posted Inferring Web communities from link topology
10:36: posted Global analysis of protein expression in yeast
10:36: added a note to Global analysis of protein expression in yeast
10:36: posted Learning probabilistic models of link structure
10:36: added a note to Learning probabilistic models of link structure
10:36: posted Link mining: a survey
10:36: added a note to Link mining: a survey
10:36: posted Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
10:36: added a note to Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
10:36: posted Functional organization of the yeast proteome by systematic analysis of protein complexes
10:36: added a note to Functional organization of the yeast proteome by systematic analysis of protein complexes
10:36: posted Leveraging Label-Independent Features for Classification in Sparsely Labeled Networks: An Empirical Study
10:36: posted Support vector machine classification and validation of cancer tissue samples using microarray expression data
10:36: added a note to Support vector machine classification and validation of cancer tissue samples using microarray expression data
10:36: posted Toward information extraction: identifying protein names from biological papers
10:36: added a note to Toward information extraction: identifying protein names from biological papers
10:36: posted Using Bayesian networks to analyze expression data
10:36: added a note to Using Bayesian networks to analyze expression data
10:36: posted Inferring cellular networks using probabilistic graphical models
10:36: added a note to Inferring cellular networks using probabilistic graphical models
10:36: posted GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
10:36: added a note to GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
10:36: posted Inferring topology from clustering coefficients in protein-protein interaction networks
10:36: added a note to Inferring topology from clustering coefficients in protein-protein interaction networks
10:36: posted Clustering by Passing Messages Between Data Points
10:36: added a note to Clustering by Passing Messages Between Data Points
10:36: posted A similarity-based method for genome-wide prediction of disease-relevant human genes
10:36: added a note to A similarity-based method for genome-wide prediction of disease-relevant human genes
10:36: posted Resolution limit in community detection
10:36: posted High-throughput two-hybrid analysis: The promise and the peril
10:36: posted A more efficient search strategy for aging genes based on connectivity
10:36: posted A more efficient search strategy for aging genes based on connectivity
10:36: added a note to A more efficient search strategy for aging genes based on connectivity
10:36: posted ROC Graphs: Notes and Practical Considerations for Researchers
10:36: posted Networks in life: scaling properties and eigenvalue spectra
10:36: posted Accuracy and Precision of Methods for Community Identification in Weighted Networks
10:36: posted Topological structural classes of complex networks
10:36: added a note to Topological structural classes of complex networks
10:36: posted Protein interaction maps for complete genomes based on gene fusion events
10:36: added a note to Protein interaction maps for complete genomes based on gene fusion events
10:36: posted Parallel Tuning of Support Vector Machine Learning Parameters for Large and Unbalanced Data Sets
10:36: posted Efficient Optimization of Support Vector Machine Learning Parameters for Unbalanced Data Sets
10:36: posted Cluster analysis and display of genome-wide expression patterns

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