djkt profile

Recent Activity

• 19:04: posted Spatial scaling of microbial eukaryote diversity
• 19:03: posted The diversity and biogeography of soil bacterial communities.
• 19:02: posted Larger Islands House More Bacterial Taxa
• 19:01: posted A taxa-area relationship for bacteria
• 19:00: posted The application of rarefaction techniques to molecular inventories of microbial diversity.
• 18:59: posted Quantitative and Qualitative {beta} Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
• 18:58: posted Global patterns in bacterial diversity
• 18:56: posted What is the extent of prokaryotic diversity?
• 18:53: posted Bioinformatics for whole-genome shotgun sequencing of microbial communities.
• 18:51: posted A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
• 18:50: posted Evaluating different approaches that test whether microbial communities have the same structure.
• 18:48: posted An application of statistics to comparative metagenomics.
• 18:47: posted The marine viromes of four oceanic regions.
• 18:45: posted UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
• 18:45: posted Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities
• 18:44: posted Testing for Differentiation of Microbial Communities Using Phylogenetic Methods: Accounting for Uncertainty of Phylogenetic Inference and Character State Mapping
• 18:42: posted Introducing TreeClimber, a test to compare microbial community structures.
• 18:41: posted Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.
• 18:39: posted Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries
• 18:30: posted Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.
• 18:28: posted Short pyrosequencing reads suffice for accurate microbial community analysis
• 18:27: posted Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
• 18:25: posted EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.
• 18:24: posted Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny.
• 18:23: posted FastGroup: a program to dereplicate libraries of 16S rDNA sequences.
• 18:21: posted Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.
• 18:20: posted NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
• 18:14: posted An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
• 18:12: posted Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.
• 18:09: posted SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
• 18:08: posted Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
• 18:04: posted Species divergence and the measurement of microbial diversity
• 18:00: posted Metagenomics: application of genomics to uncultured microorganisms.
• 17:59: posted Metagenomics: genomic analysis of microbial communities.
• 01:19: joined the group iSEEM
• 01:11: invitation from jlgreen to join the group iSEEM

• 23:06: posted High-resolution mapping of meiotic crossovers and non-crossovers in yeast
• 03:21: posted Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation

• 04:34: posted Relationship of Pax6 Activity Levels to the Extent of Eye Development in the Mouse, Mus musculus

• 17:16: posted On correcting the overestimation of the permutation based false discovery rate estimator.
• 17:15: posted The Ascent of the Abundant: How Mutational Networks Constrain Evolution
• 17:13: posted Dynamics of Genome Rearrangement in Bacterial Populations

• 21:09: posted Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
• 21:07: posted DNA methylation and structural and functional bimodality of vertebrate promoters.
• 21:05: posted Spatial and temporal heterogeneity in nucleotide sequence evolution.

• 23:47: posted Taxonomic distribution of large DNA viruses in the sea
• 23:40: posted The Recombinational Anatomy of a Mouse Chromosome
• 23:34: posted Evolution of Evolvability in Gene Regulatory Networks
• 17:59: posted Bayesian Survival Analysis in Genetic Association Studies.
• 17:50: posted Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
• 17:37: posted Confounding between recombination and selection, and the Ped/Pop method for detecting selection

• 17:04: posted Tracing Sub-Structure in the European American Population with PCA-Informative Markers
• 17:02: posted Pervasive and Persistent Redundancy among Duplicated Genes in Yeast

• 19:00: posted Phylogenetic Signal in the Eukaryotic Tree of Life
• 18:45: posted Revealing the architecture of gene regulation: the promise of eQTL studies

• 22:34: posted Asymmetric histone modifications between the original and derived loci of human segmental duplications
• 22:27: posted Automated mapping of large-scale chromatin structure in ENCODE.

• 22:32: posted Dissecting direct reprogramming through integrative genomic analysis

• 19:27: posted Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
• 19:20: posted Two strategies for gene regulation by promoter nucleosomes
• 19:18: posted Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions
• 19:18: posted A diversity profile of the human skin microbiota.
• 19:13: posted Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

• 20:02: posted Mouse segmental duplication and copy number variation
• 20:01: posted Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
• 19:58: posted Combinatorial patterns of histone acetylations and methylations in the human genome
• 19:56: posted Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
• 19:53: posted Estimating coverage and power for genetic association studies using near-complete variation data
• 19:50: posted Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes
• 19:47: posted Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

• 22:00: posted Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution