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Algorithms for Molecular Biology - Latest articles

最近発刊の雑誌の目次より: Algorithms for Molecular Biology - Latest articles
  • "Hook"-calibration of GeneChip-microarrays: Theory and algorithm
    Algorithms for Molecular Biology, Vol. 3, No. 1. (2008)
    by Hans Binder, Stephan Preibisch
  • "Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures
    Algorithms for Molecular Biology, Vol. 3, No. 1. (2008)
    by Hans Binder, Knut Krohn, Stephan Preibisch
  • A stitch in time: Efficient computation of genomic DNA melting bubbles
    Algorithms for Molecular Biology, Vol. 3, No. 1. (2008)
    by Eivind Tostesen
    posted by 1 person lptolik
  • Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps
    Algorithms for Molecular Biology, Vol. 3 (26 June 2008), 9.
    by Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Gobel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern
  • A weighted average difference method for detecting differentially expressed genes from microarray data
    Algorithms for Molecular Biology, Vol. 3 (26 June 2008), 8.
    by Koji Kadota, Yuji Nakai, Kentaro Shimizu
    posted by 3 people vertikalist BTS-PT-AS-CS beete
  • Noisy: identification of problematic columns in multiple sequence alignments
    Algorithms for Molecular Biology, Vol. 3 (24 June 2008), 7.
    by Andreas WM Dress, Christoph Flamm, Guido Fritzsch, Stefan Grunewald, Matthias Kruspe, Sonja J Prohaska, Peter F Stadler
  • DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
    Algorithms for Molecular Biology, Vol. 3 (27 May 2008), 6.
    by Amarendran R Subramanian, Michael Kaufmann, Burkhard Morgenstern
    posted by 2 people reyez dquest
  • On the optimality of the neighbor-joining algorithm
    Algorithms for Molecular Biology, Vol. 3 (30 April 2008), 5.
    by Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida
    posted by 4 people cmzmasek Tingting dquest joaocarrico
  • Protein sequence and structure alignments within one framework
    Algorithms for Molecular Biology, Vol. 3 (01 April 2008), 4.
    by Gundolf Schenk, Thomas Margraf, Andrew E Torda
    posted by 1 person pansapiens
  • A scoring matrix approach to detecting miRNA target sites
    Algorithms for Molecular Biology, Vol. 3 (31 March 2008), 3.
    by Simon Moxon, Vincent Moulton, Jan T Kim
    posted by 3 people dquest microRNA heliopais
  • Learning from positive examples when the negative class is undetermined- microRNA gene identification
    Algorithms for Molecular Biology, Vol. 3 (28 January 2008), 2.
    by Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe
    posted by 2 people jjheck jfr
  • Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability
    Algorithms for Molecular Biology, Vol. 3 (24 January 2008), 1.
    by Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You
  • Evaluating deterministic motif significance measures in protein databases
    Algorithms for Molecular Biology, Vol. 2 (24 December 2007), 16.
    by Pedro G Ferreira, Paulo J Azevedo
  • Efficient and accurate P-value computation for Position Weight Matrices
    Algorithms for Molecular Biology, Vol. 2, No. 1. (2007)
    by Helene Touzet, Jean S Varre
    posted by 3 people nklee barriot xili03
  • Review of "Reconstructing Evolution: New mathematical and computational advances" edited by Olivier Gascuel and Mike Steel
    Algorithms for Molecular Biology, Vol. 2 (06 November 2007), 14.
    by Andreas Spillner
  • Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
    Algorithms for Molecular Biology, Vol. 2 (10 October 2007), 13.
    by Valentina Boeva, Julien Clement, Mireille Regnier, Mikhail A Roytberg, Vsevolod J Makeev
    posted by 4 people csb_journal_club_public idonaldson guos isimpson
  • Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation
    Algorithms for Molecular Biology, Vol. 2 (03 October 2007), 12.
    by Rodrigo Gouveia-Oliveira, Anders G Pedersen
    posted by 4 people bicko nklee IrinaMoreira ca3295
  • Mapping sequences by parts
    Algorithms for Molecular Biology, Vol. 2 (19 September 2007), 11.
    by Gilles Didier, Carito Guziolowski
    posted by 1 person hpaces
  • A basic analysis toolkit for biological sequences
    Algorithms for Molecular Biology, Vol. 2 (18 September 2007), 10.
    by Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro
  • Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
    Algorithms for Molecular Biology, Vol. 2 (11 July 2007), 9.
    by Stefan Wolfsheimer, Bernd Burghardt, Alexander K Hartmann
  • Consistency of the Neighbor-Net Algorithm
    Algorithms for Molecular Biology, Vol. 2 (28 June 2007), 8.
    by David Bryant, Vincent Moulton, Andreas Spillner
  • Characteristics of predictor sets found using differential prioritization
    Algorithms for Molecular Biology, Vol. 2 (04 June 2007), 7.
    by Chia H Ooi, Madhu Chetty, Shyh W Teng
    posted by 1 person jfr
  • RNAstrand: reading direction of structured RNAs in multiple sequence alignments
    Algorithms for Molecular Biology, Vol. 2 (31 May 2007), 6.
    by Kristin Reiche, Peter F Stadler
  • GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
    Algorithms for Molecular Biology, Vol. 2 (30 May 2007), 5.
    by Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe
    posted by 1 person jyuh
  • Data Mining in Bioinformatics (BIOKDD)
    Algorithms for Molecular Biology, Vol. 2 (11 April 2007), 4.
    by Mohammed J Zaki, George Karypis, Jiong Yang
  • A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
    Algorithms for Molecular Biology, Vol. 2 (04 April 2007), 3.
    by Hui Yang, Srinivasan Parthasarathy, Duygu Ucar
  • Transcriptional regulatory network discovery via multiple method integration: application to e.coli K12
    Algorithms for Molecular Biology, Vol. 2 (30 March 2007), 2.
    by Jingjun Sun, Kagan Tuncay, Alaa A Haidar, Lisa Ensman, Frank Stanley, Mike Trelinski, Peter Ortoleva
  • PhyloScan: Identification of transcription factor binding sites using cross-species evidence
    Algorithms for Molecular Biology, Vol. 2 (23 January 2007), 1.
    by Steven C Carmack, Lee A Mccue, Lee A Newberg, Charles E Lawrence
    posted by 5 people dpollard dquest lusk nklee EisenLab
  • Probability-based model of protein-protein interactions on biological timescales
    Algorithms for Molecular Biology, Vol. 1 (11 December 2006), 25.
    by Alexander L Tournier, Paul W Fitzjohn, Paul A Bates
    posted by 1 person arjunan
  • A novel functional module detection algorithm for protein-protein interaction network
    Algorithms for Molecular Biology, Vol. 1 (05 December 2006), 24.
    by Woochang Hwang, Young-Rae Cho, Aidong Zhang, Murali Ramanathan
    posted by 2 people jfr laughcry
  • Refining motifs by improving information content scores using neighborhood profile search
    Algorithms for Molecular Biology, Vol. 1 (27 November 2006), 23.
    by Chandan K Reddy, Yao-Chung Weng, Hsiao-Dong Chiang
  • sMOTIF: Efficient structured pattern and profile motif search
    Algorithms for Molecular Biology, Vol. 1 (21 November 2006), 22.
    by Yongqiang Zhang, Mohammed J Zaki
    posted by 1 person kmdaily
  • EXMOTIF: Efficient Structured Motif Extraction
    Algorithms for Molecular Biology, Vol. 1 (16 November 2006), 21.
    by Yongqiang Zhang, Mohammed J Zaki
    posted by 1 person kmdaily
  • Reconstructing protein structure from solvent exposure using tabu search
    Algorithms for Molecular Biology, Vol. 1 (27 October 2006), 20.
    by Martin Paluszewski, Thomas Hamelryck, Pawel Winter
  • An enhanced RNA alignment benchmark for sequence alignment programs
    Algorithms for Molecular Biology, Vol. 1 (24 October 2006), 19.
    by Andreas Wilm, Indra Mainz, Gerhard Steger
    posted by 1 person dquest
  • Computing distribution of scale independent motifs in biological sequences
    Algorithms for Molecular Biology, Vol. 1 (18 October 2006), 18.
    by Jonas S Almeida, Susana Vinga
  • Pattern statistics on Markov chains and sensitivity to parameter estimation
    Algorithms for Molecular Biology, Vol. 1 (17 October 2006), 17.
    by Gregory Nuel
    posted by 1 person Ayest
  • Fast calculation of the quartet distance between trees of arbitrary degrees
    Algorithms for Molecular Biology, Vol. 1 (25 September 2006), 16.
    by Chris Christiansen, Thomas Mailund, Christian NS Pedersen, Martin Randers, Martin S Stissing
    posted by 1 person mailund
  • Automatic layout and visualization of biclusters
    Algorithms for Molecular Biology, Vol. 1 (04 September 2006), 15.
    by Gregory A Grothaus, Adeel Mufti, TM Murali
    posted by 1 person karfunkel
  • A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
    Algorithms for Molecular Biology, Vol. 1 (25 August 2006), 14.
    by Jonathan E Allen, Steven L Salzberg
    posted by 1 person wenhan
  • A combinatorial optimization approach for diverse motif finding applications
    Algorithms for Molecular Biology, Vol. 1 (17 August 2006), 13.
    by Elena Zaslavsky, Mona Singh
  • The approximability of the String Barcoding problem
    Algorithms for Molecular Biology, Vol. 1 (08 August 2006), 12.
    by Giuseppe Lancia, Romeo Rizzi
    posted by 1 person cthachuk
  • Inverse bifurcation analysis: application to simple gene systems
    Algorithms for Molecular Biology, Vol. 1 (21 July 2006), 11.
    by James Lu, Heinz W Engl, Peter Schuster
    posted by 1 person balabu
  • P-value based visualization of codon usage data
    Algorithms for Molecular Biology, Vol. 1 (29 June 2006), 10.
    by Peter Meinicke, Thomas Brodag, Wolfgang F Fricke, Stephan Waack
  • On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
    Algorithms for Molecular Biology, Vol. 1, No. 1. (31 May 2006), 9.
    by Katharina A Lehmann, Michael Kaufmann, Stephan Steigele, Kay Nieselt
    posted by 1 person dquest
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted by 12 people ana barry tuck chad_davis dquest lusk nklee structural_bioinformatics Bioinformatics maximilianh xi03 csdhwang
  • Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations
    Algorithms for Molecular Biology, Vol. 1, No. 1. (26 April 2006), 7.
    by Elena Zotenko, Katia S Guimarães, Raja Jothi, Teresa M Przytycka
    posted by 4 people lfriedl chad_davis kdl AbnerCYH
  • Multiple sequence alignment with user-defined anchor points
    Algorithms for Molecular Biology, Vol. 1 (19 April 2006), 6.
    by Burkhard Morgenstern, Sonja J Prohaska, Dirk Pöhler, Peter F Stadler
    posted by 1 person nklee
  • Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics
    Algorithms for Molecular Biology, Vol. 1 (07 April 2006), 5.
    by Grégory Nuel
    posted by 1 person Ema
  • Mining, compressing and classifying with extensible motifs
    Algorithms for Molecular Biology, Vol. 1 (23 March 2006), 4.
    by Alberto Apostolico, Matteo Comin, Laxmi Parida
    posted by 1 person GustavoLacerda
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