Group: Berkeley Mycology

2008-08-19

• 17:51: stajich posted The multiple lives of NMD factors: balancing roles in gene and genome regulation
• 16:25: stajich posted Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
• 02:11: stajich posted Differential gene expression between the biotrophic-like and saprotrophic mycelia of the witches' broom pathogen Moniliophthora perniciosa.

2008-08-17

• 20:29: stajich posted Annotation of stress-response proteins in the aspergilli.
• 20:29: stajich posted The evolution of 5S ribosomal RNA genes linked to the rDNA units of fungal species.
• 19:30: stajich posted Gene Expansion and Retention Leads to a Diverse Tyrosine Kinase Superfamily in Amphioxus
• 18:17: stajich posted BranchClust: A phylogenetic algorithm for selecting gene families
• 18:14: stajich posted ANTHRAX INVESTIGATION: Full-Genome Sequencing Paved the Way From Spores to a Suspect

2008-08-16

• 00:55: stajich posted Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective.
• 00:50: stajich posted A novel regulator couples sporogenesis and trehalose biogenesis in Aspergillus nidulans.
• 00:49: stajich posted Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.
• 00:46: stajich posted Multigene phylogeny of choanozoa and the origin of animals.
• 00:45: stajich posted Ecologic niche modeling of Blastomyces dermatitidis in Wisconsin.

2008-08-07

• 02:29: stajich posted The Yeast Spore Wall Enables Spores to Survive Passage through the Digestive Tract of Drosophila

2008-08-05

• 23:55: stajich posted Cell-Cell Adhesion in the Cnidaria: Insights Into the Evolution of Tissue Morphogenesis
• 23:53: stajich posted Estimate of the Mutation Rate per Nucleotide in Humans
• 16:53: stajich posted Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies

2008-08-04

• 23:51: stajich posted Conserved Secondary Structures in Aspergillus

2008-07-30

• 17:56: stajich posted Impact of whole genome amplification on analysis of copy number variants.

2008-07-28

• 18:45: stajich posted EVOLUTIONARY SIGNIFICANCE OF IMBALANCED NUCLEAR RATIOS WITHIN HETEROKARYONS OF THE BASIDIOMYCETE FUNGUS HETEROBASIDION PARVIPORUM.
• 06:20: stajich posted Identification of mating type genes in the bipolar basidiomycetous yeast Rhodosporidium toruloides: first insight into the MAT locus structure of the Sporidiobolales.
• 06:19: stajich posted An in silico analysis of cytochrome c from Phanerochaete chrysosporium: its amino acid sequence and characterization of gene structural elements.
• 06:18: stajich posted SCUMBLE: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation
• 06:18: stajich posted Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes.
• 02:32: stajich posted The Crystal Structure of [Fe]-Hydrogenase Reveals the Geometry of the Active Site

2008-07-27

• 23:01: stajich posted Report concludes that a fungal genome database is of "the highest priority".
• 08:14: stajich posted Mating System of the Anther Smut Fungus Microbotryum violaceum: Selfing under Heterothallism

2008-07-25

• 17:03: stajich posted GBParsy: A GenBank flatfile parser library with high speed
• 06:44: stajich posted EVOLUTION: Modernizing the Modern Synthesis

2008-07-21

• 05:56: stajich posted Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins.
• 05:55: stajich posted Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study
• 05:00: stajich posted An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae.
• 04:20: stajich posted Sexual attraction: on the role of fungal pheromone/receptor systems (A review).
• 04:14: stajich posted The asexual yeast Candida glabrata maintains distinct a and alpha haploid mating types.
• 04:13: stajich posted Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes.
• 04:12: stajich posted Exploring contradictory phylogenetic relationships in yeasts.
• 04:08: stajich posted A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae.

2008-07-16

• 17:55: stajich posted GENOMICS: Billion-Dollar Cancer Mapping Project Steps Forward
• 17:12: stajich posted Unraveling Protein Networks with Power Graph Analysis
• 12:29: stajich posted Conditional Variable Importance for Random Forests

2008-07-15

• 16:36: stajich posted How Well Does the HoT Score Reflect Sequence Alignment Accuracy?

2008-07-09

• 05:44: stajich posted A genome-wide 20K citrus microarray for gene expression analysis
• 00:20: stajich posted Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi

2008-07-08

• 22:45: stajich posted The ins and outs of plant cell walls.
• 22:08: stajich posted Growth of the plant cell wall
• 18:20: stajich posted Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
• 16:23: stajich posted A Gene Wiki for Community Annotation of Gene Function
• 06:59: stajich posted Cloning of cellulose synthesis related genes from Acetobacter xylinum ATCC23769 and ATCC53582: comparison of cellulose synthetic ability between strains.
• 06:59: stajich posted Genes required for cellulose synthesis in Agrobacterium tumefaciens
• 01:51: stajich posted Cellulose Synthesis in Phytophthora infestans Is Required for Normal Appressorium Formation and Successful Infection of Potato

2008-07-07

• 04:58: stajich posted Phylogenetic Signal in the Eukaryotic Tree of Life
• 03:50: stajich posted Degradation of cellulose by basidiomycetous fungi.
• 03:45: stajich posted Comparison of killer toxin-producing and non-producing strains of Filobasidium capsuligenum: proposal for two varieties.
• 03:42: stajich posted Neurospora crassa heat shock factor-1 is an essential gene; a second heat shock factor-like gene, hsf2, is required for asexual spore formation.
• 03:38: stajich posted VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism.
• 03:37: stajich posted The multiple gene duplication problem revisited.
• 03:36: stajich posted Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities
• 03:35: stajich posted Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici
• 03:32: stajich posted Escape from adaptive conflict after duplication in an anthocyanin pathway gene
• 03:32: stajich posted A max-margin model for efficient simultaneous alignment and folding of RNA sequences.

2008-07-02

• 01:18: stajich posted Meiotic silencing by unpaired DNA: properties, regulation and suppression.
• 01:18: stajich posted SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNA-directed RNA polymerase.
• 01:17: stajich posted Meiotic silencing by unpaired DNA.

2008-07-01

• 16:57: stajich posted Species Names in the <i>PhyloCode</i>: The Approach Adopted by the International Society for Phylogenetic Nomenclature
• 15:10: stajich posted Climate Change and the Future of California's Endemic Flora

2008-06-28

• 18:16: stajich posted Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

2008-06-27

• 05:04: stajich posted Assembly of Viral Metagenomes from Yellowstone Hot Springs