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Group: FAB-lab - with tag data-mining [41 articles]

グループ FAB-lab のメンバーが最近追加した論文の一覧 with tag data-mining
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to statistics methods data-mining by rvosa to the group FAB-lab on 2008-05-13 01:28:59 as ** along with 53 people and 2 groups jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu Bioinformatics baker-group
  • notes Relative position of the Cheirogaleidae in strepsirhine phylogeny: A comparison of morphological and molecular methods and results
    American Journal of Physical Anthropology, Vol. 94 (1994), pp. 24-46.
    by AD Yoder
    posted to animals bibtex-import biogeography cheirogaleidae data-mining mammals morphology phyloinformatics primates sequence strepsirrhines vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • Missing data, incomplete taxa, and phylogenetic accuracy
    Systematic Biology, Vol. 52, No. 4. (2003), pp. 528-538.
    by JJ Wiens
    posted to bibtex-import characters data-mining fossils methods parsimony phylogeny phyloinformatics simulation by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Ecological diversification and phylogeny of emydid turtles
    Biological Journal of the Linnean Society, Vol. 79, No. 4. (2003), pp. 577-610.
    by PR Stephens, JJ Wiens
    posted to animals bibtex-import data-mining diversification ecology evolution mitochondrial morphology phylogeny phyloinformatics specialization vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Inferring Complex Phylogenies Using Parsimony: An Empirical Approach Using Three Large DNA Data Sets for Angiosperms
    Systematic Biology, Vol. 47, No. 1. (1998), pp. 32-42.
    by DE Soltis, PS Soltis, ME Mort, MW Chase, V Savolainen, SB Hoot, CM Morton
    posted to bibtex-import data-mining parsimony phylogeny phyloinformatics plants by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • notes Primate Phylogeny: Morphological vs Molecular Results
    Molecular Phylogenetics and Evolution, Vol. 5, No. 1. (1996), pp. 102-154.
    by Jeheskel Shoshani, Colin P Groves, Elwyn L Simons, Gregg F Gunnell
    posted to animals bibtex-import characters data-mining mammals morphology phylogeny phyloinformatics primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • Review of morphological evidence on the phylogeny of basal Hymenoptera (Insecta), with a discussion of the ordering of characters
    Biological Journal of the Linnean Society, Vol. 79, No. 2. (2003), pp. 209-243.
    by S Schulmeister
    posted to animals bibtex-import characters data-mining insects invertebrates methods morphology phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:25 as **
  • Phylogenetics of Flowering Plants Based on Combined Analysis of Plastid atpB and rbcL Gene Sequences
    Systematic Biology, Vol. 49, No. 2. (2000), pp. 306-362.
    by Vincent Savolainen, Mark W Chase, Sara B Hoot, Cynthia M Morton, Douglas E Soltis, Clemens Bayer
    posted to bibtex-import data-mining genetics phylogeny phyloinformatics plants by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as **
  • The growth of phylogenetic information and the need for a phylogenetic database
    Systematic Biology, Vol. 42 (1993), pp. 562-568.
    by Michael J Sanderson, B Baldwin, G Bharathan, C Campbell, D Ferguson, JM Porter, CV Dohlen, MF Wojciechowski, MJ Donoghue
    posted to bibtex-import databases data-mining phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as **
  • notes Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets
    Molecular Biology and Evolution, Vol. 14 (1997), pp. 248-265.
    by Maryellen Ruvolo
    posted to animals bibtex-import data-mining hominidae humans mammals phyloinformatics primates vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as **
  • Phylogenetic data base schema
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 159-159.
    by KC Nixon
    posted to bibtex-import databases data-mining phylogeny phyloinformatics programming by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as **
  • Sampling strategies for delimiting species: Genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata : Liolaemidae) in Andean-Patagonian South America
    Systematic Biology, Vol. 52, No. 2. (2003), pp. 159-185.
    by M Morando, LJ Avila, JW Sites
    posted to animals bibtex-import biodiversity biogeography data-mining evolution lizards methods phyloinformatics population population-genetics regions speciation substitution-models taxonomy vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as **
  • Phylogeny and evolution of calcareous sponges: Monophyly of Calcinea and Calcaronea, high level of morphological homoplasy, and the primitive nature of axial symmetry
    Systematic Biology, Vol. 52, No. 3. (2003), pp. 311-333.
    by M Manuel, C Borchiellini, E Alivon, Y Le Parco, J Vacelet, Boury N Esnault
    posted to animals bibtex-import characters classification data-mining evolution morphology phylogeny phyloinformatics reconstruction by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as **
  • Mesquite: a modular system for evolutionary analysis.
    (2001)
    by Wayne P Maddison, DR Maddison
    posted to alignment bibtex-import comparative data-mining evolution phylogeny phyloinformatics programming software by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as **
  • Phylogenetic utility of the first two introns of the S7 ribosomal protein gene in African electric fishes (Mormyroidea: Teleostei) and congruence with other molecular markers
    Biological Journal of the Linnean Society, Vol. 78, No. 2. (2003), pp. 273-292.
    by S Lavoue, JP Sullivan, CD Hopkins
    posted to animals bibtex-import data-mining fishes phylogeny phyloinformatics vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • Type ISTS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia : Carnivora)
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 571-593.
    by KP Koepfli, RK Wayne
    posted to animals bayesian bibtex-import carnivora data-mining genetics likelihood mitochondrial nuclear parsimony phylogeny phyloinformatics vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    Systematic Zoology, Vol. 38 (1989), pp. 7-25.
    by AG Kluge
    posted to animals bibtex-import data-mining methods phylogeny phyloinformatics vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • Out of Africa: molecular phylogenetics and biogeography of Wolffiella (Lemnaceae)
    Biological Journal of the Linnean Society, Vol. 79, No. 4. (2003), pp. 565-576.
    by RT Kimball, DJ Crawford, DH Les, E Landolt
    posted to bibtex-import biogeography classification data-mining morphology plants substitution-models taxonomy by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • notes Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data
    American Journal of Physical Anthropology, Vol. 106 (1998), pp. 261-281.
    by Ines Horovitz, Rafael Zardoya, Axel Meyer
    posted to animals bibtex-import data-mining mammals mitochondrial morphology primates source-trees vertebrates weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:13 as **
  • notes Molecular systematics of Old World monkey tribe Papionini: analysis of the total available genetic sequences
    Journal of Human Evolution, Vol. 38 (2000), pp. 235-256.
    by EE Harris
    posted to animals bibtex-import data-mining genetics mammals phylogeny primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:11 as **
  • Phylogeny and Systematic Position of Opiliones: A Combined Analysis of Chelicerate Relationships Using Morphological and Molecular Data
    Cladistics, Vol. 18 (2002), pp. 5-70.
    by G Giribet, GD Edgecombe, Ward C Wheeler, C Babbit
    posted to animals bibtex-import classification data-mining invertebrates morphology phylogeny sequence by rvosa to the group FAB-lab on 2008-02-06 23:58:09 as **
  • Resolution of a supertree/supermatrix paradox
    Systematic Biology, Vol. 51 (2002), pp. 652-664.
    by J Gatesy, C Matthee, Rob Desalle, C Hayashi
    posted to bibtex-import data-mining methods mrp supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:08 as **
  • Sources of character conflict in a clade of water striders (Heteroptera : Gerridae)
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 6. (2003), pp. 512-526.
    by J Damgaard, AI Cognato
    posted to animals bibtex-import characters data-mining dna insects invertebrates methods mitochondrial morphology parsimony reconstruction topology by rvosa to the group FAB-lab on 2008-02-06 23:58:06 as **
  • notes Disparate Data Sets Resolve Squirrel Monkey (Saimiri) Taxonomy: Implications for Behavioral Ecology and Biomedial Usage
    International Journal of Primatology, Vol. 20, No. 2. (1999), pp. 237-256.
    by S Boinski, SJ Cropp
    posted to animals behaviour bibtex-import data-mining mammals phylogeny phyloinformatics primates source-trees speciation taxonomy vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:03 as **
  • Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
    Taxon, Vol. 41 (1992), pp. 3-10.
    by BR Baum
    posted to algorithms bibtex-import data-mining methods mrp phyloinformatics supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:02 as **
  • notes Pan paniscus and Hominoid Phylogeny: Morphological Data, Molecular Data and 'Total Evidence'
    Folia Primatologia, Vol. 68 (1997), pp. 50-56.
    by Veronique Barriel
    posted to animals bibtex-import data-mining dna hominidae mammals morphology nuclear parsimony phylogeny phyloinformatics primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:02 as **
  • Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom
    BMC Evolutionary Biology, Vol. 7 (09 August 2007), 134.
    by Eiko E Kuramae, Vincent Robert, Carlos Echavarri-Erasun, Teun Boekhout
    posted to algorithms amino-acid data-mining fungi methods phylogenomics phylogeny phyloinformatics proteins by rvosa to the group FAB-lab on 2008-02-01 11:30:06 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.
    Gene, Vol. 383 (15 November 2006), pp. 24-32.
    by RA Cramer, JE Stajich, Y Yamanaka, FS Dietrich, WJ Steinbach, JR Perfect
    posted to amino-acid data-mining dna methods phylogenomics proteins by rvosa to the group FAB-lab on 2008-02-01 11:22:31 as ** along with 1 person stajich
  • Profiling Phylogenetic Informativeness
    Systematic Biology, Vol. 56, No. 2. (2007), pp. 222-231.
    by Jeffrey P Townsend
    posted to algorithms animals characters data-mining mammal mammals methods mice phylogeny phyloinformatics rodents vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:18:23 as ** along with 3 people and 1 group aprasad stajich Jporci Berkeley Mycology
  • Detecting and overcoming systematic errors in genome-scale phylogenies.
    Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399.
    by N Rodríguez-Ezpeleta, H Brinkmann, B Roure, N Lartillot, BF Lang, H Philippe
    posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 11:12:39 as ** along with 3 people and 1 group aprasad stajich dandaman Berkeley Mycology
  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
    Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521.
    by RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, S Scherer, G Scott, D Steffen, KC Worley, PE Burch, G Okwuonu, S Hines, L Lewis, C DeRamo, O Delgado, S Dugan-Rocha, G Miner, M Morgan, A Hawes, R Gill, Celera, RA Holt, MD Adams, PG Amanatides, H Baden-Tillson, M Barnstead, S Chin, CA Evans, S Ferriera, C Fosler, A Glodek, Z Gu, D Jennings, CL Kraft, T Nguyen, CM Pfannkoch, C Sitter, GG Sutton, JC Venter, T Woodage, D Smith, HM Lee, E Gustafson, P Cahill, A Kana, L Doucette-Stamm, K Weinstock, K Fechtel, RB Weiss, DM Dunn, ED Green, RW Blakesley, GG Bouffard, PJ De Jong, K Osoegawa, B Zhu, M Marra, J Schein, I Bosdet, C Fjell, S Jones, M Krzywinski, C Mathewson, A Siddiqui, N Wye, J McPherson, S Zhao, CM Fraser, J Shetty, S Shatsman, K Geer, Y Chen, S Abramzon, WC Nierman, PH Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, B Li, Y Liu, X Qin, S Cawley, KC Worley, AJ Cooney, LM D'Souza, K Martin, JQ Wu, ML Gonzalez-Garay, AR Jackson, KJ Kalafus, MP McLeod, A Milosavljevic, D Virk, A Volkov, DA Wheeler, Z Zhang, JA Bailey, EE Eichler, E Tuzun, E Birney, E Mongin, A Ureta-Vidal, C Woodwark, E Zdobnov, P Bork, M Suyama, D Torrents, M Alexandersson, BJ Trask, JM Young, H Huang, H Wang, H Xing, S Daniels, D Gietzen, J Schmidt, K Stevens, U Vitt, J Wingrove, F Camara, M Mar Albà, JF Abril, R Guigo, A Smit, I Dubchak, EM Rubin, O Couronne, A Poliakov, N Hübner, D Ganten, C Goesele, O Hummel, T Kreitler, YA Lee, J Monti, H Schulz, H Zimdahl, H Himmelbauer, H Lehrach, HJ Jacob, S Bromberg, J Gullings-Handley, MI Jensen-Seaman, AE Kwitek, J Lazar, D Pasko, PJ Tonellato, S Twigger, CP Ponting, JM Duarte, S Rice, L Goodstadt, SA Beatson, RD Emes, EE Winter, C Webber, P Brandt, G Nyakatura, M Adetobi, F Chiaromonte, L Elnitski, P Eswara, RC Hardison, M Hou, D Kolbe, K Makova, W Miller, A Nekrutenko, C Riemer, S Schwartz, J Taylor, S Yang, Y Zhang, K Lindpaintner, TD Andrews, M Caccamo, M Clamp, L Clarke, V Curwen, R Durbin, E Eyras, SM Searle, GM Cooper, S Batzoglou, M Brudno, A Sidow, EA Stone, JC Venter, BA Payseur, G Bourque, C López-Otín, XS Puente, K Chakrabarti, S Chatterji, C Dewey, L Pachter, N Bray, VB Yap, A Caspi, G Tesler, PA Pevzner, D Haussler, KM Roskin, R Baertsch, H Clawson, TS Furey, AS Hinrichs, D Karolchik, WJ Kent, KR Rosenbloom, H Trumbower, M Weirauch, DN Cooper, PD Stenson, B Ma, M Brent, M Arumugam, D Shteynberg, RR Copley, MS Taylor, H Riethman, U Mudunuri, J Peterson, M Guyer, A Felsenfeld, S Old, S Mockrin, F Collins,
    posted to animals data-mining genetics genome mammals phylogenomics rats rodents sequence vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:08:27 as ** along with 5 people and 3 groups aprasad ccots dchughes djkt stajich G4ID Genetics-of-Gambling Berkeley Mycology
  • The Bioperl Toolkit: Perl Modules for the Life Sciences
    Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618.
    by Jason E Stajich, David Block, Kris Boulez, Steven E Brenner, Stephen A Chervitz, Chris Dagdigian, Georg Fuellen, James G Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J Mungall, Brian I Osborne, Matthew R Pocock, Peter Schattner, Martin Senger, Lincoln D Stein, Elia Stupka, Mark D Wilkinson, Ewan Birney
    posted to algorithms alignment databases data-mining methods programming software by rvosa to the group FAB-lab on 2008-02-01 11:05:23 as ** along with 17 people and 1 group ninch jmeppley chad_davis indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi EisenLab
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to algorithms amino-acid animals data-mining genetics genome hominidae homology humans mammals methods phylogenomics primates proteins rna sequence vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:04:06 as ** along with 15 people and 2 groups Ema tmmurali balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio EisenLab Berkeley Mycology
  • Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
    Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383.
    by Giddy Landan, Dan Graur
    posted to algorithms alignment amino-acid data-mining dna methods phylogeny phyloinformatics sequence by rvosa to the group FAB-lab on 2008-02-01 11:01:06 as ** along with 7 people aprasad BioNica stajich cjeans zwang lilou mailund
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
    posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 10:57:03 as ** along with 8 people and 2 groups cerca natstreet icases operon indigoviolet stajich cjeans winterschlaefer EisenLab TNT
  • NEXUS: An Extensible File Format for Systematic Information
    Systematic Biology, Vol. 46, No. 4. (1997), pp. 590-621.
    by David R Maddison, David L Swofford, Wayne P Maddison
    posted to data-mining phyloinformatics software by rvosa to the group FAB-lab on 2007-11-29 08:27:27 as **
  • An XML-based system for synthesis of data from disparate databases.
    J Am Med Inform Assoc, Vol. 13, No. 3. (n 2006), pp. 289-301.
    by T Kurc, DA Janies, AD Johnson, S Langella, S Oster, S Hastings, F Habib, T Camerlengo, D Ervin, UV Catalyurek, JH Saltz
    posted to comparative data-mining phyloinformatics reconstruction software by rvosa to the group FAB-lab on 2007-11-27 23:34:47 as **
  • Comparative tests of ectoparasite species richness in seabirds
    BMC Evolutionary Biology, Vol. 7 (15 November 2007), 227.
    by Joseph Hughes, Roderic DM Page
    posted to alcids behaviour biodiversity comparative data-mining life-history parasitism phylogeny taxonomy by rvosa to the group FAB-lab on 2007-11-25 02:30:57 as **
  • Information-based clustering
    Proceedings of the National Academy of Sciences, Vol. 102, No. 51. (2005), pp. 18297-18302.
    by Noam Slonim, Gurinder S Atwal, Gasper Tkacik, William Bialek
    posted to cluster-analysis data-analysis data-exploration data-mining information-theory statistics-multivariate by cmm to the group FAB-lab on 2006-02-19 02:05:02 as **
  • Prospects for building the tree of life from large sequence databases.
    Science, Vol. 306, No. 5699. (12 November 2004), pp. 1172-1174.
    by AC Driskell, C Ané, JG Burleigh, MM McMahon, BC O'meara, MJ Sanderson
    posted to data-mining inference phylogeny phyloinformatics by rvosa to the group FAB-lab on 2005-10-13 12:57:20 as **
  • The small-world dynamics of tree networks and data mining in phyloinformatics.
    Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1162-1168.
    by WH Piel, MJ Sanderson, MJ Donoghue
    posted to data-mining networks phylogeny phyloinformatics by rvosa to the group FAB-lab on 2005-10-13 12:56:43 as **
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