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Group: Nie - library [195 articles]

グループ Nie のメンバーが最近追加した論文の一覧
  • The evolution of gene regulation by transcription factors and microRNAs
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 93-103.
    by Kevin Chen, Nikolaus Rajewsky
    posted to gene_regulation by penka to the group Nie on 2007-01-23 22:47:41 as ** along with 19 people and 3 groups heliopais bootsy aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena EisenLab microRNA GIG
  • Comprehensive splice-site analysis using comparative genomics.
    Nucleic Acids Res (12 August 2006)
    by Nihar Sheth, Xavier Roca, Michelle L L Hastings, Ted Roeder, Adrian R R Krainer, Ravi Sachidanandam
    posted to introns_splicing by penka to the group Nie on 2007-01-22 23:34:28 as ** along with 3 people and 1 group aprasad indigoviolet ankur_iitg EisenLab
  • Reference based annotation with GeneMapper.
    Genome Biol, Vol. 7, No. 4. (5 April 2006)
    by Sourav Chatterji, Lior Pachter
    posted to 12dros by penka to the group Nie on 2006-08-30 04:16:01 as read along with 4 people and 1 group skumagai indigoviolet dpollard wenhan EisenLab
  • A strategy for probing the function of noncoding RNAs finds a repressor of NFAT.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1570-1573.
    by AT Willingham, AP Orth, S Batalov, EC Peters, BG Wen, P Aza-Blanc, JB Hogenesch, PG Schultz
    posted to introns_conserved_seqs by penka to the group Nie on 2006-08-28 12:10:50 as ** along with 2 people sglandt mtagaya
  • Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs
    Human Molecular Genetics, Vol. 15, No. 13. (1 July 2006), pp. 2098-2105.
    by Bernat, A John, Crawford, E Gregory, Ogurtsov, Y Aleksey, Collins, S Francis, Ginsburg, David, Kondrashov, S Alexey
    posted to introns_conserved_seqs by penka to the group Nie on 2006-08-18 11:45:03 as *****
  • Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila
    Genome Res., Vol. 14, No. 2. (1 February 2004), pp. 273-279.
    by Daniel L Halligan, Adam Eyre-Walker, Peter Andolfatto, Peter D Keightley
    posted to introns1 by penka to the group Nie on 2006-08-18 11:21:56 as ***
  • Evolutionary constraints in conserved nongenic sequences of mammals
    Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1373-1378.
    by Peter D Keightley, Gregory V Kryukov, Shamil Sunyaev, Daniel L Halligan, Daniel J Gaffney
    posted to introns1 by penka to the group Nie on 2006-08-18 11:19:34 as *** along with 3 people miniprep lilou ankur_iitg
  • Intron evolution as a population-genetic process.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 6118-6123.
    by M Lynch
    posted to introns1 by penka to the group Nie on 2006-08-17 09:45:44 as ****
  • Alu-containing exons are alternatively spliced.
    Genome Res, Vol. 12, No. 7. (July 2002), pp. 1060-1067.
    by R Sorek, G Ast, D Graur
    posted to splicing by penka to the group Nie on 2006-08-17 09:45:23 as ** along with 2 people and 2 groups dchughes N0131826 G4ID Genetics-of-Gambling
  • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.
    Genome Res (2 June 2006)
    by Daniel L L Halligan, Peter D D Keightley
    posted to introns1 by penka to the group Nie on 2006-08-15 02:07:18 as *** along with 5 people and 2 groups RMGraze dpollard jri cisevol emptyhb EisenLab cis-regulatory-evolution
  • Insertion/Deletion and Nucleotide Polymorphism Data Reveal Constraints in Drosophila melanogaster Introns and Intergenic Regions
    Genetics, Vol. 169, No. 3. (1 March 2005), pp. 1521-1527.
    by Lino Ometto, Wolfgang Stephan, David De Lorenzo
    posted to introns1 introns_drosophila by penka to the group Nie on 2006-08-15 02:03:09 as ** along with 2 people smbe2008 cisevol
  • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345.
    by CM Bergman, M Kreitman
    posted to introns1 by penka to the group Nie on 2006-06-11 05:15:07 as ** along with 4 people and 1 group brant adijr cisevol hugoparker cis-regulatory-evolution
  • Evidence for DNA loss as a determinant of genome size.
    Science, Vol. 287, No. 5455. (11 February 2000), pp. 1060-1062.
    by DA Petrov, TA Sangster, JS Johnston, DL Hartl, KL Shaw
    posted to introns1 by penka to the group Nie on 2006-06-11 04:59:02 as ** along with 1 person and 1 group dpollard EisenLab
  • Intron Size and Genome Size in Plants
    Mol Biol Evol, Vol. 19, No. 12. (1 December 2002), pp. 2346-2352.
    by Jonathan F Wendel, Richard C Cronn, Ines Alvarez, Bao Liu, Randall L Small, David S Senchina
    posted to introns1 by penka to the group Nie on 2006-06-11 04:49:22 as **
  • The C-value Enigma in Plants and Animals: A Review of Parallels and an Appeal for Partnership
    Ann Bot, Vol. 95, No. 1. (1 January 2005), pp. 133-146.
    by Ryan T Gregory
    posted to no-tag by penka to the group Nie on 2006-06-11 04:47:38 as **
  • Intron-genome size relationship on a large evolutionary scale.
    J Mol Evol, Vol. 49, No. 3. (September 1999), pp. 376-384.
    by AE Vinogradov
    posted to genome_size_introns introns1 by penka to the group Nie on 2006-06-11 04:40:59 as *** along with 1 person lilou
  • Genome size and intron size in Drosophila.
    Mol Biol Evol, Vol. 15, No. 6. (June 1998), pp. 770-773.
    by EN Moriyama, DA Petrov, DL Hartl
    posted to drosophila genome_size introns1 by penka to the group Nie on 2006-06-05 06:44:30 as *** along with 2 people brant lilou
  • Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup
    Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 162-167.
    by Matthieu Boulesteix, Michele Weiss, Christian Biemont
    posted to drosophila genome_size by penka to the group Nie on 2006-06-05 06:38:11 as **
  • Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements?
    Mol Biol Evol, Vol. 19, No. 7. (July 2002), pp. 1154-1161.
    by C Vieira, C Nardon, C Arpin, D Lepetit, C Biémont
    posted to drosophila genome_size te by penka to the group Nie on 2006-06-05 06:18:59 as **
  • A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions.
    PLoS Comput Biol, Vol. 2, No. 3. (17 March 2006)
    by Gustavo Glusman, Shizhen Qin, M Raafat R El-Gewely, Andrew F F Siegel, Jared C C Roach, Leroy Hood, Arian F A F Smit
    posted to read_next_interesting by penka to the group Nie on 2006-06-04 09:24:44 as ** along with 1 person jfr
  • Widespread occurrence of antisense transcription in the human genome.
    Nat Biotechnol, Vol. 21, No. 4. (April 2003), pp. 379-386.
    by R Yelin, D Dahary, R Sorek, EY Levanon, O Goldstein, A Shoshan, A Diber, S Biton, Y Tamir, R Khosravi, S Nemzer, E Pinner, S Walach, J Bernstein, K Savitsky, G Rotman
    posted to human introns read_next transcription by penka to the group Nie on 2006-06-04 09:19:39 as **** along with 2 people mtagaya saru
  • Human antisense genes have unusually short introns: evidence for selection for rapid transcription
    Trends in Genetics, Vol. 21, No. 4. (April 2005), pp. 203-207.
    by Jianjun Chen, Miao Sun, Laurence D Hurst, Gordon G Carmichael, Janet D Rowley
    posted to introns by penka to the group Nie on 2006-06-04 09:16:49 as **
  • "Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison
    Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 347-354.
    by Alexander E Vinogradov
    posted to introns by penka to the group Nie on 2006-06-04 09:10:14 as ** along with 5 people and 1 group aprasad tuck indigoviolet miniprep lilou EisenLab
  • A periodic pattern of mRNA secondary structure created by the genetic code
    Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2428-2437.
    by Svetlana A Shabalina, Aleksey Y Ogurtsov, Nikolay A Spiridonov
    posted to protein_evolution read_next by penka to the group Nie on 2006-06-04 07:29:58 as ** along with 2 people eckart_bindewald raylim
  • Intron Size and Exon Evolution in Drosophila
    Genetics, Vol. 170, No. 1. (1 May 2005), pp. 481-485.
    by Gabriel Marais, Pierre Nouvellet, Peter D Keightley, Brian Charlesworth
    posted to introns1 by penka to the group Nie on 2006-06-04 07:16:27 as *** along with 1 person lilou
  • Why do genes have introns? Recombination might add a new piece to the puzzle
    Trends in Genetics, Vol. 17, No. 4. (1 April 2001), pp. 172-175.
    by Laurent Duret
    posted to introns introns1 by penka to the group Nie on 2006-06-04 06:34:51 as *** along with 1 person miniprep
  • Intrinsically unstructured proteins and their functions
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208.
    by Jane J Dyson, Peter E Wright
    posted to positive_selection protein_evolution read_next by penka to the group Nie on 2006-06-04 03:11:53 as ***** along with 2 people chad_davis cactus
  • The Origins of Eukaryotic Gene Structure
    Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468.
    by Michael Lynch
    posted to introns1 by penka to the group Nie on 2006-06-03 10:16:56 as ** along with 22 people and 8 groups karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin EisenLab Computational_Systems_Biology FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
  • Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues
    FEBS Letters, Vol. 565, No. 1-3. (7 May 2004), pp. 127-132.
    by Laszlo Banyai, Laszlo Patthy
    posted to introns introns1 by penka to the group Nie on 2006-06-03 10:16:27 as ** along with 1 person tny
  • Introns and the origin of nucleusâcytosol compartmentalization
    Nature, Vol. 440, No. 7080., pp. 41-45.
    by William Martin, Eugene V Koonin
    posted to introns by penka to the group Nie on 2006-06-03 10:15:21 as ** along with 5 people and 3 groups lyenh dayjm bala marcius tny BioinfoCIPF SGU-CIPF DictyosteliumGroup
  • The evolutionary fate and consequences of duplicate genes.
    Science, Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155.
    by M Lynch, JS Conery
    posted to duplicate_genes duplication by penka to the group Nie on 2006-05-17 10:23:24 as **
  • Identification and analysis of alternative splicing events conserved in human and mouse
    PNAS, Vol. 102, No. 8. (22 February 2005), pp. 2850-2855.
    by Gene W Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, Christopher B Burge
    posted to introns splicing by penka to the group Nie on 2006-05-03 21:01:33 as ** along with 3 people eoghanharr radek stajich
  • Worm genomes hold the smoking guns of intron gain.
    Proc Natl Acad Sci U S A, Vol. 101, No. 31. (3 August 2004), pp. 11195-11196.
    by JM Logsdon
    posted to introns by penka to the group Nie on 2006-05-02 00:02:06 as *****
  • A new Drosophila spliceosomal intron position is common in plants.
    Proc Natl Acad Sci U S A, Vol. 100, No. 11. (27 May 2003), pp. 6580-6583.
    by R Tarrio, F Rodríguez-Trelles, FJ Ayala
    posted to drosophila introns by penka to the group Nie on 2006-05-01 23:55:58 as **
  • Mystery of intron gain.
    Genome Res, Vol. 13, No. 10. (October 2003), pp. 2236-2241.
    by A Fedorov, S Roy, L Fedorova, W Gilbert
    posted to introns by penka to the group Nie on 2006-05-01 23:48:20 as ****
  • Origins of recently gained introns in Caenorhabditis.
    Proc Natl Acad Sci U S A, Vol. 101, No. 31. (3 August 2004), pp. 11362-11367.
    by A Coghlan, KH Wolfe
    posted to elegans introns by penka to the group Nie on 2006-05-01 23:45:35 as *****
  • New maximum likelihood estimators for eukaryotic intron evolution.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by HD Nguyen, M Yoshihama, N Kenmochi
    posted to introns methods by penka to the group Nie on 2006-05-01 23:42:21 as ***
  • Conservation versus parallel gains in intron evolution.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1741-1748.
    by AV Sverdlov, IB Rogozin, VN Babenko, EV Koonin
    posted to introns orthologs by penka to the group Nie on 2006-05-01 23:40:20 as ****
  • The evolutionary gain of spliceosomal introns: sequence and phase preferences.
    Mol Biol Evol, Vol. 21, No. 7. (July 2004), pp. 1252-1263.
    by WG Qiu, N Schisler, A Stoltzfus
    posted to introns by penka to the group Nie on 2006-05-01 23:38:38 as ***
  • Prevalence of intron gain over intron loss in the evolution of paralogous gene families.
    Nucleic Acids Res, Vol. 32, No. 12. (2004), pp. 3724-3733.
    by VN Babenko, IB Rogozin, SL Mekhedov, EV Koonin
    posted to introns by penka to the group Nie on 2006-05-01 23:37:45 as **** along with 1 person miniprep
  • The evolution of spliceosomal introns.
    Curr Opin Genet Dev, Vol. 12, No. 6. (December 2002), pp. 701-710.
    by M Lynch, AO Richardson
    posted to no-tag by penka to the group Nie on 2006-05-01 23:35:12 as ***
  • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content.
    Genome Biol, Vol. 6, No. 8. (2005)
    by PR Haddrill, B Charlesworth, DL Halligan, P Andolfatto
    posted to drosophila introns introns1 by penka to the group Nie on 2006-05-01 23:21:54 as **** along with 2 people and 1 group lilou cisevol cis-regulatory-evolution
  • Selective constraints on intron evolution in Drosophila.
    Genetics, Vol. 165, No. 4. (December 2003), pp. 1843-1851.
    by J Parsch
    posted to drosophila introns introns1 by penka to the group Nie on 2006-05-01 23:20:51 as ****
  • An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes.
    Mol Cell Biol, Vol. 24, No. 5. (March 2004), pp. 1855-1869.
    by P Scamborova, A Wong, JA Steitz
    posted to introns by penka to the group Nie on 2006-05-01 23:17:05 as **
  • Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe.
    Mol Cell Biol, Vol. 20, No. 21. (November 2000), pp. 7955-7970.
    by CM Romfo, CJ Alvarez, WJ van Heeckeren, CJ Webb, JA Wise
    posted to introns by penka to the group Nie on 2006-05-01 23:16:35 as **
  • Introns and splicing elements of five diverse fungi.
    Eukaryot Cell, Vol. 3, No. 5. (October 2004), pp. 1088-1100.
    by DM Kupfer, SD Drabenstot, KL Buchanan, H Lai, H Zhu, DW Dyer, BA Roe, JW Murphy
    posted to introns by penka to the group Nie on 2006-05-01 23:16:06 as ** along with 5 people and 1 group jwestbrook alexl GustavoLacerda angieju seitentaisei King_Lab
  • Genomic sequence, splicing, and gene annotation.
    Am J Hum Genet, Vol. 67, No. 4. (October 2000), pp. 788-792.
    by SM Mount
    posted to introns by penka to the group Nie on 2006-05-01 23:15:03 as ****
  • Intron Size Correlates Positively With Recombination Rate in Caenorhabditis elegans
    Genetics, Vol. 166, No. 3. (1 March 2004), pp. 1585-1590.
    by Anuphap Prachumwat, Laura Devincentis, Michael F Palopoli
    posted to elegans introns by penka to the group Nie on 2006-05-01 23:10:20 as **
  • Influence of intron length on alternative splicing of CD44.
    Mol Cell Biol, Vol. 18, No. 10. (October 1998), pp. 5930-5941.
    by MV Bell, AE Cowper, MP Lefranc, JI Bell, GR Screaton
    posted to introns by penka to the group Nie on 2006-05-01 23:09:04 as *
  • What controls the length of noncoding DNA?
    Curr Opin Genet Dev, Vol. 11, No. 6. (December 2001), pp. 652-659.
    by JM Comeron
    posted to noncodingdna by penka to the group Nie on 2006-05-01 22:53:53 as ** along with 3 people aprasad miniprep lilou
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