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Group: Bioinformatics - with tag structural_bioinformatics [25 articles]

グループ Bioinformatics のメンバーが最近追加した論文の一覧 with tag structural_bioinformatics
  • Multivariate Analysis of Conserved Sequence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain
    Journal of Molecular Biology, Vol. 368, No. 5. (18 May 2007), pp. 1231-1248.
    by Barry J Grant, Andrew J Mccammon, Leo S Caves, Robert A Cross
    posted to torsion_angles swi-swii structural_bioinformatics sca r protein_structure protein_sequence protein_dynamics pca p-loop ntpases molecular_motors mine kinesin domain_motions correlated_motions core_structure clustering bioinf_methods by barry to the group Bioinformatics on 2007-04-27 17:41:06 as read along with 3 people and 1 group choonpeng cactus insectopalo structural_bioinformatics
  • Evolution and physics in comparative protein structure modeling.
    Acc Chem Res, Vol. 35, No. 6. (June 2002), pp. 413-421.
    by A Fiser, M Feig, CL Brooks, A Sali
    posted to comparative_model protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2006-03-02 22:30:37 as *** along with 2 people and 1 group vavi insectopalo structural_bioinformatics
  • Pairwise protein structure alignment based on an orientation-independent backbone representation.
    J Bioinform Comput Biol, Vol. 2, No. 4. (December 2004), pp. 699-717.
    by J Ye, R Janardan, S Liu
    posted to bioinf_methods protein_structure structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2006-01-25 03:30:29 as * along with 1 group structural_bioinformatics
  • Comparative molecular dynamics--similar folds and similar motions?
    Proteins, Vol. 61, No. 4. (1 December 2005), pp. 809-822.
    by Andrew Pang, Yalini Arinaminpathy, Mark S Sansom, Philip C Biggin
    posted to md_simulation structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2005-11-29 23:22:16 as * along with 1 group structural_bioinformatics
  • Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding.
    Protein Sci, Vol. 3, No. 5. (May 1994), pp. 769-778.
    by D Fischer, H Wolfson, SL Lin, R Nussinov
    posted to bioinf_methods protein_design protein_evolution protein_structure structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2005-09-19 22:03:37 as ***** along with 4 people and 1 group aalibes shadowman tjimenez chrys structural_bioinformatics
  • Small Libraries of Protein Fragments Model Native Protein Structures Accurately
    Journal of Molecular Biology, Vol. 323, No. 2. (18 October 2002), pp. 297-307.
    by Rachel Kolodny, Patrice Koehl, Leonidas Guibas, Michael Levitt
    posted to comparative_model protein_design protein_evolution protein_structure structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2005-09-07 17:59:27 as ***** along with 1 group structural_bioinformatics
  • Finding an average core structure: application to the globins.
    Proc Int Conf Intell Syst Mol Biol, Vol. 2 (1994), pp. 19-27.
    by RB Altman, M Gerstein
    posted to core_residues core_structure protein_structure structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2005-06-08 18:45:13 as read along with 1 group structural_bioinformatics
  • Approximate protein structural alignment in polynomial time.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12201-12206.
    by R Kolodny, N Linial
    posted to structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2005-05-31 20:50:35 as ***** along with 1 person and 1 group vavi structural_bioinformatics
  • Geometric Hashing: An Overview
    IEEE Computational Science and Engineering, Vol. 4 (1997), pp. 10-21.
    by H Wolfson, I Rigoutsos
    posted to bioinf_methods protein_structure structural_bioinformatics structure_comparison by barry to the group Bioinformatics on 2005-04-28 21:53:27 as ***** along with 1 person and 4 groups joergkurtwegner structural_bioinformatics Molecular-Modelling Drug-Design Cheminformatics
  • Structure-based systems biology: a zoom lens for the cell.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858.
    by P Aloy, RB Russell
    posted to bioinformatics gotit protein_protein review structural_bioinformatics systems_biology by barry to the group Bioinformatics on 2005-04-25 22:46:34 as ** along with 4 people and 1 group karbak lyongu biosv chad_davis structural_bioinformatics
  • Anchor residues in protein-protein interactions
    Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 101, No. 31. (03 August 2004), pp. 11287-11292.
    by Deepa Rajamani, Spencer Thiel, Sandor Vajda, Carlos J Camacho
    posted to gotit protein_protein structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 20:14:54 as *** along with 1 group structural_bioinformatics
  • A simple physical model for binding energy hot spots in protein-protein complexes
    Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121.
    by Tanja Kortemme, David Baker
    posted to bioinf_methods gotit protein_protein structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 20:11:47 as ***** along with 1 group structural_bioinformatics
  • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces
    Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777.
    by Buyong Ma, Tal Elkayam, Haim Wolfson, Ruth Nussinov
    posted to gotit protein_protein sequence_comparison structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 20:08:28 as ***** along with 1 group structural_bioinformatics
  • Dehydron: a structurally encoded signal for protein interaction
    Biophysical Journal, Vol. 85, No. 3. (September 2003), pp. 1914-1928.
    by Ariel Fernandez, Ridgway Scott
    posted to gotit protein_protein structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:52:37 as ***** along with 1 group structural_bioinformatics
  • Protein-Protein Interactions: Coupling of Structurally Conserved Residues and of Hot Spots across Interfaces. Implications for Docking
    Structure, Vol. 12, No. 6. (June 2004), pp. 1027-1038.
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to gotit protein_protein structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:51:11 as ** along with 2 people and 1 group bicko Evangelia structural_bioinformatics
  • Anatomy of hot spots in protein interfaces
    Journal of Molecular Biology, Vol. 280, No. 1. (03 July 1998), pp. 1-9.
    by Andrew A Bogan, Kurt S Thorn
    posted to gotit protein_protein structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:49:45 as ***** along with 3 people and 1 group csrocha bicko timg structural_bioinformatics
  • Dissecting protein-protein recognition sites
    Proteins, Vol. 47, No. 3. (15 May 2002), pp. 334-343.
    by Pinak Chakrabarti, Joel Janin
    posted to protein_protein protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:47:32 as ***** along with 1 person and 1 group selrac structural_bioinformatics
  • Identifying DNA-binding proteins using structural motifs and the electrostatic potential
    Nucleic Acids Research, Vol. 32, No. 16. (2004), pp. 4732-4741.
    by Hugh P Shanahan, Mario A Garcia, Susan Jones, Janet M Thornton
    posted to bioinf_methods protein_protein protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:42:27 as ** along with 1 group structural_bioinformatics
  • Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
    Protein Science: a Publication Of The Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202.
    by Daniel R Caffrey, Shyamal Somaroo, Jason D Hughes, Julian Mintseris, Enoch S Huang
    posted to bioinformatics protein_protein protein_sequence protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:38:42 as **** along with 1 person and 1 group wilbur structural_bioinformatics
  • An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures
    Journal of Molecular Biology, Vol. 326, No. 1. (07 February 2003), pp. 255-261.
    by Hui Yao, David M Kristensen, Ivana Mihalek, Mathew E Sowa, Chad Shaw, Marek Kimmel, Lydia Kavraki, Olivier Lichtarge
    posted to protein_protein protein_sequence protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:37:04 as ***** along with 1 person and 1 group BragilMassoud structural_bioinformatics
  • Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach.
    Proteins, Vol. 56, No. 2. (1 August 2004), pp. 322-337.
    by H Gohlke, LA Kuhn, DA Case
    posted to md_simulation protein_protein protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-03-16 03:52:20 as ***** along with 3 people and 1 group lna aqeel blackbart structural_bioinformatics
  • Simultaneous determination of protein structure and dynamics
    Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132.
    by Kresten Lindorff-Larsen, Robert B Best, Mark A Depristo, Christopher M Dobson, Michele Vendruscolo
    posted to md_simulation protein_dynamics protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-03-16 03:27:40 as ***** along with 12 people and 1 group karbak apaydin lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph structural_bioinformatics
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to protein_protein protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-03-16 03:24:16 as *** along with 6 people and 1 group mdimmic chad_davis choonpeng massivemayhem antonkratz kintoki structural_bioinformatics
  • How does a protein fold?
    Nature, Vol. 369, No. 6477. (19 May 1994), pp. 248-251.
    by A Sali, E Shakhnovich, M Karplus
    posted to fold_space protein_evolution protein_folding protein_sequence protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-03-16 03:16:39 as ***** along with 2 people and 1 group ucbcjbm evaf structural_bioinformatics
  • Conformational dynamics and enzyme activity
    Biochimie, Vol. 80, No. 1. (January 1998), pp. 33-42.
    by J Yon, D Perahia, C Ghelis
    posted to protein_dynamics protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-03-05 12:04:30 as ***** along with 1 person and 4 groups joergkurtwegner structural_bioinformatics Molecular-Modelling Drug-Design Cheminformatics
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