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Group: Bioinformatics - with tag bioinformatics [41 articles]

グループ Bioinformatics のメンバーが最近追加した論文の一覧 with tag bioinformatics
  • A new pheromone trail-based genetic algorithm for comparative genome assembly
    Nucl. Acids Res. (29 April 2008), gkn168.
    by Fangqing Zhao, Fanggeng Zhao, Tao Li, Donald A Bryant
    posted to genomics genome bioinformatics assembly by fqzhao to the group Bioinformatics on 2008-05-07 21:28:04 as read
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to bioinformatics pathway_analysis systems by xingxu to the group Bioinformatics on 2007-12-27 20:14:07 as ** along with 15 people and 2 groups AlexanderPico heliopais tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami shikin idonaldson Pao-Yang thomaskelder ParkinsonLab_at_MaRS OPIG
  • Quantification of ortholog losses in insects and vertebrates.
    Genome Biology, Vol. 8 (16 November 2007), R242.
    by Stefan Wyder, Evgenia V Kriventseva, Reinhard Schroder, Tatsuhiko Kadowaki, Evgeny M Zdobnov
    posted to 2007 bioinformatics comparative_genomics evolution insect ortholog vertebrate by hpaces to the group Bioinformatics on 2007-11-20 08:02:23 as ** along with 3 people and 1 group cjeans hlapp svdate ParkinsonLab_at_MaRS
  • A Computational Approach to the Functional Screening of Genomes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e174.
    by Davide Chiarugi, Pierpaolo Degano, Roberto Marangoni
    posted to 2007 bioinformatics comparative_genomics computational genomics by hpaces to the group Bioinformatics on 2007-11-03 18:41:55 as *** along with 3 people cjeans zwang ale
  • Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e181.
    by Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Cenk S Sahinalp, Evan E Eichler
    posted to 2007 bioinformatics evolution genome genomics by hpaces to the group Bioinformatics on 2007-11-03 18:38:16 as ** along with 1 person zwang
  • On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees
    Genome Biology, Vol. 8, No. 10. (2007)
    by Tomas M Bonet, Jesus S Ruiz, Lluis Armengol, Razi Khaja, Jaume Bertranpetit, Mariano Rocchi, Elodie Gazave, Nuria L Bigas, Arcadi Navarro
    posted to bioinformatics chimp comparative_genomics human by hpaces to the group Bioinformatics on 2007-10-31 06:56:39 as **** along with 2 people djkt maximilianh
  • Having a BLAST with bioinformatics (and avoiding BLASTphemy).
    Genome Biol, Vol. 2, No. 10. (2001)
    by A Pertsemlidis, JW Fondon
    posted to bioinformatics genomics by shantanu to the group Bioinformatics on 2007-10-18 17:42:00 as ** along with 8 people and 1 group karbak ziquje prtmht textoris cjeans sujaikumar scottstensland hpaces MathBio
  • Knowledge-based prediction of DNA atomic structure from nucleic sequence.
    Genome Inform, Vol. 16, No. 2. (2005), pp. 12-21.
    by MJ Araúzo-Bravo, A Sarai
    posted to bioinformatics dna dna_structure by shantanu to the group Bioinformatics on 2007-10-18 17:40:37 as ** along with 1 person and 1 group echcram structural_bioinformatics
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to tom networks bioinformatics by neveaire to the group Bioinformatics on 2007-09-18 01:07:47 as ** along with 14 people and 8 groups ellakat iris_2001 shivaram alexg yish wnpx ddahlem bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina Biostatistics Computational-Genomics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • Current progress in bioinformatics 2007.
    Brief Bioinform (27 August 2007)
    by Russ B B Altman
    posted to bioinformatics by sleepingcell to the group Bioinformatics on 2007-08-30 09:48:20 as ***** along with 1 person grahamc
  • Key biology databases go wiki
    Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691.
    by Jim Giles
    posted to wiki database collaborate bioinformatics by kehan to the group Bioinformatics on 2007-07-19 11:49:56 as read along with 9 people and 5 groups jyuh marcius eweaver raiyar grahamc leechuck PunkRock barriot mircea biodiversity_conservation BioinfoCIPF SGU-CIPF steinmetzlab GrassBase
  • Bioclipse: An open source workbench for chemo- and bioinformatics
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Ola Spjuth, Tobias Helmus, Egon Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter M Rust, Christoph Steinbeck, Jarl Wikberg
    posted to bioinformatics eclipse java obf by kehan to the group Bioinformatics on 2007-03-20 16:35:00 as read along with 9 people and 2 groups alanrw jyuh nicklynch eweaver moborg dullhunk fisherp egonw sci91078 biodiversity_conservation GrassBase
  • Haplotype Block Structure and Its Applications to Association Studies: Power and Study Designs
    posted to bioinformatics genetics by neveaire to the group Bioinformatics on 2007-03-16 22:41:50 as ** along with 3 groups Biostatistics Computational-Genomics Neuroscience
  • L2L: a simple tool for discovering the hidden significance in microarray expression data
    Genome Biology, Vol. 6, No. 9. (2005)
    by John Newman, Alan Weiner
    posted to microarray bioinformatics by neveaire to the group Bioinformatics on 2007-02-05 21:06:27 as ** along with 1 person and 3 groups chenlc03 Biostatistics Computational-Genomics Neuroscience
  • L2L: a simple tool for discovering the hidden significance in microarray expression data
    Genome Biology
    by John
    posted to bioinformatics by neveaire to the group Bioinformatics on 2007-01-27 04:53:14 as ** along with 1 person and 3 groups hohkhkh1 Biostatistics Computational-Genomics Neuroscience
  • Electronic Field Guides and User Communities in the Ecoinformatics Revolution
    Conservation Ecology, Vol. 7, No. 1. (2003), 3.
    by RD Stevenson, William A Haber, Robert A Morris
    posted to biodiversityinformatics bioinformatics biology birding citizen ecoinformatics field guides identification keys science species taxonomic taxonomy by kehan to the group Bioinformatics on 2007-01-05 11:11:38 as ** along with 2 groups biodiversity_conservation GrassBase
  • Structured motifs search.
    J Comput Biol, Vol. 12, No. 8. (October 2005), pp. 1065-1082.
    by M Morgante, A Policriti, N Vitacolonna, A Zuccolo
    posted to algorithm bioinformatics motif search sequence structure by bsmagic to the group Bioinformatics on 2006-07-28 06:15:19 as ** along with 1 person and 1 group yoanjacquemin bioinplant
  • Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 989-996.
    by H Li, J Li, L Wong
    posted to algorithm bioinformatics interaction motif prediction proteome sequence site structure by bsmagic to the group Bioinformatics on 2006-07-28 06:12:01 as ** along with 1 group bioinplant
  • Approximate matching of structured motifs in DNA sequences.
    J Bioinform Comput Biol, Vol. 3, No. 2. (April 2005), pp. 317-342.
    by N El-Mabrouk, M Raffinot, JE Duchesne, M Lajoie, N Luc
    posted to algorithm alignment bioinformatics dna motif search sequence structure by bsmagic to the group Bioinformatics on 2006-07-28 06:08:08 as ** along with 1 group bioinplant
  • The statistical significance of nucleotide position-weight matrix matches
    Comput. Appl. Biosci., Vol. 12, No. 5. (1 October 1996), pp. 431-439.
    by Jean-Michel Claverie, Stephane Audic
    posted to algorithm bioinformatics matrix statistics by bsmagic to the group Bioinformatics on 2006-07-21 08:29:08 as ** along with 2 people and 1 group neils samal bioinplant
  • Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13526-13531.
    by Y Xing, C Lee
    posted to alternative bioinformatics evolution pressure protein selection splicing by bsmagic to the group Bioinformatics on 2006-07-21 08:05:55 as ** along with 3 people and 2 groups aprasad radek penka Nie bioinplant
  • Statistical signals in bioinformatics.
    Proc Natl Acad Sci U S A (12 September 2005)
    by Samuel Karlin
    posted to algorithm analysis bioinformatics review sequence statistics by bsmagic to the group Bioinformatics on 2006-07-21 08:04:09 as *** along with 5 people and 1 group aaronsmith quianominorleo ardalby aalibes Ayest bioinplant
  • Fine mapping in tomato using microsynteny with the Arabidopsis genome: the Diageotropica (Dgt) locus.
    Genome Biol, Vol. 3, No. 9. (28 August 2002)
    by K Oh, K Hardeman, MG Ivanchenko, M Ellard-Ivey, A Nebenführ, TJ White, TL Lomax
    posted to bioinformatics comparative genomics mapping microsynteny plant synteny by bsmagic to the group Bioinformatics on 2006-07-20 14:06:48 as ** along with 1 group bioinplant
  • Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs
    Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 703-710.
    by H Zheng, Lu Fu, Wang Zhen-Yuan, Hoover Jeffrey, Mural Richard
    posted to bioinformatics genomics ortholog synteny by bsmagic to the group Bioinformatics on 2006-07-20 13:30:12 as ** along with 2 people and 2 groups cerca indigoviolet EisenLab bioinplant
  • sgTarget: a target selection resource for structural genomics.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by AP Rodrigues, BJ Grant, RE Hubbard
    posted to web_server target_selection structural_genomics mine bioinformatics by ana to the group Bioinformatics on 2006-07-19 05:55:02 as read along with 1 person and 1 group barry structural_bioinformatics
  • New trends in bioinformatics: from genome sequence to personalized medicine.
    Exp Gerontol, Vol. 38, No. 10. (October 2003), pp. 1031-1036.
    by R Molidor, A Sturn, M Maurer, Z Trajanoski
    posted to bioinformatics trends by bsmagic to the group Bioinformatics on 2006-07-16 12:14:01 as ** along with 1 group bioinplant
  • An algorithm for detecting homologues of known structured RNAs in genomes.
    Proc IEEE Comput Syst Bioinform Conf (2004), pp. 300-310.
    by SY Le, JV Maizel, K Zhang
    posted to algorithm bioinformatics homology rna search structure by bsmagic to the group Bioinformatics on 2006-07-12 14:02:31 as ** along with 2 people and 3 groups marcius arcticrasta BioinfoCIPF bioinplant SGU-CIPF
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
    posted to bioinformatics homology search sequence tool by bsmagic to the group Bioinformatics on 2006-07-12 14:00:19 as ** along with 8 people and 1 group Ema arcticrasta ffranca gurkanbebek CitoJam lusk cjeans sujaikumar bioinplant
  • A Semantic Web Primer
    Computer Journal, Vol. 48, No. 1., 126.
    by Vladimir Geroimenko
    posted to bioinformatics msc semantic web20 by kehan to the group Bioinformatics on 2006-03-29 18:28:31 as *** along with 1 person and 4 groups wcrosbie biodiversity_conservation Wikipedia CoP_CMS GrassBase
  • Accomplishments and challenges in literature data mining for biology.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561.
    by L Hirschman, JC Park, J Tsujii, L Wong, CH Wu
    posted to bib bio bioinformatics literature-mining msc nlp onto pubmed-mining review text-mining txtmining by kehan to the group Bioinformatics on 2006-03-23 15:46:21 as ***** along with 7 people and 5 groups satre irenas Enro yas benny caporaso vlachmore dbk-lab biodiversity_conservation T_lab biomedical-nlp GrassBase
  • Bioinformatics: Sequence and Genome Analysis
    (30 September 2004)
    by David W Mount
    posted to bioinformatics book by ana to the group Bioinformatics on 2006-02-23 22:37:56 as *** along with 4 people and 1 group ep161302 aalibes jofiel mijam structural_bioinformatics
  • Bioinformatics -- Table of Contents (21 [10])
    posted to bioinformatics strutural by sangeetha to the group Bioinformatics on 2006-02-02 12:37:36 as ** along with 1 group insilicodrug
  • A method for including protein flexibility in protein-ligand docking: improving tools for database mining and virtual screening
    Journal of Molecular Graphics and Modelling, Vol. 18, No. 3. (June 2000), pp. 247-257.
    by Howard B Broughton
    posted to bioinformatics general test by barry to the group Bioinformatics on 2005-12-16 16:17:25 as * along with 1 group structural_bioinformatics
  • Identification of functionally conserved residues with the use of entropy-variability plots.
    Proteins, Vol. 52, No. 4. (1 September 2003), pp. 544-552.
    by L Oliveira, PB Paiva, AC Paiva, G Vriend
    posted to bioinformatics protein_design protein_sequence sequence_comparison by barry to the group Bioinformatics on 2005-08-01 22:41:32 as ** along with 1 group structural_bioinformatics
  • Structure-based systems biology: a zoom lens for the cell.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858.
    by P Aloy, RB Russell
    posted to bioinformatics gotit protein_protein review structural_bioinformatics systems_biology by barry to the group Bioinformatics on 2005-04-25 22:46:34 as ** along with 4 people and 1 group chad_davis karbak lyongu biosv structural_bioinformatics
  • Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
    Protein Science: a Publication Of The Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202.
    by Daniel R Caffrey, Shyamal Somaroo, Jason D Hughes, Julian Mintseris, Enoch S Huang
    posted to bioinformatics protein_protein protein_sequence protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-04-14 19:38:42 as **** along with 1 person and 1 group wilbur structural_bioinformatics
  • Bioinformatics: Sequence, Structure and Databanks: A Practical Approach
    (15 October 2000)
    by Des Higgins
    posted to bioinformatics book by ana to the group Bioinformatics on 2005-03-11 05:46:31 as read along with 1 person and 1 group barry structural_bioinformatics
  • Establishing homologies in protein sequences.
    Methods Enzymol, Vol. 91 (1983), pp. 524-545.
    by MO Dayhoff, WC Barker, LT Hunt
    posted to bioinformatics protein_sequence sequence_alignment sequence_comparison by ana to the group Bioinformatics on 2005-03-08 06:45:51 as *** along with 1 person and 1 group ca3295 structural_bioinformatics
  • Introduction to Bioinformatics
    (01 May 2002)
    by Arthur M Lesk
    posted to bioinformatics book by ana to the group Bioinformatics on 2005-03-03 20:00:19 as ** along with 1 group structural_bioinformatics
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to bioinformatics by barry to the group Bioinformatics on 2005-03-03 19:26:28 as *** along with 13 people and 4 groups pradiptaray karbak ujh alexisgallagher bpb aprasad balicea dchughes djkt sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Making decisions for structural genomics.
    Brief Bioinform, Vol. 4, No. 2. (June 2003), pp. 150-167.
    by A Rodrigues, RE Hubbard
    posted to web_server target_selection structural_genomics mine bioinformatics by ana to the group Bioinformatics on 2005-03-02 22:31:47 as read along with 1 group structural_bioinformatics
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