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Group: Bioinformatics - with tag animals [129 articles]

グループ Bioinformatics のメンバーが最近追加した論文の一覧 with tag animals
  • Genomic surgery for lung cancer.
    J Surg Res, Vol. 117, No. 1. (2004), pp. 107-13.
    by DS Schrump
    posted to genome-chromatin use therapygeneticstherapy regulation peptides neoplasticdrug neoplasmsdrug methylation lung humans histone genetic gene expression engineeringmethods effects dna disassemblydrug derivativespharmacologytherapeutic depsipeptides deacetylases cyclicpharmacologytherapeutic chromatin azacitidineanalogs assembly antineoplastic animals and agentspharmacologytherapeutic by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as **** along with 1 group ProkaryoteInterestGroup
  • In vivo analysis of the model tyrosine aminotransferase gene reveals multiple sequential steps in glucocorticoid receptor action.
    Oncogene, Vol. 20, No. 24. (2001), pp. 3028-38.
    by T Grange, L Cappabianca, M Flavin, H Sassi, H Thomassin
    posted to genome-chromatin tyrosine transaminasegeneticsmetabolism trans-activation support research receptors non-us models humans govt glucocorticoidphysiology genetics chromatingeneticsmetabolism biological animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as **** along with 1 group ProkaryoteInterestGroup
  • [How the methyl-CpG binding protein-related epigenetic disease turns on the genes that produce its symptoms]
    Tanpakushitsu Kakusan Koso, Vol. 50, No. 8. (2005), pp. 978-84.
    by S Horike
    posted to genome-chromatin transcription syndromegenetics rett repressor proteinsgenetics proteins protein non-histonegenetics mutation methyl-cpg-binding imprintinggenetics humans homeodomain histones genomic female factors dna-binding disassemblygenetics chromosomal chromatingenetics chromatin assembly animals and 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:47 as **** along with 1 group ProkaryoteInterestGroup
  • Genomic DNA methylation: the mark and its mediators.
    Trends Biochem Sci, Vol. 31, No. 2. (2006), pp. 89-97.
    by RJ Klose, AP Bird
    posted to genome-chromatin transcription syndromephysiopathology support silencingphysiology rett research regulation proteinsmetabolismphysiology protein non-us neoplasmsgenetics methylationdrug methyl-cpg-binding islandsphysiology intestinal humans govt geneticphysiology geneticdrug gene factorsphysiology expression epigenesis effectsphysiology effects dna-binding dna cytosine-5--methyltransferasemetabolism cpg animals 2genetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as **** along with 1 group ProkaryoteInterestGroup
  • Cooperative interactions between epigenetic modifications and their function in the regulation of chromosome architecture.
    Bioessays, Vol. 25, No. 8. (2003), pp. 792-7.
    by F Weissmann, F Lyko
    posted to genome-chromatin support research non-us models methylation humans govt genetic epigenesis dna chromosomesgenetics animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as **** along with 1 group ProkaryoteInterestGroup
  • Chromatin organization during spermiogenesis in Octopus vulgaris. I: Morphological structures.
    Mol Reprod Dev, Vol. 68, No. 2. (2004), pp. 223-31.
    by E Ribes, Gimenez P Bonafe, Martinez F Soler, A Gonzalez, N Saperas, HE Kasinsky, M Chiva
    posted to genome-chromatin support spermatogenesisphysiology research octopodiformesphysiology nuclear non-us matrixmetabolism male govt disassemblyphysiology chromatinphysiology chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:45 as **** along with 1 group ProkaryoteInterestGroup
  • The marks, mechanisms and memory of epigenetic states in mammals.
    Biochem J, Vol. 356, No. Pt 1. (2001), pp. 1-10.
    by VK Rakyan, J Preis, HD Morgan, E Whitelaw
    posted to methylation mammalsgenetics intercellular imprinting govt genomic genetic gene expression dosage dna compensation chromatinmetabolism animals and genome-chromatin support signaling research repressor regulation proteins peptides non-us models mice by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:44 as **** along with 1 group ProkaryoteInterestGroup
  • Nucleosome assembly protein-1 is a linker histone chaperone in Xenopus eggs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 23. (2005), pp. 8210-5.
    by K Shintomi, M Iwabuchi, H Saeki, K Ura, T Kishimoto, K Ohsumi
    posted to govt female extracts disassembly data cycle chromatin chaperonesmetabolism cell assembly animals and amino acid genome-chromatin xenopusmetabolism support spermatozoametabolism sequence research proteinsgeneticsmetabolism proteins oocytesmetabolism nucleosomeschemistrymetabolism nuclear non-us molecular male histonesmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as **** along with 1 group ProkaryoteInterestGroup
  • Silencing of transposable elements in plants.
    Trends Plant Sci, Vol. 6, No. 11. (2001), pp. 527-34.
    by H Okamoto, H Hirochika
    posted to genome-chromatin transposable transcription support silencing rna research regulation processing post-transcriptional plantsgenetics plant non-us mammalsgenetics govt genetic gene expression elementsgenetics elegansgeneticsmetabolism drosophilagenetics dna deletion caenorhabditis arabidopsisgeneticsmetabolism animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as **** along with 1 group ProkaryoteInterestGroup
  • The radioresistance kinase TLK1B protects the cells by promoting repair of double strand breaks.
    BMC Mol Biol, Vol. 6 (2005)
    by Sunavala G Dossabhoy, SK Balakrishnan, S Sen, S Nuthalapaty, A De Benedetti
    posted to genome-chromatin transfection tolerance support research repair radiation protein-serine-threonine plasmids phosphorylation non-us line kinasesgeneticsphysiology ionizing humans histonesmetabolism govt dna disassembly damage chromatin cell assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as **** along with 1 group ProkaryoteInterestGroup
  • Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis.
    Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5.
    by F Magdinier, SG D'Estaing, C Peinado, B Demirci, C Berthet, JF Guerin, R Dante
    posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as **** along with 1 group ProkaryoteInterestGroup
  • Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes.
    Methods, Vol. 33, No. 1. (2004), pp. 81-5.
    by N Fujita, PA Wade
    posted to genome-chromatin regions reagents promoter mappingmethods humans genomicsmethods genetics disassemblygeneticsphysiology cultured cross-linking chromosome chromatingeneticsphysiology chromatin cells assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as **** along with 1 group ProkaryoteInterestGroup
  • [Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?]
    Tanpakushitsu Kakusan Koso, Vol. 49, No. 16. (2004), pp. 2521-8.
    by A Kanai
    posted to genome-chromatin untranslatedclassificationgeneticsphysiology transcription sequence rna reading open messenger imprintinggenetics humans genomic geneticgenetics genetic frames dosage dna disassemblygenetics computational complementary compensation chromatin biology assembly antisense animals and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:36 as **** along with 1 group ProkaryoteInterestGroup
  • Poly(ADP-ribosyl)ated chromatin domains: access granted.
    J Cell Sci, Vol. 117, No. Pt 6. (2004), pp. 815-25.
    by M Rouleau, RA Aubin, GG Poirier
    posted to genome-chromatin transcription support ribosemetabolism research proteins polymerases polyadp-ribose poly nucleusmetabolism nucleic non-us non-histonemetabolism nadmetabolism humans histonesmetabolism govt genetic dnametabolism disassemblyphysiology diphosphate conformation chromosomesmetabolism chromosomal chromatinmetabolism chromatin cell assembly apoptosisphysiology animals and adenosine acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:35 as **** along with 1 group ProkaryoteInterestGroup
  • Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins.
    J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35.
    by T Ichimura, S Watanabe, Y Sakamoto, T Aoto, N Fujita, M Nakao
    posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as **** along with 1 group ProkaryoteInterestGroup
  • DNA methylation in animal development.
    Semin Cell Dev Biol, Vol. 14, No. 1. (2003), pp. 53-65.
    by RR Meehan
    posted to genome-chromatin support research regulation proteinsphysiology non-us modification methylation methylasesgenetics imprinting govt genomic gene expression dna-binding dna developmentalgenetics chromatinmetabolismphysiology animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as **** along with 1 group ProkaryoteInterestGroup
  • ATP-dependent chromatin-remodeling complexes in DNA double-strand break repair: remodeling, pairing and (re)pairing.
    Cell Cycle, Vol. 4, No. 12. (2005), pp. 1713-5.
    by J Huang, B Liang, J Qiu, BC Laurent
    posted to genome-chromatin triphosphatemetabolism support research repair pairing nih multiprotein extramural dna disassembly damage complexesmetabolism chromosome chromatingeneticsmetabolism chromatin assembly animals and adenosinetriphosphatasemetabolism adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as **** along with 1 group ProkaryoteInterestGroup
  • Transition nuclear proteins are required for normal chromatin condensation and functional sperm development.
    Genesis, Vol. 38, No. 4. (2004), pp. 200-13.
    by M Zhao, CR Shirley, S Hayashi, L Marcon, B Mohapatra, R Suganuma, RR Behringer, G Boissonneault, R Yanagimachi, ML Meistrich
    posted to genome fluorescence disassembly developmentmetabolismpathology chromosomal chromatingeneticsmetabolism chromatin assembly animals and agingphysiology genome-chromatin us support spermatozoacytologygrowth spermatogenesis research proteins protaminesmetabolism phs non-us non-histonedeficiencygeneticsmetabolism mutationgenetics microscopy mice malegeneticspathology male knockout infertility histonesmetabolism govt by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:29 as **** along with 1 group ProkaryoteInterestGroup
  • H2AX: tailoring histone H2A for chromatin-dependent genomic integrity.
    Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15.
    by A Li, Eirin JM Lopez, J Ausio
    posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as **** along with 1 group ProkaryoteInterestGroup
  • Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila.
    Methods Mol Biol, Vol. 287 (2004), pp. 151-68.
    by MD Garfinkel, VE Sollars, X Lu, DM Ruden
    posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as **** along with 1 group ProkaryoteInterestGroup
  • FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation.
    Nat Neurosci, Vol. 7, No. 3. (2004), pp. 229-35.
    by MR Song, A Ghosh
    posted to genome-chromatin us transductiondrug transcription trans-activatorsdrug support stem stat1 signal research regulation regions rats proteinsdrug proteindrug promoter phs non-us neurotrophic methylationdrug lysinemetabolism histonesdrug growth govt glial geneticsdrug gene fibroblast fibrillary fetus factorsdrug factormetabolismpharmacology factor expression effectsmetabolism effectsgeneticsmetabolism effectsgenetics effects dna-binding disassemblydrug differentiationdrug developmentaldrug cultured cortexcytologyembryologymetabolism ciliary chromatin cerebral cellscytologydrug cells cell astrocytescytologydrug assembly animals and acidic 2metabolismpharmacology by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:24 as **** along with 1 group ProkaryoteInterestGroup
  • ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin.
    J Cell Biochem, Vol. 91, No. 6. (2004), pp. 1087-98.
    by S Sif
    posted to non-us neoplasmsmetabolism humans govt geneticphysiology gene expression drosophila dnametabolism divisionphysiology disassemblyphysiology chromatin cerevisiae cell assembly animals and adenosine genome-chromatin us triphosphatemetabolism transcription support saccharomyces research regulation proteinsmetabolism phs nucleosomesmetabolism nuclear by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:23 as **** along with 1 group ProkaryoteInterestGroup
  • Identification of SATB2 as the cleft palate gene on 2q32-q33.
    Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501.
    by DR Fitzpatrick, IM Carr, L Mclaren, JP Leek, P Wightman, K Williamson, P Gautier, N Mcgill, C Hayward, H Firth, AF Markham, JA Fantes, DT Bonthron
    posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as **** along with 1 group ProkaryoteInterestGroup
  • The role of mammalian DNA methyltransferases in the regulation of gene expression.
    Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47.
    by Turek J Plewa, PP Jagodzinski
    posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as **** along with 1 group ProkaryoteInterestGroup
  • Chromatin remodeling and the maintenance of genome integrity.
    Biochim Biophys Acta, Vol. 1677, No. 1-3. (2004), pp. 158-64.
    by S Allard, JY Masson, J Cote
    posted to genome-chromatin variation u1 triphosphatemetabolism support substances small rna-binding ribonucleoprotein research repairgenetics proteins nucleargeneticsmetabolism non-us macromolecular humans histonesgeneticsmetabolism histone govt genome genetics drosophila dna disassembly chromatin assembly animals and adenosine acetyltransferasesgeneticsmetabolism acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:12 as **** along with 1 group ProkaryoteInterestGroup
  • Gene identification in novel eukaryotic genomes by self-training algorithm
    Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506.
    by A Lomsadze, Ter V Hovhannisyan, YO Chernoff, M Borodovsky
    posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • A non-EST-based method for exon-skipping prediction
    Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623.
    by R Sorek, R Shemesh, Y Cohen, O Basechess, G Ast, R Shamir
    posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • Accurate identification of alternatively spliced exons using support vector machine
    Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901.
    by G Dror, R Sorek, R Shamir
    posted to 0900 20050713 algorithms alignmentmethods alternative analysis animals artificial automatedmethods chromosome comparative conserved dnamethods evolution exonsgenetics govt humans intelligence mappingmethods mice molecular non-us pattern recognition research sequence sequencegenetics software splicinggenetics study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300.
    by M Zavolan, S Kondo, C Schonbach, J Adachi, DA Hume, Y Hayashizaki, T Gaasterland
    posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Computational analysis of full-length mouse cDNAs compared with human genome sequences
    Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677.
    by S Kondo, A Shinagawa, T Saito, H Kiyosawa, I Yamanaka, K Aizawa, S Fukuda, A Hara, M Itoh, J Kawai, K Shibata, Y Hayashizaki
    posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes
    RNA, Vol. 10, No. 7. (Jul 2004), pp. 1005-1018.
    by H Itoh, T Washio, M Tomita
    posted to 0500 20040824 acid alternative animals base complementarygenetics conserved data dna drosophila evolution exonsgenetics govt humans intronsgenetics melanogastergenetics mice molecular non-us nucleic oryza regulatory research sativagenetics sequence sequences species specificity splicinggenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as **
  • Genome-wide assembly and analysis of alternative transcripts in mouse
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754.
    by AA Sharov, DB Dudekula, MS Ko
    posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as **
  • C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
    Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41.
    by J Reboul, P Vaglio, JF Rual, P Lamesch, M Martinez, CM Armstrong, S Li, L Jacotot, N Bertin, R Janky, T Moore, Hudson, JL Hartley, MA Brasch, J Vandenhaute, S Boulton, GA Endress, S Jenna, E Chevet, V Papasotiropoulos, PP Tolias, J Ptacek, M Snyder, R Huang, MR Chance, H Lee, Doucette L Stamm, DE Hill, M Vidal
    posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as **
  • Alternative splicing and genome complexity
    Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 29-30.
    by D Brett, H Pospisil, J Valcarcel, J Reich, P Bork
    posted to 1001 20020205 alternative animals cattle expressed geneticsgenetics genome humans messengergenetics mice rats rna sequence splicing tags variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Alternative splicing of conserved exons is frequently species-specific in human and mouse
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77.
    by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe
    posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Alternative splicing, the gene concept, and evolution
    Hist Philos Life Sci, Vol. 26, No. 1. (2004)
    by SM Downes
    posted to 0900 20050511 alternative animals biology concept evolution formation genes genome human humans molecular philosophy splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as **
  • The transcriptional activity of human Chromosome 22
    Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540.
    by JL Rinn, G Euskirchen, P Bertone, R Martone, NM Luscombe, S Hartman, PM Harrison, FK Nelson, P Miller, M Gerstein, S Weissman, M Snyder
    posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as **
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.
    by JM Johnson, S Edwards, D