新規登録 | ログイン | FAQ      [?] 
Recent | Recommended | Search | Authors | Tags | Export

Group: EisenLab - with tag motif [26 articles]

グループ EisenLab のメンバーが最近追加した論文の一覧 with tag motif
  • Levers and fulcrums: progress in cis-regulatory motif models
    Nature Methods, Vol. 5, No. 4., pp. 297-298.
    by Ewan Birney
    posted to cis-regulatory comparative_genomics methods motif prediction by stajich to the group EisenLab on 2008-04-07 16:11:40 as ** along with 3 people and 1 group isimpson pradiptaray emptyhb Berkeley Mycology
  • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to algorithm motif by indigoviolet to the group EisenLab on 2007-12-12 14:01:38 as ** along with 4 people chad_davis tuck dquest lusk
  • A computational genomics approach to the identification of gene networks
    Nucl. Acids Res., Vol. 25, No. 18. (15 September 1997), pp. 3594-3604.
    by A Wagner
    posted to motif by indigoviolet to the group EisenLab on 2007-12-12 11:05:07 as **
  • A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
    Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739.
    by BT Naughton, E Fratkin, S Batzoglou, DL Brutlag
    posted to motif by indigoviolet to the group EisenLab on 2007-12-12 11:00:03 as ** along with 3 people xili03 nklee yevishere
  • Methods and statistics for combining motif match scores.
    J Comput Biol, Vol. 5, No. 2. (1998), pp. 211-221.
    by TL Bailey, M Gribskov
    posted to motif by indigoviolet to the group EisenLab on 2007-12-12 10:56:53 as **
  • JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
    posted to database motif by indigoviolet to the group EisenLab on 2007-12-12 09:14:43 as ** along with 4 people and 1 group aalibes jguinney nklee heliopais Motif Discovery
  • MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    BMC Bioinformatics, Vol. 6 (2005)
    by VD Marinescu, IS Kohane, A Riva
    posted to algorithm motif by indigoviolet to the group EisenLab on 2007-12-12 05:44:21 as ** along with 1 person ihpark
  • Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    Nature Methods, Vol. 4, No. 7. (24 June 2007), pp. 563-565.
    by Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt
    posted to motif discovery chip-chip by brant to the group EisenLab on 2007-07-16 22:00:13 as *** along with 3 people zwang maximilianh fpattyn
  • Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90.
    by Timothy E Reddy, Charles Delisi, Boris E Shakhnovich
    posted to yeast venky_presented round_robin motif method eisen_journal_club binding_site ab_initio by dpollard to the group EisenLab on 2007-06-14 23:38:43 as ** along with 5 people aalibes medic0747 GustavoLacerda mircea marti
  • Determination of local statistical significance of patterns in Markov sequences with application to promoter element identification.
    J Comput Biol, Vol. 11, No. 1. (2004), pp. 1-14.
    by H Huang, MC Kao, X Zhou, JS Liu, WH Wong
    posted to stuart_presented round_robin motif method markov eisen_journal_club binding_site ab_initio by dpollard to the group EisenLab on 2007-06-04 22:47:45 as * along with 1 person jguinney
  • STAMP: a web tool for exploring DNA-binding motif similarities.
    Nucleic Acids Res (3 May 2007)
    by Shaun Mahony, Panayiotis V V Benos
    posted to website pwm motif method alignment by dpollard to the group EisenLab on 2007-05-23 00:40:45 as *
  • A phylogenetic Gibbs sampler that yields centroid solutions for cis regulatory site prediction.
    Bioinformatics (8 May 2007)
    by Lee A A Newberg, William A A Thompson, Sean Conlan, Thomas M M Smith, Lee Ann A McCue, Charles E E Lawrence
    posted to prediction motif method discovery clustering cis_regulatory_elements by dpollard to the group EisenLab on 2007-05-23 00:29:25 as ** along with 2 people sconlan cjeans
  • Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase.
    Genome Biology, Vol. 8 (22 February 2007), R23.
    by Alan M Moses, Jean-Karim Heriche, Richard Durbin
    posted to protein motif clustering by dpollard to the group EisenLab on 2007-03-27 16:28:13 as ** along with 1 person gjuggler
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
    posted to round_robin pwm prediction motif eisen_journal_club dan_presented chip_chip by dpollard to the group EisenLab on 2007-03-23 00:19:21 as *** along with 3 people chad_davis dquest yevishere
  • Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both.
    Curr Opin Genet Dev, Vol. 15, No. 4. (August 2005), pp. 395-402.
    by T Vavouri, G Elgar
    posted to binding_site cis_regulatory_elements method motif pattern prediction pwm regulatory_sequence by dpollard to the group EisenLab on 2007-03-15 00:24:34 as *** along with 6 people and 1 group brant troels_marstrand kaspermunch adepace lusk Stew Bioinformatics
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to motif micro_array gene expression correlation by dpollard to the group EisenLab on 2007-01-19 16:12:50 as * along with 4 people jyuh gpalidwor wnpx SeungjoonOh
  • Identification of degenerate motifs using position restricted selection and hybrid ranking combination.
    Nucleic Acids Res, Vol. 34, No. 22. (2006), pp. 6379-6391.
    by CH Peng, JT Hsu, YS Chung, YJ Lin, WY Chow, DF Hsu, CY Tang
    posted to motif detection by dpollard to the group EisenLab on 2007-01-19 16:08:24 as *
  • Large Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 December 2006), e7.eor.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to drosophila eisen_journal_club emily_presented motif prediction promoter round_robin by dpollard to the group EisenLab on 2006-12-13 22:18:54 as ****
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1445-1453.
    by Thomas A Down, Tim J Hubbard
    posted to dan_presented discovery eisen_journal_club motif round_robin by dpollard to the group EisenLab on 2006-12-13 22:14:20 as read along with 3 people waszak lyongu dquest
  • Single-Molecule Detection of Transcription Factor Binding to DNA in Real Time: Specificity, Equilibrium, and Kinetic Parameters.
    Biochemistry, Vol. 45, No. 46. (21 November 2006), pp. 13794-13806.
    by Eric A Nalefski, Eugene Nebelitsky, Janice A Lloyd, Steven R Gullans
    posted to binding kenetics method motif by dpollard to the group EisenLab on 2006-11-17 13:00:37 as **
  • Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.
    Mol Biol Evol, Vol. 15, No. 7. (July 1998), pp. 910-917.
    by AL Halpern, WJ Bruno
    posted to constraint evolution model motif mutation phylogeny selection by dpollard to the group EisenLab on 2006-11-07 00:11:19 as read along with 1 person lusk
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as read
  • Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs.
    Gene (5 June 2006)
    by Jun-Ichi I Hikima, Mara L L Lennard, Melanie R R Wilson, Norman W W Miller, Gregory W W Warr
    posted to binding grammar motif promoter spacing transcription by dpollard to the group EisenLab on 2006-06-16 20:44:19 as **
  • Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945.
    by S Gunewardena, P Jeavons, Z Zhang
    posted to binding motif prediction structure transcription by dpollard to the group EisenLab on 2006-06-16 20:40:23 as ** along with 2 people samal nklee
  • Evaluating phylogenetic footprinting for human-rodent comparisons.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by T Sauer, E Shelest, E Wingender
    posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard to the group EisenLab on 2006-05-01 22:45:46 as **
  • A survey of motif discovery methods in an integrated framework
    Biology Direct, Vol. 1, No. 1. (06 April 2006), 11.
    by Geir K Sandve, Finn Drabløs
    posted to discovery motif review by dpollard to the group EisenLab on 2006-04-08 23:19:50 as ** along with 5 people idonaldson aprasad samal yevishere csdhwang
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/group/652/tag/motif

    RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.