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Group: Berkeley Mycology - with tag evolution [36 articles]

グループ Berkeley Mycology のメンバーが最近追加した論文の一覧 with tag evolution
  • Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution.
    Trends in genetics : TIG (9 September 2008)
    by Tanya Vavouri, Jennifer I I Semple, Ben Lehner
    posted to genome_evolution gene_duplication evolution duplication by stajich to the group Berkeley Mycology on 2008-10-01 22:20:17 as **
  • Gene Expansion and Retention Leads to a Diverse Tyrosine Kinase Superfamily in Amphioxus
    Mol Biol Evol, Vol. 25, No. 9. (1 September 2008), pp. 1841-1854.
    by Salvatore D'Aniello, Manuel Irimia, Ignacio Maeso, Juan Pascual-Anaya, Senda Jimenez-Delgado, Stephanie Bertrand, Jordi Garcia-Fernandez
    posted to animal chordate evolution expansion gene_family metazoa by stajich to the group Berkeley Mycology on 2008-08-17 19:30:18 as **
  • EVOLUTION: Modernizing the Modern Synthesis
    Science, Vol. 321, No. 5886. (11 July 2008), pp. 196-197.
    by Elizabeth Pennisi
    posted to evolution evolutionary_theory modernsynthesis by stajich to the group Berkeley Mycology on 2008-07-25 06:44:15 as ** along with 2 people renatomilani bpcusack
  • Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes.
    FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 511-519.
    by B Ramírez-Zavala, A Domínguez
    posted to evolution fungi phylogenetics saccharomyces by stajich to the group Berkeley Mycology on 2008-07-21 04:13:26 as **
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to binding_site drosophila even-skipped evodevo evolution promotor transcription_factor by stajich to the group Berkeley Mycology on 2008-06-28 18:16:38 as ** along with 7 people and 1 group maximilianh Stew emptyhb djkt pradiptaray cisevol caseybrown cis-regulatory-evolution
  • Tinker where the tinkering's good.
    Trends in genetics : TIG (29 May 2008)
    by Matthew V V Rockman, David L L Stern
    posted to cis-regulatory drosophila evodevo evolution by stajich to the group Berkeley Mycology on 2008-06-22 20:12:47 as ** along with 1 person Stew
  • Alternative splicing: A missing piece in the puzzle of intron gain.
    Proceedings of the National Academy of Sciences of the United States of America (7 May 2008)
    by Rosa Tarrío, Francisco J J Ayala, Francisco Rodríguez-Trelles
    posted to evolution intron_evolution intron_gain intron_loss intron_sliding by stajich to the group Berkeley Mycology on 2008-06-20 18:00:42 as ** along with 3 people imtechnology clearbluespring bootsy
  • An Improved General Amino Acid Replacement Matrix
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320.
    by Si Q Le, Olivier Gascuel
    posted to bioinformatics evolution methods molecular_evolution phylogenetics protein_evolution by stajich to the group Berkeley Mycology on 2008-06-14 07:08:01 as ** along with 2 people friendpine dmp
  • The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain.
    Development genes and evolution, Vol. 218, No. 1. (January 2008), pp. 23-32.
    by M Gauthier, BM Degnan
    posted to development evolution metazoa multicellular by stajich to the group Berkeley Mycology on 2008-06-09 00:54:16 as **
  • Genome Analysis of the Unicellular Green Alga Chlamydomonas reinhardtii Indicates an Ancient Evolutionary Origin for Key Pattern Recognition and Cell-Signaling Protein Families
    Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197.
    by Glen L Wheeler, Diego Miranda-Saavedra, Geoffrey J Barton
    posted to chlamydomonas evolution gene_family genome genome_evolution signaling by stajich to the group Berkeley Mycology on 2008-05-26 16:51:35 as ** along with 1 person cmzmasek
  • Complete mitochondrial genome sequence of the wine yeast Candida zemplinina: intraspecies distribution of a novel group-IIB1 intron with eubacterial affiliations.
    FEMS yeast research, Vol. 8, No. 2. (March 2008), pp. 311-327.
    by PV Pramateftaki, VN Kouvelis, P Lanaridis, MA Typas
    posted to candida evolution intron yeast by stajich to the group Berkeley Mycology on 2008-05-11 23:44:29 as **
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
    posted to evolution fungi ribosomes transcription_factor by stajich to the group Berkeley Mycology on 2008-05-05 02:58:14 as ** along with 1 person zwang
  • Rapid large-scale evolutionary divergence in morphology and performance associated with exploitation of a different dietary resource.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4792-4795.
    by A Herrel, K Huyghe, B Vanhooydonck, T Backeljau, K Breugelmans, I Grbac, R Van Damme, DJ Irschick
    posted to evolution by stajich to the group Berkeley Mycology on 2008-05-02 02:05:55 as ** along with 3 people and 1 group jbyoder operon iBartomeus macroevolution
  • Discovering microRNAs from deep sequencing data using miRDeep
    Nature Biotechnology, Vol. 26, No. 4., pp. 407-415.
    by Marc R Friedländer, Wei Chen, Catherine Adamidi, Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky
    posted to evolution methods mirna smallrna by stajich to the group Berkeley Mycology on 2008-04-25 23:40:15 as ** along with 6 people and 2 groups tharris tmmurali giovanni jfr heliopais gdb C. elegans / WormBase microRNA
  • Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 929-938.
    by Jian Lu, Yonggui Fu, Supriya Kumar, Yang Shen, Kai Zeng, Anlong Xu, Richard Carthew, Chung-I Wu
    posted to drosophila evolution mirna smallrna by stajich to the group Berkeley Mycology on 2008-04-25 23:38:18 as ** along with 1 person lp2
  • The birth and death of microRNA genes in Drosophila.
    Nat Genet (17 February 2008)
    by Jian Lu, Yang Shen, Qingfa Wu, Supriya Kumar, Bin He, Suhua Shi, Richard W W Carthew, San Ming M Wang, Chung-I I Wu
    posted to drosophila evolution methods mirna smallrna by stajich to the group Berkeley Mycology on 2008-04-25 23:38:05 as ** along with 5 people djkt bootsy emptyhb cellison megraw
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to divergent_genes evolution fungi transcription by stajich to the group Berkeley Mycology on 2008-04-25 23:37:16 as ** along with 1 person nklee
  • DNA from herbarium specimens settles a controversy about origins of the European potato
    Am. J. Bot., Vol. 95, No. 2. (1 February 2008), pp. 252-257.
    by Mercedes Ames, David M Spooner
    posted to evolution herbarium hybridization plant by stajich to the group Berkeley Mycology on 2008-04-24 18:28:18 as **
  • Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?
    Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. In Press, Uncorrected Proof
    by Michael J Axtell
    posted to evolution mirna smallrna by stajich to the group Berkeley Mycology on 2008-04-23 20:09:56 as ** along with 3 people eckart_bindewald maralena tolot27
  • The Evolutionary Trajectory of the Mating-Type (mat) Genes in Neurospora Relates to Reproductive Behavior of Taxa
    BMC Evolutionary Biology, Vol. 8 (11 April 2008), 109.
    by Lotta Wik, Magnus Karlsson, Hanna Johannesson
    posted to evolution mating_genes mating_type neurospora_tetrasperma by stajich to the group Berkeley Mycology on 2008-04-15 06:19:44 as **
  • The "Alternative" Choice of Constitutive Exons throughout Evolution.
    PLoS Genet, Vol. 3, No. 11. (16 November 2007)
    by Galit Lev-Maor, Amir Goren, Noa Sela, Eddo Kim, Hadas Keren, Adi Doron-Faigenboim, Shelly Leibman-Barak, Tal Pupko, Gil Ast
    posted to alternative_splicing evolution splicing by stajich to the group Berkeley Mycology on 2008-04-10 22:24:26 as ** along with 2 people sebastien_vigneau bpcusack
  • The Evolution of Combinatorial Gene Regulation in Fungi
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e38.
    by Brian B Tuch, David J Galgoczy, Aaron D Hernday, Hao Li, Alexander D Johnson
    posted to evolution fungi gene_expression regulation by stajich to the group Berkeley Mycology on 2008-04-01 06:43:06 as ** along with 2 people biomcgary cmzmasek
  • The evolution of core proteins involved in microRNA biogenesis
    BMC Evolutionary Biology, Vol. 8 (25 March 2008), 92.
    by Dennis Murphy, Barry Dancis, James R Brown
    posted to biogenesis evolution mirna rnai rna_silencing by stajich to the group Berkeley Mycology on 2008-04-01 06:21:18 as ** along with 1 person vinithepooh
  • Structure and duplication of the centrosome
    J Cell Sci, Vol. 120, No. 13. (1 July 2007), pp. 2139-2142.
    by Juliette Azimzadeh, Michel Bornens
    posted to centrosome evolution fungi metazoa by stajich to the group Berkeley Mycology on 2008-03-05 17:59:15 as **
  • A phylogenomic investigation into the origin of Metazoa
    Mol Biol Evol (9 January 2008), msn006.
    by Inaki Ruiz-Trillo, Andrew J Roger, Gertraud Burger, Michael W Gray, Franz B Lang
    posted to evodevo evolution metazoa metazoan methods multicellular phylogenomics by stajich to the group Berkeley Mycology on 2008-03-05 17:54:57 as ** along with 2 people cmzmasek renatomilani
  • Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota).
    Mycol Res, Vol. 111, No. Pt 9. (September 2007), pp. 1133-1141.
    by HT Lumbsch, I Schmitt, A Mangold, M Wedin
    posted to evolution fungi homoplasy phylogenetics by stajich to the group Berkeley Mycology on 2008-03-03 22:15:30 as **
  • Algae as Tools for Cellulose Research
    (1990), pp. 20-39.
    by Malcolm R Brown
    edited by W Wiessner, DG Robinson, RC Starr
    posted to cellulose_synthase evolution oomycete by stajich to the group Berkeley Mycology on 2008-02-04 05:26:17 as **
  • Evolution of a family of metazoan active-site-serine enzymes from penicillin-binding proteins: a novel facet of the bacterial legacy
    BMC Evolutionary Biology, Vol. 8, No. 1. (2008)
    by Nina Peitsaro, Zydrune Polianskyte, Jarno Tuimala, Isabella P Ares, Julius Liobikas, Oliver Speer, Dan Lindholm, James Thompson, Ove Eriksson
    posted to enzyme evolution metazoan protein_evolution by stajich to the group Berkeley Mycology on 2008-01-29 16:41:38 as **
  • Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
    BMC Genomics, Vol. 9 (23 January 2008), 31.
    by Tae-Sung Kim, James G Booth, Hugh G Gauch, Qi Sun, Jongsun Park, Yong-Hwan Lee, Kwangwon Lee
    posted to evolution neurospora repeats by stajich to the group Berkeley Mycology on 2008-01-27 20:24:18 as **
  • Conserved processes and lineage-specific proteins in fungal cell wall evolution.
    Eukaryot Cell, Vol. 6, No. 12. (December 2007), pp. 2269-2277.
    by JE Coronado, S Mneimneh, SL Epstein, WG Qiu, PN Lipke
    posted to cell_surface cell_wall evolution fungal by stajich to the group Berkeley Mycology on 2008-01-25 15:14:09 as **
  • Broadly sampled multigene trees of eukaryotes
    BMC Evolutionary Biology, Vol. 8 (18 January 2008), 14.
    by Hwan S Yoon, Jessica Grant, Yonas I Tekle, Min Wu, Benjamin C Chaon, Jeffrey C Cole, John M Logsdon, David J Patterson, Debashish Bhattacharya, Laura A Katz
    posted to eukarytoa evolution phylogeny by stajich to the group Berkeley Mycology on 2008-01-22 03:57:33 as ** along with 1 person mblwhoi
  • Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA
    Nature, Vol. 451, No. 7174. (3 January 2008), pp. 94-97.
    by Paul J Paukstelis, Jui-Hui Chen, Elaine Chase, Alan M Lambowitz, Barbara L Golden
    posted to evolution interaction neurospora rna structure world by sharpton to the group Berkeley Mycology on 2008-01-03 16:54:42 as *** along with 1 person stajich
  • Profiling Phylogenetic Informativeness
    Systematic Biology, Vol. 56, No. 2. (2007), pp. 222-231.
    by Jeffrey P Townsend
    posted to evolution phylogenetic_marker_selection phylogenetics phylogenomics by stajich to the group Berkeley Mycology on 2007-12-06 22:46:05 as ** along with 3 people and 1 group aprasad rvosa Jporci FAB-lab
  • Incipient speciation by divergent adaptation and antagonistic epistasis in yeast
    Nature, Vol. 447, No. 7144., pp. 585-588.
    by Jeremy R Dettman, Caroline Sirjusingh, Linda M Kohn, James B Anderson
    posted to antagonistic epistasis evolution neurospora speciation by stajich to the group Berkeley Mycology on 2007-12-04 18:14:45 as ** along with 3 people and 2 groups stevanspringer cjeans biomcgary FAB-lab Marcotte_Lab
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to evolution gene phylogenomics synteny yeast by stajich to the group Berkeley Mycology on 2007-12-04 18:11:33 as ** along with 13 people and 3 groups aheilbut dpollard tny dchughes djkt zwang biomcgary lp2 tzhughes maximilianh pkm bpcusack dandaman EisenLab G4ID Genetics-of-Gambling
  • Automatic genome-wide reconstruction of phylogenetic gene trees.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to evolution genome phylogenetics synteny yeast by stajich to the group Berkeley Mycology on 2007-12-04 18:10:14 as ** along with 3 people shigepong seitentaisei tharris
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