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Group: cis-regulatory-evolution - with tag transposon [44 articles]

グループ cis-regulatory-evolution のメンバーが最近追加した論文の一覧 with tag transposon
  • A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity.
    Genome research (7 August 2008)
    by Aileen M M Smith, Maria-Jose J Sanchez, George A A Follows, Sarah Kinston, Ian J J Donaldson, Anthony R R Green, Berthold Göttgens
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-08-11 19:51:00 as ** along with 1 group BergmanLab
  • Retroviral promoters in the human genome
    Bioinformatics, Vol. 24, No. 14. (15 July 2008), pp. 1563-1567.
    by Andrew B Conley, Jittima Piriyapongsa, King I Jordan
    posted to mammals promoter transposon by cisevol to the group cis-regulatory-evolution on 2008-07-10 13:36:29 as ** along with 2 people and 1 group idonaldson maximilianh BergmanLab
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-05-29 22:08:58 as ** along with 2 people and 1 group pradiptaray bryankr BergmanLab
  • Evolutionary origin of regulatory regions of retrogenes in Drosophila
    BMC Genomics, Vol. 9 (22 May 2008), 241.
    by Yongsheng Bai, Claudio Casola, Esther Betran
    posted to cis-regulatory duplication flies transposon by cisevol to the group cis-regulatory-evolution on 2008-05-25 09:18:47 as **
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-05-16 15:21:47 as ** along with 1 person and 3 groups dchughes G4ID Genetics-of-Gambling BergmanLab
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-04-26 19:38:10 as ** along with 1 person and 1 group FMoncini BergmanLab
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mammals mirna transposon by cisevol to the group cis-regulatory-evolution on 2008-02-05 21:22:12 as ** along with 6 people and 4 groups gpappas tardigrade andersbj dchughes mtagaya emptyhb microRNA G4ID Genetics-of-Gambling BergmanLab
  • Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
    Proc Natl Acad Sci U S A (25 January 2008)
    by Angel Carlos C Roman, Dixan A A Benitez, Jose M M Carvajal-Gonzalez, Pedro M M Fernandez-Salguero
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-02-05 21:18:50 as ** along with 1 person and 1 group maximilianh BergmanLab
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to cis-regulatory mammals microarray transposon by cisevol to the group cis-regulatory-evolution on 2008-02-04 22:40:36 as ** along with 4 people and 1 group djkt biomcgary bpcusack dchughes BergmanLab
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-01-20 22:36:40 as ** along with 6 people and 1 group gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin BergmanLab
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-12-22 13:26:58 as ** along with 2 people and 1 group blobbybirdman idonaldson BergmanLab
  • A transposable element inserted just 5' to a Drosophila glue protein gene alters gene expression and chromatin structure.
    Cell, Vol. 34, No. 1. (August 1983), pp. 75-84.
    by W McGinnis, AW Shermoen, SK Beckendorf
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-12-01 16:48:38 as ** along with 1 group BergmanLab
  • Conserved eukaryotic transposable elements and the evolution of gene regulation.
    Cell Mol Life Sci (20 November 2007)
    by J Jurka
    posted to cis-regulatory mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-11-22 15:36:44 as ** along with 5 people and 1 group gpappas dchughes Stew maximilianh idonaldson BergmanLab
  • Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e10.
    by Mark T Romanish, Wynne M Lock, Louie N de Lagemaat, Catherine A Dunn, Dixie L Mager
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-11-01 10:55:08 as ** along with 3 people and 3 groups dchughes Fei yoanjacquemin G4ID Genetics-of-Gambling BergmanLab
  • Functional noncoding sequences derived from SINEs in the mammalian genome.
    Genome Res (22 May 2006)
    by Hidenori Nishihara, Arian F A F Smit, Norihiro Okada
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:47:38 as ** along with 3 people and 2 groups dchughes mtagaya FMoncini G4ID Genetics-of-Gambling
  • A family of conserved noncoding elements derived from an ancient transposable element
    PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11659-11664.
    by Xiaohui Xie, Michael Kamal, Eric S Lander
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:46:41 as ** along with 2 people and 3 groups dchughes cmm FAB-lab G4ID Genetics-of-Gambling
  • A large family of ancient repeat elements in the human genome is under strong selection
    PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745.
    by Michael Kamal, Xiaohui Xie, Eric S Lander
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:45:59 as ** along with 4 people and 1 group aprasad balicea cmm gjuggler FAB-lab
  • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 8005-8010.
    by Craig B Lowe, Gill Bejerano, David Haussler
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 15:55:20 as ** along with 3 people bpb pradiptaray FMoncini
  • Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene.
    PLoS Genet, Vol. 3, No. 10. (5 October 2007)
    by Andrea M M Santangelo, Flávio S J S de Souza, Lucía F F Franchini, Viviana F F Bumaschny, Malcolm J J Low, Marcelo Rubinstein
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-26 22:11:35 as ** along with 2 people and 1 group gpappas dchughes BergmanLab
  • Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster.
    Genetics, Vol. 173, No. 2. (June 2006), pp. 809-820.
    by VY Shilova, DG Garbuz, EN Myasyankina, B Chen, MB Evgen'ev, ME Feder, OG Zatsepina
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-25 11:56:50 as ** along with 1 person and 1 group pradiptaray BergmanLab
  • Effect of Divergence Time and Recombination Rate on Molecular Evolution of Drosophila INE-1 Transposable Elements and Other Candidates for Neutrally Evolving Sites.
    J Mol Evol (25 September 2007)
    by Jun Wang, Peter D Keightley, Daniel L Halligan
    posted to flies noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-24 10:11:34 as **
  • Evolution of a polymorphic regulatory element in interferon-gamma through transposition and mutation.
    Mol Biol Evol, Vol. 19, No. 6. (June 2002), pp. 884-890.
    by H Ackerman, I Udalova, J Hull, D Kwiatkowski
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:11:38 as ** along with 1 person olympos
  • The intracisternal A particle derived solo LTR promoter of the rat oncomodulin gene is not present in the mouse gene.
    Genetica, Vol. 86, No. 1-3. (1992), pp. 85-97.
    by D Banville, M Rotaru, Y Boie
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:10:47 as **
  • Cases of ancient mobile element DNA insertions that now affect gene regulation.
    Mol Phylogenet Evol, Vol. 5, No. 1. (February 1996), pp. 13-17.
    by RJ Britten
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:28 as **
  • Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication.
    Nucleic Acids Res, Vol. 34, No. 14. (2006), pp. 3862-3877.
    by R Johnson, RJ Gamblin, L Ooi, AW Bruce, IJ Donaldson, DR Westhead, IC Wood, RM Jackson, NJ Buckley
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:54:58 as ** along with 2 people and 1 group idonaldson RaquelSL BergmanLab
  • Origin of a substantial fraction of human regulatory sequences from transposable elements.
    Trends Genet, Vol. 19, No. 2. (February 2003), pp. 68-72.
    by IK Jordan, IB Rogozin, GV Glazko, EV Koonin
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:54:53 as ** along with 2 people ushishir olympos
  • Transposable elements as a significant source of transcription regulating signals.
    Gene, Vol. 365 (3 January 2006), pp. 104-110.
    by BG Thornburg, V Gotea, W Makałowski
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:53:43 as ** along with 2 people Waylander timflutre
  • Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 776-783.
    by DN Lerman, ME Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:51:20 as **
  • Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements.
    Mol Biol Evol, Vol. 20, No. 1. (January 2003), pp. 135-144.
    by DN Lerman, P Michalak, AB Helin, BR Bettencourt, ME Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:50:17 as **
  • Amylase gene structures in primates: retroposon insertions and promoter evolution.
    Mol Biol Evol, Vol. 13, No. 6. (July 1996), pp. 767-779.
    by LC Samuelson, RS Phillips, LJ Swanberg
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:41:55 as **
  • Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution.
    Mol Cell Biol, Vol. 10, No. 6. (June 1990), pp. 2513-2520.
    by LC Samuelson, K Wiebauer, CM Snow, MH Meisler
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:41:36 as **
  • Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements.
    BMC Evol Biol, Vol. 4, No. 1. (4 October 2004)
    by R Shankar, D Grover, SK Brahmachari, M Mukerji
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:41:05 as **
  • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 530-536.
    by LN van de Lagemaat, JR Landry, DL Mager, P Medstrand
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:37:27 as ** along with 2 people ushishir yoanjacquemin
  • Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene.
    Genes Dev, Vol. 6, No. 8. (August 1992), pp. 1457-1465.
    by CN Ting, MP Rosenberg, CM Snow, LC Samuelson, MH Meisler
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:37:06 as ** along with 1 person yoanjacquemin
  • A distal enhancer and an ultraconserved exon are derived from a novel retroposon
    Nature (16 April 2006)
    by Gill Bejerano, Craig B Lowe, Nadav Ahituv, Bryan King, Adam Siepel, Sofie R Salama, Edward M Rubin, James W Kent, David Haussler
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:33:15 as ** along with 6 people and 5 groups marcius dchughes nickluscombe djkt gjuggler carlfulp G4ID EBI-regulation BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element.
    Proc Natl Acad Sci U S A, Vol. 92, No. 18. (29 August 1995), pp. 8229-8233.
    by G Vansant, WF Reynolds
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:29:11 as **
  • Heat-Shock Promoters: Targets for Evolution by P Transposable Elements in Drosophila.
    PLoS Genet, Vol. 2, No. 10. (6 October 2006)
    by Jean-Claude C Walser, Bing Chen, Martin E E Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:28:43 as ** along with 1 person and 2 groups dpollard EisenLab BergmanLab
  • A novel Pax-6 binding site in rodent B1 repetitive elements: coevolution between developmental regulation and repeated elements?
    Gene, Vol. 245, No. 2. (21 March 2000), pp. 319-328.
    by Y Zhou, JB Zheng, X Gu, W Li, GF Saunders
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:27:11 as **
  • Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation.
    Genome Res, Vol. 12, No. 11. (November 2002), pp. 1716-1722.
    by YH Zhou, JB Zheng, X Gu, GF Saunders, WK Yung
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:26:44 as **
  • Computational and biological inference of gene regulatory networks of the LINE-1 retrotransposon.
    Genomics, Vol. 90, No. 2. (August 2007), pp. 176-185.
    by KS Ramos, Q He, T Kalbfleisch, DE Montoya-Durango, I Teneng, V Stribinskis, M Brun
    posted to cis-regulatory transposon by cisevol to the group cis-regulatory-evolution on 2007-10-19 23:19:40 as ** along with 1 group BergmanLab
  • Cis-Regulatory Elements in the Accord Retrotransposon Result in Tissue-Specific Expression of the Drosophila melanogaster Insecticide Resistance Gene Cyp6g1
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1071-1077.
    by Henry Chung, Michael R Bogwitz, Caroline Mccart, Alex Andrianopoulos, Richard H Ffrench-Constant, Philip Batterham, Phillip J Daborn
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-18 09:00:08 as ** along with 1 person and 1 group dpollard EisenLab
  • An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon.
    Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12841-12846.
    by CA Dunn, P Medstrand, DL Mager
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-18 08:07:02 as ** along with 2 people ushishir yoanjacquemin
  • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans.
    J Biol Chem, Vol. 276, No. 3. (19 January 2001), pp. 1896-1903.
    by P Medstrand, JR Landry, DL Mager
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-18 08:04:04 as ** along with 2 people ushishir yoanjacquemin
  • Transposable element derived DNaseI-hypersensitive sites in the human genome
    Biology Direct, Vol. 1 (20 July 2006), 20.
    by Leonardo Mariño-Ramírez, King I Jordan
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-18 07:46:48 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/group/3260/tag/transposon

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