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Group: cis-regulatory-evolution - with tag flies [73 articles]

グループ cis-regulatory-evolution のメンバーが最近追加した論文の一覧 with tag flies
  • Elevated levels of expression associated with regions of the Drosophila genome that lack crossing over.
    Biology letters (9 September 2008)
    by Penelope R R Haddrill, Fergal M M Waldron, Brian Charlesworth
    posted to recombination flies expression by cisevol to the group cis-regulatory-evolution on 2008-09-17 10:35:58 as **
  • Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression.
    Proceedings of the National Academy of Sciences of the United States of America (12 September 2008)
    by Bernardo Lemos, Luciana O O Araripe, Pierre Fontanillas, Daniel L L Hartl
    posted to microarray flies expression cis_vs_trans by cisevol to the group cis-regulatory-evolution on 2008-09-17 10:32:31 as ** along with 3 people stevanspringer sebastien_vigneau bpcusack
  • Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Genome Biology, Vol. 9, No. 8. (2008)
    by Mara Lawniczak, Alisha Holloway, David Begun, Corbin Jones
    posted to cis-regulatory flies microarray variation by cisevol to the group cis-regulatory-evolution on 2008-08-17 23:46:39 as ** along with 3 people APRegier caseybrown djkt
  • Gene expression variation in African and European populations of Drosophila melanogaster
    Genome Biology, Vol. 9 (21 January 2008), R12.
    by Stephan Hutter, Sarah S Saminadin-Peter, Wolfgang Stephan, John Parsch
    posted to expression flies variation by cisevol to the group cis-regulatory-evolution on 2008-07-23 13:26:05 as ** along with 2 people caseybrown sb_journal_club
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Res. (26 June 2008), gr.077131.108.
    by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2008-07-10 13:36:09 as ** along with 3 people and 1 group alhufton maximilianh bpcusack BergmanLab
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2008-06-30 21:50:06 as ** along with 7 people and 1 group maximilianh Stew emptyhb djkt stajich pradiptaray caseybrown Berkeley Mycology
  • Evolutionary changes in gene regulation from a comparative analysis of multiple Drosophila species.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 12-21.
    by L Hu, D Segrè, TF Smith
    posted to cis-regulatory flies rearrangement by cisevol to the group cis-regulatory-evolution on 2008-06-12 21:57:48 as ** along with 1 person pradiptaray
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to cis-regulatory flies model by cisevol to the group cis-regulatory-evolution on 2008-06-07 21:39:11 as ** along with 3 people djkt Stew Ema
  • Evolutionary origin of regulatory regions of retrogenes in Drosophila
    BMC Genomics, Vol. 9 (22 May 2008), 241.
    by Yongsheng Bai, Claudio Casola, Esther Betran
    posted to cis-regulatory duplication flies transposon by cisevol to the group cis-regulatory-evolution on 2008-05-25 09:18:47 as **
  • Microevolutionary divergence pattern of the segmentation gene hunchback in Drosophila.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1403-1411.
    by D Tautz, L Nigro
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2008-05-23 19:03:28 as ** along with 2 people balicea emptyhb
  • A comparison of homologous developmental genes from Drosophila and Tribolium reveals major differences in length and trinucleotide repeat content.
    Journal of molecular evolution, Vol. 49, No. 5. (November 1999), pp. 558-566.
    by KJ Schmid, D Tautz
    posted to beetles flies insects transcription_factor by cisevol to the group cis-regulatory-evolution on 2008-05-22 14:22:20 as **
  • A test for adaptive change in DNA sequences controlling transcription.
    Proceedings. Biological sciences / The Royal Society, Vol. 261, No. 1361. (22 August 1995), pp. 203-207.
    by DL Jenkins, CA Ortori, JF Brookfield
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2008-05-22 14:18:25 as **
  • Studying the functional conservation of cis-regulatory modules and their transcriptional output
    BMC Bioinformatics, Vol. 9 (29 April 2008), 220.
    by Denis C Bauer, Timothy L Bailey
    posted to cis-regulatory flies model by cisevol to the group cis-regulatory-evolution on 2008-04-30 19:02:30 as ** along with 2 people maximilianh xili03
  • The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 783-793.
    by S Jeong, M Rebeiz, P Andolfatto, T Werner, J True, SB Carroll
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2008-03-11 21:52:21 as ** along with 1 person Stew
  • Computational discovery of cis-regulatory modules in Drosophila, without prior knowledge of motifs
    Genome Biology, Vol. 9, No. 1. (2008)
    by Andra Ivan, Marc Halfon, Saurabh Sinha
    posted to cis-regulatory flies model by cisevol to the group cis-regulatory-evolution on 2008-01-30 14:21:24 as ** along with 2 people maximilianh csdhwang
  • Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome
    BMC Evolutionary Biology, Vol. 8 (07 January 2008), 2.
    by Jason G Mezey, Sergey V Nuzhdin, Fangfei Ye, Corbin D Jones
    posted to cis-regulatory flies microarray by cisevol to the group cis-regulatory-evolution on 2008-01-09 21:40:08 as **
  • Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by S Aerts, J van Helden, O Sand, BA Hassan
    posted to cis-regulatory flies model by maximilianh to the group cis-regulatory-evolution on 2007-12-08 15:34:13 as ** along with 4 people brant idonaldson barwil isimpson
  • Dynamic control of positional information in the early Drosophila embryo.
    Nature, Vol. 430, No. 6997. (15 July 2004), pp. 368-371.
    by J Jaeger, S Surkova, M Blagov, H Janssens, D Kosman, KN Kozlov, Manu, E Myasnikova, CE Vanario-Alonso, M Samsonova, DH Sharp, J Reinitz
    posted to flies transcription by blobbybirdman to the group cis-regulatory-evolution on 2007-12-07 17:51:13 as **** along with 1 person and 2 groups wrowell Cline_lab UH - Computational Biology
  • Regulation of Body Pigmentation by the Abdominal-B Hox Protein and Its Gain and Loss in Drosophila Evolution
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1387-1399.
    by Sangyun Jeong, Antonis Rokas, Sean B Carroll
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-12-05 22:44:47 as read along with 1 person and 1 group emilyhare EisenLab
  • A transposable element inserted just 5' to a Drosophila glue protein gene alters gene expression and chromatin structure.
    Cell, Vol. 34, No. 1. (August 1983), pp. 75-84.
    by W McGinnis, AW Shermoen, SK Beckendorf
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-12-01 16:48:38 as ** along with 1 group BergmanLab
  • Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus.
    Evol Dev, Vol. 6, No. 5. (t 2004), pp. 325-335.
    by J Costas, PS Pereira, CP Vieira, S Pinho, J Vieira, F Casares
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-11-21 01:23:45 as read along with 1 group EisenLab
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to cis-regulatory flies model by dpollard to the group cis-regulatory-evolution on 2007-11-17 00:01:35 as *** along with 7 people and 1 group lp2 nklee maximilianh roys caseybrown emptyhb barwil EisenLab
  • Constraint and turnover in sex-biased gene expression in the genus Drosophila
    Nature, Vol. 450, No. 7167., pp. 233-237.
    by Yu Zhang, David Sturgill, Michael Parisi, Sudhir Kumar, Brian Oliver
    posted to cis-regulatory flies microarray by dpollard to the group cis-regulatory-evolution on 2007-11-16 23:49:54 as read along with 1 person and 1 group indigoviolet EisenLab
  • Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae.
    Development, Vol. 134, No. 13. (July 2007), pp. 2415-2424.
    by Y Goltsev, N Fuse, M Frasch, RP Zinzen, G Lanzaro, M Levine
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-11-05 22:47:23 as ** along with 1 group EisenLab
  • Evolution of the ventral midline in insect embryos.
    Dev Cell, Vol. 11, No. 6. (December 2006), pp. 895-902.
    by RP Zinzen, J Cande, M Ronshaugen, D Papatsenko, M Levine
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-11-05 22:36:33 as ** along with 1 person and 1 group KingLab EisenLab
  • Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster.
    Genetics, Vol. 173, No. 2. (June 2006), pp. 809-820.
    by VY Shilova, DG Garbuz, EN Myasyankina, B Chen, MB Evgen'ev, ME Feder, OG Zatsepina
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-25 11:56:50 as ** along with 1 person and 1 group pradiptaray BergmanLab
  • Effect of Divergence Time and Recombination Rate on Molecular Evolution of Drosophila INE-1 Transposable Elements and Other Candidates for Neutrally Evolving Sites.
    J Mol Evol (25 September 2007)
    by Jun Wang, Peter D Keightley, Daniel L Halligan
    posted to flies noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-24 10:11:34 as **
  • The regulatory content of intergenic DNA shapes genome architecture.
    Genome Biol, Vol. 5, No. 4. (2004)
    by CE Nelson, BM Hersh, SB Carroll
    posted to cis-regulatory flies noncoding worms by cisevol to the group cis-regulatory-evolution on 2007-10-24 10:08:04 as ** along with 5 people and 3 groups tharris dpollard madhadron elzodw blobbybirdman C. elegans / WormBase EisenLab BergmanLab
  • Evolution of heterochromatic genes of Drosophila.
    Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 10958-10963.
    by JC Yasuhara, CH DeCrease, BT Wakimoto
    posted to cis-regulatory flies heterochromatin by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:15:08 as ** along with 2 people and 2 groups operon dchughes G4ID Genetics-of-Gambling
  • Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila.
    Mol Biol Evol (23 July 2007)
    by Sònia Casillas, Antonio Barbadilla, Casey M M Bergman
    posted to flies noncoding variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:12:36 as ** along with 7 people and 1 group operon dpollard emilyhare Garamonfok Stew emptyhb brant EisenLab
  • Adaptive evolution of non-coding DNA in Drosophila
    Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152.
    by Peter Andolfatto
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:11:58 as ** along with 12 people and 3 groups stevanspringer bpb aprasad jmeppley balicea jimmithy emilyhare cdawson adepace pradiptaray Stew mimulus_99 EisenLab FAB-lab GIG
  • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345.
    by CM Bergman, M Kreitman
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:52 as ** along with 4 people and 1 group penka adijr hugoparker brant Nie
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:47 as ** along with 4 people and 1 group indigoviolet dpollard nklee brant EisenLab
  • Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Genome Biol, Vol. 5, No. 9. (2004)
    by BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, SE Celniker
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:41 as ** along with 7 people and 2 groups mbeisen indigoviolet adepace Stew nklee maximilianh Auger EisenLab Dead 60's
  • Comparison of bicoid-dependent regulation of hunchback between Musca domestica and Drosophila melanogaster.
    Mech Dev, Vol. 66, No. 1-2. (August 1997), pp. 143-156.
    by F Bonneton, PJ Shaw, C Fazakerley, M Shi, GA Dover
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:35 as **
  • Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism.
    BMC Genomics, Vol. 6 (2005)
    by RP Brown, ME Feder
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:16 as **
  • Turnover of binding sites for transcription factors involved in early Drosophila development.
    Gene, Vol. 310 (22 May 2003), pp. 215-220.
    by J Costas, F Casares, J Vieira
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:08:51 as ** along with 1 person and 1 group dpollard EisenLab
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:08:44 as ** along with 2 people emptyhb brant
  • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
    Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487.
    by N Gompel, B Prud'homme, PJ Wittkopp, VA Kassner, SB Carroll
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:06:17 as ** along with 5 people and 1 group dpollard emilyhare adepace emptyhb pradiptaray EisenLab
  • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content.
    Genome Biol, Vol. 6, No. 8. (2005)
    by PR Haddrill, B Charlesworth, DL Halligan, P Andolfatto
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:06:14 as ** along with 2 people and 1 group penka lilou Nie
  • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.
    Genome Res (2 June 2006)
    by Daniel L L Halligan, Peter D D Keightley
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:55:33 as ** along with 5 people and 2 groups RMGraze dpollard penka jri emptyhb EisenLab Nie
  • High sequence turnover in the regulatory regions of the developmental gene hunchback in insects.
    Mol Biol Evol, Vol. 16, No. 2. (February 1999), pp. 253-265.
    by JM Hancock, PJ Shaw, F Bonneton, GA Dover
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:55:28 as **
  • Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes.
    Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 374-383.
    by MH Kohn, S Fang, CI Wu
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:53:14 as ** along with 1 person and 1 group adepace EisenLab
  • Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 776-783.
    by DN Lerman, ME Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:51:20 as **
  • Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements.
    Mol Biol Evol, Vol. 20, No. 1. (January 2003), pp. 135-144.
    by DN Lerman, P Michalak, AB Helin, BR Bettencourt, ME Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:50:17 as **
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:49:02 as ** along with 3 people ranb emptyhb brant
  • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
    Mol Biol Evol, Vol. 12, No. 6. (November 1995), pp. 1002-1011.
    by MZ Ludwig, M Kreitman
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:48:56 as ** along with 1 person emptyhb
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:48:53 as ** along with 4 people and 2 groups mimulus_99 blobbybirdman brant emptyhb UH - Computational Biology Myxo group
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:48:45 as ** along with 3 people and 1 group adepace emptyhb brant EisenLab
  • Identifying signatures of selection at the enhancer of split neurogenic gene complex in Drosophila.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 607-619.
    by SJ Macdonald, AD Long
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:47:02 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/group/3260/tag/flies

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