新規登録 | ログイン | FAQ      [?] 
Recent | Recommended | Search | Authors | Tags | Export

Group: compneur - with tag simulation_algorithms [35 articles]

グループ compneur のメンバーが最近追加した論文の一覧 with tag simulation_algorithms
  • A New Algorithm for Monte Carlo Simulation of Ising Spin Systems
    Journal of Computational Physics, Vol. 17 (January 1975), 10.
    by AB Bortz, MH Kalos, JL Lebowitz
    posted to monte_carlo simulation_algorithms by dagmar to the group compneur on 2007-11-28 16:39:59 as **
  • Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems
    Biotechnol. Prog. (26 September 2007)
    by H Li, Y Cao, LR Petzold, DT Gillespie
    posted to simulation_algorithms stochastic by dagmar to the group compneur on 2007-11-26 17:02:53 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Family tree of Markov models in systems biology
    Systems Biology, IET, Vol. 1, No. 4. (2007), pp. 247-254.
    by M Ullah, O Wolkenhauer
    posted to simulation_algorithms by dagmar to the group compneur on 2007-11-26 16:57:49 as **
  • Some general implicit processes for the numerical solution of differential equations
    The Computer Journal, Vol. 5, No. 4. (1 April 1963), pp. 329-330.
    by HH Rosenbrock
    posted to deterministic kisao simulation_algorithms by dagmar to the group compneur on 2007-11-20 11:25:03 as **
  • An Automatic Method for Finding the Greatest or Least Value of a Function
    The Computer Journal, Vol. 3, No. 3. (1 March 1960), pp. 175-184.
    by HH Rosenbrock
    posted to deterministic kisao simulation_algorithms by dagmar to the group compneur on 2007-11-12 19:07:20 as **
  • Automatic Selection of Methods for Solving Stiff and Nonstiff Systems of Ordinary Differential Equations
    SIAM Journal on Scientific and Statistical Computing, Vol. 4, No. 1. (1983), pp. 136-148.
    by Linda Petzold
    posted to copasi kisao ode simulation_algorithms by dagmar to the group compneur on 2007-10-30 17:32:57 as ** along with 2 people muraken pmendes
  • Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.
    Phys Biol, Vol. 1, No. 3-4. (December 2004), pp. 137-151.
    by SS Andrews, D Bray
    posted to kisao simulation_algorithms smoldyn by dagmar to the group compneur on 2007-10-29 15:36:49 as ** along with 6 people and 2 groups roland_ewald csanford lenov m_j gabe_rosser arjunan dIEMoSIRIS MoSi-Rostock
  • PVODE, an ODE Solver for Parallel Computers
    International Journal of High Performance Computing Applications, Vol. 13, No. 4. (1 November 1999), pp. 354-365.
    by George D Byrne, Alan C Hindmarsh
    posted to deterministic simulation_algorithms by dagmar to the group compneur on 2007-10-28 19:52:02 as **
  • Stochastic reaction-diffusion simulation with MesoRD
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2923-2924.
    by Johan Hattne, David Fange, Johan Elf
    posted to simulation_algorithms simulation_tools stochastic by dagmar to the group compneur on 2007-10-26 17:27:43 as ** along with 8 people and 3 groups jberro balabu jiyu roland_ewald mattis23 lenov csanford arjunan Projet_ENSIMAG dIEMoSIRIS MoSi-Rostock
  • A practical guide to stochastic simulations of reaction-diffusion processes
    (15 Apr 2007)
    by Radek Erban, Jonathan Chapman, Philip Maini
    posted to simulation_algorithms stochastic by dagmar to the group compneur on 2007-10-26 16:16:44 as ***** along with 3 people and 2 groups cottrell roland_ewald csgillespie dIEMoSIRIS MoSi-Rostock
  • Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space.
    J Chem Phys, Vol. 123, No. 23. (15 December 2005)
    by JS van Zon, PR Ten Wolde
    posted to simulation_algorithms stochastic by dagmar to the group compneur on 2007-10-25 22:15:13 as ** along with 1 person madhadron
  • Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
    The Journal of Chemical Physics, Vol. 118, No. 11. (2003), pp. 4999-5010.
    by Christopher V Rao, Adam P Arkin
    posted to kisao simulation_algorithms by dagmar to the group compneur on 2007-10-23 15:06:12 as **
  • The numerical stability of leaping methods for stochastic simulation of chemically reacting systems.
    J Chem Phys, Vol. 121, No. 24. (22 December 2004), pp. 12169-12178.
    by Y Cao, LR Petzold, M Rathinam, DT Gillespie
    posted to kisao simulation_algorithms tau by dagmar to the group compneur on 2007-10-23 14:08:22 as **
  • Avoiding negative populations in explicit Poisson tau-leaping
    J. Chem. Phys., Vol. 123 (August 2005), 4104.
    by Y Cao, DT Gillespie, LR Petzold
    posted to gillespie kisao simulation_algorithms tau by dagmar to the group compneur on 2007-10-22 16:14:37 as **
  • Improved leap-size selection for accelerated stochastic simulation
    J. Chem. Phys., Vol. 119 (October 2003), pp. 8229-8234.
    by DT Gillespie, LR Petzold
    posted to gillespie simulation_algorithms tau by dagmar to the group compneur on 2007-10-19 14:44:44 as **
  • Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
    The Journal of Chemical Physics, Vol. 117, No. 15. (2002), pp. 6959-6969.
    by Eric L Haseltine, James B Rawlings
    posted to simulation_algorithms stochastic by dagmar to the group compneur on 2007-10-19 09:15:36 as ** along with 3 people jstajic jjray ner25
  • Modeling and simulation of genetic regulatory systems: a literature review.
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 67-103.
    by H de Jong
    posted to kisao modelling simulation_algorithms by dagmar to the group compneur on 2007-10-18 17:28:28 as ** along with 14 people and 2 groups eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe jo_davies roys maburkitt phoenixzxl VirtualPlants Plantandetc
  • Stochastic simulation of coupled reaction-diffusion processes
    J. Comput. Phys., Vol. 127, No. 1. (August 1996), pp. 196-207.
    by Audrius B Stundzia, Charles J Lumsden
    posted to simulation_algorithms stochastic by dagmar to the group compneur on 2007-10-18 14:14:01 as ** along with 1 person and 1 group jberro Projet_ENSIMAG
  • Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1895-1901.
    by Vidal J Rodriguez, Jaap A Kaandorp, Maciej Dobrzynski, Joke G Blom
    posted to simulation_algorithms spatial by dagmar to the group compneur on 2007-10-17 14:50:04 as **
  • Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics
    The Journal of Chemical Physics, Vol. 127, No. 10. (2007)
    by Tatiana, Kevin Burrage
    posted to gillespie simulation_algorithms tau by dagmar to the group compneur on 2007-10-16 17:23:00 as **
  • Binomial leap methods for simulating stochastic chemical kinetics
    The Journal of Chemical Physics, Vol. 121, No. 21. (2004), pp. 10356-10364.
    by Tianhai Tian, Kevin Burrage
    posted to simulation_algorithms by dagmar to the group compneur on 2007-10-16 15:53:35 as ** along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
  • Description and Use of LSODE, the Livermore Solver for Ordinary Differential Equations
    Lawrence Livermore National Laboratory Report, Vol. UCRL-ID-113855 (1993)
    by Krishnan Radhakrishnan, Alan C Hindmarsh
    posted to lsode lsodi simulation_algorithms by dagmar to the group compneur on 2007-10-16 14:32:37 as **
  • Predicting temporal fluctuations in an intracellular signalling pathway.
    J Theor Biol, Vol. 192, No. 1. (7 May 1998), pp. 117-128.
    by CJ Morton-Firth, D Bray
    posted to cellular_automata simulation_algorithms by dagmar to the group compneur on 2007-10-16 10:56:04 as ** along with 3 people and 1 group chrn jberro lenov Projet_ENSIMAG
  • Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation
    Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 869-883.
    by P Mendes, D Kell
    posted to gepasi simulation_algorithms simulation_tools by dagmar to the group compneur on 2007-10-16 10:51:12 as ** along with 3 people dullhunk csgillespie pmendes
  • Modeling and simulation of intracellular dynamics: choosing an appropriate framework
    NanoBioscience, IEEE Transactions on, Vol. 3, No. 3. (2004), pp. 200-207.
    by O Wolkenhauer, M Ullah, W Kolch, Kwang-Hyun Cho
    posted to kisao simulation_algorithms by dagmar to the group compneur on 2007-10-15 14:13:50 as ****
  • A multi-algorithm, multi-timescale method for cell simulation.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 538-546.
    by K Takahashi, K Kaizu, B Hu, M Tomita
    posted to simulation_algorithms by dagmar to the group compneur on 2007-10-15 09:41:10 as ** along with 4 people and 2 groups chrn carmaus lenov csanford dIEMoSIRIS MoSi-Rostock
  • INTRODUCTION TO THE KINETIC MONTE CARLO METHOD
    Radiation Effects in Solids (2007), pp. 1-23.
    by Arthur Voter
    posted to kisao monte_carlo simulation_algorithms by dagmar to the group compneur on 2007-10-13 12:41:24 as ** along with 1 person softsimu
  • Trapezoidal tau-leaping formula for the stochastic simulation of biochemical systems
    (2005), pp. 149-152.
    by Y Cao, L Petzold
    posted to gillespie simulation_algorithms stochastic by dagmar to the group compneur on 2007-10-11 15:01:39 as **
  • Adaptive explicit-implicit tau-leaping method with automatic tau selection
    The Journal of Chemical Physics, Vol. 126, No. 22. (2007)
    by Yang Cao, Daniel T Gillespie, Linda R Petzold
    posted to gillespie simulation_algorithms by dagmar to the group compneur on 2007-10-11 14:50:44 as ** along with 1 person khachsar
  • Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method
    The Journal of Chemical Physics, Vol. 119, No. 24. (2003), pp. 12784-12794.
    by Muruhan Rathinam, Linda R Petzold, Yang Cao, Daniel T Gillespie
    posted to gillespie simulation_algorithms stochastic by dagmar to the group compneur on 2007-10-11 14:43:41 as **
  • The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
    Computational Biology and Chemistry, Vol. 30, No. 1. (February 2006), pp. 39-49.
    by James M Mccollum, Gregory D Peterson, Chris D Cox, Michael L Simpson, Nagiza F Samatova
    posted to gillespie simulation_algorithms by dagmar to the group compneur on 2007-10-11 13:55:16 as **
  • Exact Stochastic Simulation of Coupled Chemical Reactions
    The Journal of Physical Chemistry, Vol. 81, No. 25. (1977), pp. 2340-2361.
    by DT Gillespie
    posted to gillespie simulation_algorithms by dagmar to the group compneur on 2007-10-11 11:09:02 as ** along with 1 person pmendes
  • The slow-scale stochastic simulation algorithm.
    J Chem Phys, Vol. 122, No. 1. (1 January 2005)
    by Y Cao, DT Gillespie, LR Petzold
    posted to gillespie simulation_algorithms by dagmar to the group compneur on 2007-10-10 13:15:56 as ** along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
  • Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.
    Syst Biol (Stevenage), Vol. 153, No. 2. (March 2006), pp. 53-60.
    by M Ullah, H Schmidt, KH Cho, O Wolkenhauer
    posted to simulation_algorithms by dagmar to the group compneur on 2007-10-06 20:19:39 as ***** along with 2 people and 3 groups beapen cangiani Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
  • Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico
    FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1783-1788.
    by Kouichi Takahashi, Satya N Arjunan, Masaru Tomita
    posted to sb simulation_algorithms by dagmar to the group compneur on 2007-09-25 15:31:13 as **** along with 8 people and 2 groups monocyte biplabbose chrn biosv carmaus m_j csanford arjunan dIEMoSIRIS MoSi-Rostock
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/group/3092/tag/simulation_algorithms

    RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.