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Group: baker-group - with tag thrombin [98 articles]

グループ baker-group のメンバーが最近追加した論文の一覧 with tag thrombin
  • Factor Va Alters the Conformation of the Na+-Binding Loop of Factor Xa in the Prothrombinase Complex
    Biochemistry, Vol. 47, No. 22. (3 June 2008), pp. 5976-5985.
    by Likui Yang, Chandrashekhara Manithody, Shabir H Qureshi, Alireza R Rezaie
    posted to thrombin by sobolevnrm to the group baker-group on 2008-07-24 12:13:59 as read
  • Molecular dynamics simulation of ion selectivity process in nanopores
    Molecular Simulation, Vol. 34, No. 2. (2008), pp. 169-175.
    by Hongmei Liu, Cynthia J Jameson, Sohail Murad
    posted to electrostatics solvation thrombin by sobolevnrm to the group baker-group on 2008-06-17 11:59:39 as read
  • Unusual 1H NMR chemical shifts support (His) Cepsilon 1---Hmiddle dotmiddle dotmiddle dotO==C H-bond: Proposal for reaction-driven ring flip mechanism in serine protease catalysis
    Proceedings of the National Academy of Sciences, Vol. 97, No. 19. (12 September 2000), pp. 10371-10376.
    by Elissa L Ash, James L Sudmeier, Regina M Day, Matthew Vincent, Ekaterina V Torchilin, Kristin C Haddad, Elizabeth M Bradshaw, David G Sanford, William W Bachovchin
    posted to kinetics thrombin by sobolevnrm to the group baker-group on 2008-06-04 12:18:38 as read
  • Molecular dynamics simulations of the acyl-enzyme and the tetrahedral intermediate in the deacylation step of serine proteases
    Proteins, Vol. 47, No. 3. (2002), pp. 357-369.
    by M Topf, P Várnai, CJ Schofield, WG Richards
    posted to kinetics molecular_simulation thrombin by sobolevnrm to the group baker-group on 2008-06-04 11:58:07 as read
  • Ab Initio QM/MM Dynamics Simulation of the Tetrahedral Intermediate of Serine Proteases: Insights into the Active Site Hydrogen-Bonding Network
    J. Am. Chem. Soc., Vol. 124, No. 49. (11 December 2002), pp. 14780-14788.
    by M Topf, P Varnai, WG Richards
    posted to quantum_mechanics thrombin by sobolevnrm to the group baker-group on 2008-05-27 17:34:05 as read
  • Analysis of Catalytic Mechanism of Serine Proteases. Viability of the Ring-Flip Hypothesis
    J. Phys. Chem. B (8 May 2008)
    by Steve Scheiner
    posted to thrombin by sobolevnrm to the group baker-group on 2008-05-27 17:32:25 as read
  • Engineering Protein Allostery: 1.05 Å Resolution Structure and Enzymatic Properties of a Na+-activated Trypsin
    Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 666-672.
    by Michael J Page, Christopher J Carrell, Enrico Di Cera
    posted to allostery protein_engineering protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2008-05-03 12:32:51 as read
  • Thrombin
    Molecular Aspects of Medicine, Vol. In Press, Corrected Proof
    by Enrico Di Cera
    posted to review thrombin by sobolevnrm to the group baker-group on 2008-04-29 11:26:25 as read
  • Dynamics of single-file water chains inside nanoscale channels: physics, biological significance and applications
    Journal of Physics D: Applied Physics, Vol. 41, No. 10. (2008), 103002.
    by Haiping Fang, Rongzheng Wan, Xiaojing Gong, Hangjun Lu, Songyan Li
    posted to nanotech solvation thrombin by sobolevnrm to the group baker-group on 2008-04-23 11:01:51 as read
  • Triggers, targets and treatments for thrombosis
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 914-918.
    by Nigel Mackman
    posted to thrombin by sobolevnrm to the group baker-group on 2008-03-14 11:14:39 as read along with 1 person DavidG67
  • K+/Na+ Selectivity in K Channels and Valinomycin: Over-coordination Versus Cavity-size constraints
    Journal of Molecular Biology, Vol. 376, No. 1. (8 February 2008), pp. 13-22.
    by Sameer Varma, Dubravko Sabo, Susan B Rempe
    posted to biomembranes ion_channels solvation thrombin by sobolevnrm to the group baker-group on 2008-03-10 11:41:18 as read
  • Structural identification of the pathway of long-range communication in an allosteric enzyme
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1832-1837.
    by Prafull S Gandhi, Zhiwei Chen, Scott F Mathews, Enrico Di Cera
    posted to allostery structure thrombin by sobolevnrm to the group baker-group on 2008-03-04 12:37:52 as read along with 2 people lna cactus
  • Mechanism of Na+ binding to thrombin resolved by ultra-rapid kinetics
    Biophysical Chemistry, Vol. In Press, Accepted Manuscript
    by Stefano Gianni, Ylva Ivarsson, Alaji Bah, Leslie A Bush-Pelc, Enrico Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-10-04 13:12:06 as read
  • Important role of the Cys-191: Cys-220 disulfide bond in thrombin function and allostery
    Journal of Biological Chemistry (in press)
    by Bush LA Pelc, F Marino, Z Chen, AO Pineda, FS Mathews, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-07-23 13:34:53 as read
  • Tuning Ion Coordination Architectures to Enable Selective Partitioning
    Biophysical Journal, Vol. 93, No. 4. (2007), pp. 1093-9.
    by S Varma, SB Rempe
    posted to thrombin biomembranes by sobolevnrm to the group baker-group on 2007-07-23 13:34:53 as read
  • Crystal structures of murine thrombin in complex with the extracellular fragments of murine protease-activated receptors PAR3 and PAR4
    Proceedings of the National Academy of Sciences of the United States of America (in press)
    by A Bah, Z Chen, Push LA Pelc, FS Mathews, E Di Cera
    posted to thrombin structure by sobolevnrm to the group baker-group on 2007-07-07 23:53:48 as read
  • Structural basis of Na+ activation mimicry in murine thrombin
    Journal of Biological Chemistry (in press)
    by F Marino, Z Chen, CE Ergenekan, Bush LA Pelc, FS Mathews, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:37:07 as read
  • Water, proton, and ion transport: from nanotubes to proteins
    Molecular Physics, Vol. 105, No. 2-3. (2007), pp. 201-7.
    by G Hummer
    posted to thrombin solvation by sobolevnrm to the group baker-group on 2007-05-25 14:36:49 as read
  • Protonation changes upon ligand binding to trypsin and thrombin: Structural interpretation based on pKa calculations and ITC experiments
    Journal of Molecular Biology, Vol. 367, No. 5. (2007), pp. 1347-56.
    by P Czodrowski, CA Sotriffer, G Klebe
    posted to thrombin protein-ligand_interactions pka by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Thrombin allostery
    Physical Chemistry Chemical Physics (in press)
    by E Di Cera, MJ Page, A Bah, Bush LA Pelc, LC Garvey
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Rapid kinetics of Na+ binding to thrombin
    Journal of Biological Chemistry (in press)
    by A Bah, LC Garvey, J Ge, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:24:57 as read
  • Dielectric Studies of Water Clusters in Cyclodextrins: Relevance to the Transition between Slow and Fast Forms of Thrombin
    Journal of Physical Chemistry B, Vol. 110, No. 41. (2006), pp. 20609-14.
    by S Bone
    posted to thrombin solvation by sobolevnrm to the group baker-group on 2007-05-25 14:23:20 as read
  • Role of Na+ and K+ in Enzyme Function
    Physiological Reviews, Vol. 86, No. 4. (2006), pp. 1049-92.
    by MJ Page, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:23:20 as read
  • Is Na+ a coagulation factor?
    Thrombosis and Haemostasis, Vol. 95 (2006), pp. 920-1.
    by MJ Page, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:23:20 as read
  • Crystal structure of thrombin in a self-inhibited conformation
    Journal of Biological Chemistry (in press)
    by AO Pineda, ZW Chen, A Bah, LC Garvey, FS Mathews, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:23:19 as read
  • The influence of sodium ion binding on factor IXa activity
    Thrombosis and Haemostasis, Vol. 95, No. 6. (2006), pp. 936-41.
    by K Gopalakrishna, AR Rezaie
    posted to thrombin allostery by sobolevnrm to the group baker-group on 2007-05-25 14:22:46 as read
  • Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 18. (2006), pp. 6835-40.
    by ES Radisky, JM Lee, CJK Lu, Jr
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:22:46 as read
  • Molecular Field Extrema as Descriptors of Biological Activity: Definition and Validatio
    Journal of Chemical Information and Modeling, Vol. 46, No. 2. (2006), pp. 665-76.
    by T Cheeseright, M Mackey, S Rose, A Vinter
    posted to thrombin electrostatics drug_design bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:22:45 as read
  • Slow thrombin in solution
    Biochemical Journal, Vol. 390, No. 2. (2005), pp. e1-e3.
    by JA Huntington
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:22:19 as read
  • Thrombin. Canât Live Without It; Probably Die From It
    Chest, Vol. 124 (2003), pp. 1S-3S.
    by KG Mann
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:22:19 as read
  • A Structural Perspective on Enzymes Activated by Monovalent Cations
    Journal of Biological Chemistry, Vol. 281, No. 3. (2006), pp. 1305-8.
    by E di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:22:18 as read
  • Conversion of Trypsin into a Na+-Activated Enzyme
    Biochemistry, Vol. 45, No. 9. (2006), pp. 2987-93.
    by MJ Page, MR Bleackley, S Wong, RTA Macgillivray, E di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:19:55 as read
  • High resolution crystal structures of free thrombin in the presence of K+ reveal the molecular basis of monovalent cation selectivity and an inactive slow form
    Biophysical Chemistry, Vol. 121, No. 3. (2006), pp. 177-84.
    by CJ Carrell, LA Bush, FS Mathews, E di Cera
    posted to thrombin structure by sobolevnrm to the group baker-group on 2007-05-25 14:19:54 as read
  • Structure and interaction modes of thrombin
    Blood Cells, Molecules, and Diseases (in press)
    by W Bode
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:19:54 as read
  • The Na+ binding channel of human coagulation proteases: Novel insights on the structure and allosteric modulation revealed by molecular surface analysis
    Biophysical Chemistry, Vol. 119, No. 3. (2006), pp. 282-94.
    by Jr, OAC Antunes, RB de Alencastro, SG de Simone
    posted to thrombin allostery by sobolevnrm to the group baker-group on 2007-05-25 14:19:53 as read
  • Murine thrombin lacks Na+ activation but retains high catalytic activity
    Journal of Biological Chemistry (in press)
    by LA Bush, RW Nelson, E di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:19:28 as read
  • Polyphosphate modulates blood coagulation and fibrinolysis
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 4. (2006), pp. 903-8.
    by SA Smith, NJ Mutch, D Baskar, P Rohloff, R Docampo, JH Morrissey
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:19:28 as read
  • Crystal structure of wild-type human thrombin in the Na+-free state
    Biochemical Journal, Vol. 392 (2005), pp. 21-8.
    by JDD Johnson, TE Adams, W Li, JA Huntington
    posted to thrombin structure by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • Efficient Thrombin Generation Requires Molecular Phosphatidylserine, Not a Membrane Surface
    Biochemistry, Vol. 44, No. 51. (2005), pp. 16998-17006.
    by R Majumder, G Weinreb, BR Lentz
    posted to thrombin biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as read
  • Thrombomodulin Tightens the Thrombin Active Site Loops To Promote Protein C Activation
    Biochemistry, Vol. 44, No. 45. (2005), pp. 14784-51.
    by JR Koeppe, A Seitova, T Mather, EA Komives
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:19:04 as read
  • Effects of Calcium Binding on Structure and Autolysis Regulation in Trypsins. A Molecular Dynamics Investigation
    Journal of Chemical Theory and Computation, Vol. 1, No. 6. (2005), pp. 1286-97.
    by E Papaleo, P Fantucci, L De Gioia
    posted to thrombin allostery by sobolevnrm to the group baker-group on 2007-05-25 14:19:03 as read
  • Enzymes activated by monovalent cations: A structural perspective
    Journal of Biological Chemistry (in press)
    by E Di Cera
    posted to thrombin allostery by sobolevnrm to the group baker-group on 2007-05-25 14:19:03 as read
  • Determinants of specificity in coagulation proteases
    Journal of Thrombosis and Haemostasis, Vol. 3, No. 11. (2005)
    by MJ Page, RTA Macgillivray, E Di Cera
    posted to thrombin allostery by sobolevnrm to the group baker-group on 2007-05-25 14:19:03 as read
  • Effect of Na+ binding on the conformation, stability and molecular recognition properties of thrombin
    Biochemical Journal, Vol. 390 (2005), pp. 485-92.
    by V De Filippis, E De Dea, F Lucatello, R Frasson
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:18:44 as read
  • Theoretical Perspectives on the Reaction Mechanism of Serine Proteases: The Reaction Free Energy Profiles of the Acylation Process
    Journal of the American Chemical Society, Vol. 125, No. 39. (2003), pp. 12035-48.
    by T Ishida, S Kato
    posted to thrombin quantum_mechanics by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as read
  • Molecular recognition mechanisms of thrombin
    Journal of Thrombosis and Haemostasis, Vol. 3, No. 8. (2005)
    by JA Huntington
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:18:25 as read
  • von Willebrand factor: two sides of a coin
    Journal of Thrombosis and Haemostasis, Vol. 3, No. 8. (2005)
    by JE Sadler
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:18:25 as read
  • Hirudin Binding Reveals Key Determinants of Thrombin Allostery
    Journal of Biological Chemistry, Vol. 280, No. 29. (2005), pp. 26997-703.
    by KE Mengwasser, LA Bush, P Shih, AM Cantwell, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:18:25 as read
  • Thrombin Functions through Its RGD Sequence in a Non-canonical Conformation
    Journal of Biological Chemistry, Vol. 280, No. 33. (2005), pp. 29393-6.
    by ME Papaconstantinou, CJ Carrell, AO Pineda, KM Bobofchak, FS Mathews, CS Flordellis, ME Maragoudakis, NE Tsopanoglou, E Di Cera
    posted to thrombin structure by sobolevnrm to the group baker-group on 2007-05-25 14:18:25 as read
  • Energetic and Structural Consequences of Perturbing Gly-193 in the Oxyanion Hole of Serine Proteases
    Journal of Biological Chemistry, Vol. 280, No. 27. (2005), pp. 25644-50.
    by KM Bobofchak, AO Pineda, FS Mathews, E Di Cera
    posted to thrombin by sobolevnrm to the group baker-group on 2007-05-25 14:18:24 as read
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