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Group: MoSi-Rostock - library [409 articles]

グループ MoSi-Rostock のメンバーが最近追加した論文の一覧
  • BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge
    Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1805-1807.
    by Laurence Calzone, Francois Fages, Sylvain Soliman
    posted to no-tag by mattis23 to the group MoSi-Rostock on 2008-09-04 15:06:22 as *** along with 1 person and 1 group seahawk27 dIEMoSIRIS
  • BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.
    Bioinformatics (Oxford, England), Vol. 20, No. 17. (22 November 2004), pp. 3289-3291.
    by ML Blinov, JR Faeder, B Goldstein, WS Hlavacek
    posted to no-tag by mattis23 to the group MoSi-Rostock on 2008-05-28 08:30:06 as ** along with 1 group dIEMoSIRIS
  • Modeling and querying biomolecular interaction networks
    Theor. Comput. Sci., Vol. 325, No. 1. (September 2004), pp. 25-44.
    by Nathalie Chabrier-Rivier, Marc Chiaverini, Vincent Danos, Fran\ccois Fages, Vincent Schächter
    posted to no-tag by mattis23 to the group MoSi-Rostock on 2008-03-31 13:42:44 as **** along with 1 group dIEMoSIRIS
  • A Spatial Extension to the [pi] Calculus
    Electronic Notes in Theoretical Computer Science, Vol. 194, No. 3. (20 January 2008), pp. 133-148.
    by Mathias John, Roland Ewald, Adelinde M Uhrmacher
    posted to no-tag by mattis23 to the group MoSi-Rostock on 2008-03-31 13:30:56 as * along with 2 people and 1 group Grobi dagmar dIEMoSIRIS
  • Gene Regulation in the Pi Calculus: Simulating Cooperativity at the Lambda Switch
    Transactions on Computational Systems Biology VII (2006), pp. 24-55.
    by Céline Kuttler, Joachim Niehren
    posted to no-tag by mattis23 to the group MoSi-Rostock on 2008-03-13 19:14:04 as read along with 1 group dIEMoSIRIS
  • A composability lexicon
    Proceedings of the Spring 2003 Simulation Interoperability Workshop (2003), pp. 181-187.
    by MD Petty, EW Weisel
    posted to interoperability composition composability by carmaus to the group MoSi-Rostock on 2007-08-29 16:05:54 as **** along with 1 group dIEMoSIRIS
  • Towards Reusing Model Components in Systems Biology
    Computational Methods in Systems Biology (2005), pp. 192-206.
    by Adelinde M Uhrmacher, Daniela Degenring, Jens Lemcke, Mario Krahmer
    posted to xml systems_biology composition by carmaus to the group MoSi-Rostock on 2007-08-27 13:44:43 as read along with 2 people and 2 groups dagmar csgillespie dIEMoSIRIS compneur
  • Executable biology
    (2006), pp. 1675-1682.
    by Jasmin Fisher, Thomas A Henzinger
    posted to systems-biology by roland_ewald to the group MoSi-Rostock on 2007-08-07 17:25:25 as read along with 2 people and 2 groups wnpx dagmar dIEMoSIRIS compneur
  • A Specification Language and a Framework for the Execution of Composite Models in Systems Biology
    Lecture Notes In Computer Science:Transactions on Computational Systems Biology VII, Vol. 4230 (2006), pp. 163-184.
    by Ofer Margoninski, Peter Saffrey, James Hetherington, Anthony Finkelstein, Anne Warner
    posted to xml systems_biology modularity modeling composition by carmaus to the group MoSi-Rostock on 2007-08-03 08:46:51 as read along with 3 people and 2 groups wnpx krissp dagmar dIEMoSIRIS compneur
  • A Multi-Formalism Modeling Composability Framework: Agent and Discrete-Event Models
    (2005), pp. 249-256.
    by Hessam Sarjoughian, Dongping Huang
    posted to multi-formalism modularity modeling composition agents by carmaus to the group MoSi-Rostock on 2007-08-02 08:31:14 as read along with 1 person and 1 group krissp dIEMoSIRIS
  • Addressing the challenges of multiscale model management in systems biology
    Computers & Chemical Engineering, Vol. 31, No. 8. (15 August 2007), pp. 962-979.
    by J Hetherington, IDL Bogle, P Saffrey, O Margoninski, L Li, Varela M Rey, S Yamaji, S Baigent, J Ashmore, K Page, RM Seymour, A Finkelstein, A Warner
    posted to multi-scale model_management model by carmaus to the group MoSi-Rostock on 2007-08-01 10:43:48 as ** along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
  • Alternative signaling pathways: When, where and why?
    FEBS Letters, Vol. 579, No. 24. (10 October 2005), pp. 5265-5274.
    by Yunchen Gong, Zhaolei Zhang
    posted to specificity signaling by carmaus to the group MoSi-Rostock on 2007-07-31 08:08:05 as ** along with 1 person and 1 group arne dIEMoSIRIS
  • Model composability: formulating a research thrust: composable simulations
    (2000), pp. 1577-1584.
    by Stephen Kasputis, Henry C Ng
    posted to simulation modularity modeling composition by carmaus to the group MoSi-Rostock on 2007-07-30 09:09:33 as ** along with 2 people and 1 group krissp Scis0000002 dIEMoSIRIS
  • Architectural mismatch or why it's hard to build systems out of existing parts
    (1995), pp. 179-185.
    by David Garlan, Robert Allen, John Ockerbloom
    posted to modularity engineering composition by carmaus to the group MoSi-Rostock on 2007-07-30 09:03:07 as ** along with 11 people and 2 groups hamish lfk jolilius fachri bfraser ddahlem krissp RalfMitschke buchgeher gvdh ingstrup TUCS-ES_Lab dIEMoSIRIS
  • Stochastic simulation of chemical kinetics.
    Annu Rev Phys Chem, Vol. 58 (2007), pp. 35-55.
    by DT Gillespie
    posted to tau-leaping stiff_systems master_equation langevin_equation by carmaus to the group MoSi-Rostock on 2007-07-30 08:29:59 as ** along with 3 people and 2 groups dbikard pmendes jjray dIEMoSIRIS Centre de Recherches Interdisciplinaires
  • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 221-231.
    by JJ Tyson, KC Chen, B Novak
    posted to pathways ode modularity dynamic by carmaus to the group MoSi-Rostock on 2007-07-30 07:44:18 as ** along with 5 people and 4 groups camster rklancer monod rhem1224 bayesian dbk-lab TCR_Signaling SysbioMPI-TCells dIEMoSIRIS
  • little b - a language for modular, shareable models of biological systems
    (2004)
    by A Mallavarapu, J Gunawardena
    posted to virtual_cell modularity littleb by carmaus to the group MoSi-Rostock on 2007-07-25 16:42:13 as read along with 1 group dIEMoSIRIS
  • Systems biology: its practice and challenges.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513.
    by A Aderem
    posted to systems_biology modularity commentary by carmaus to the group MoSi-Rostock on 2007-07-25 12:46:13 as read along with 3 people and 1 group LeightonP wnpx biosv dIEMoSIRIS
  • A practical guide to stochastic simulations of reaction-diffusion processes
    (15 Apr 2007)
    by Radek Erban, Jonathan Chapman, Philip Maini
    posted to systems-biology stochastic-simulation simulation gillespie biology by roland_ewald to the group MoSi-Rostock on 2007-07-23 09:07:13 as * along with 3 people and 2 groups cottrell dagmar csgillespie dIEMoSIRIS compneur
  • NetLogo: A Simple Environment for Modeling Complexity
    (2004)
    by Seth Tisue, Uri Wilensky
    posted to simulation-system simulation modeling complex-systems by roland_ewald to the group MoSi-Rostock on 2007-07-20 10:08:50 as ** along with 1 group dIEMoSIRIS
  • The Multi-Agent Simulation Environment SeSAm
    (April 1998)
    by Franziska Klügl, Frank Puppe
    posted to simulation-system sesam mas by roland_ewald to the group MoSi-Rostock on 2007-07-20 10:02:52 as ** along with 1 person and 2 groups MarioPaolucci dIEMoSIRIS LABSS
  • MASON: A New Multi-Agent Simulation Toolkit
    (2004)
    by Sean Luke, Claudio Cioffi-Revilla, Liviu Panait, Keith Sullivan
    posted to simulation-system simulation mason mas by roland_ewald to the group MoSi-Rostock on 2007-07-20 10:00:21 as ** along with 1 group dIEMoSIRIS
  • A multi-algorithm, multi-timescale method for cell simulation.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 538-546.
    by K Takahashi, K Kaizu, B Hu, M Tomita
    posted to simulation multi-timescale multi-level multi-algorithm modeling hybrid by carmaus to the group MoSi-Rostock on 2007-07-19 10:10:17 as **** along with 4 people and 2 groups chrn dagmar lenov csanford dIEMoSIRIS compneur
  • Applying Petri Nets to Systems Biology using XML Technologies
    (March 2004)
    by Oliver Shaw, Albert Koelmans, Jason Steggles, Anil Wipat
    posted to xml sysbio sbml pnml petrinets bioinformatics by carmaus to the group MoSi-Rostock on 2007-07-18 15:50:41 as ** along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
  • Noise-Induced Min Phenotypes in E. coli
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e80.
    by David Fange, Johan Elf
    posted to nsm model example by carmaus to the group MoSi-Rostock on 2007-07-17 15:11:58 as ** along with 1 group dIEMoSIRIS
  • An Introduction to Stochastic Processes with Biology Applications
    (28 April 2003)
    by Linda J Allen
    posted to theory systems-biology modeling markov-processes by roland_ewald to the group MoSi-Rostock on 2007-07-17 09:48:27 as **** along with 1 group dIEMoSIRIS
  • FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 261-269.
    by S Klamt, J Stelling, M Ginkel, ED Gilles
    posted to sysbio stoichiometry by carmaus to the group MoSi-Rostock on 2007-07-13 10:03:25 as ** along with 2 people and 1 group alexg balicea dIEMoSIRIS
  • Discrete Event Modeling and Simulation in Systems Biology
    Journal of Simulation, Vol. 1, No. 2. (2007), pp. 81-96.
    by Roland Ewald, Carsten Maus, Arndt Rolfs, Adelinde M Uhrmacher
    posted to wnt systems-biology simulation process-algebra petri-nets modeling devs by roland_ewald to the group MoSi-Rostock on 2007-07-13 09:31:54 as read along with 1 person and 1 group csgillespie dIEMoSIRIS
  • cPath: open source software for collecting, storing, and querying biological pathways
    BMC Bioinformatics, Vol. 7 (13 November 2006), 497.
    by Ethan G Cerami, Gary D Bader, Benjamin Gross, Chris Sander
    posted to pathways data by carmaus to the group MoSi-Rostock on 2007-07-10 14:59:30 as ** along with 6 people and 1 group jfr dquest bootsy cerami AlexanderPico srp33 dIEMoSIRIS
  • UML as a cell and biochemistry modeling language.
    Biosystems, Vol. 80, No. 3. (June 2005), pp. 283-302.
    by K Webb, T White
    posted to uml modeling biochemical by carmaus to the group MoSi-Rostock on 2007-07-10 14:57:47 as ** along with 3 people and 5 groups wigelius dalloliogm angelika12 HCI-IHTE-TUT Web2 splicing yeast dIEMoSIRIS
  • Dynamic Models in Biology
    (27 March 2006)
    by Stephen P Ellner, John Guckenheimer
    posted to sysbio modeling dynamic by carmaus to the group MoSi-Rostock on 2007-07-06 10:58:30 as ** along with 1 group dIEMoSIRIS
  • Individual-based Modeling and Ecology (Princeton Series in Theoretical and Computational Biology)
    (05 July 2005)
    by Volker Grimm, Steven F Railsback
    posted to modeling agents by carmaus to the group MoSi-Rostock on 2007-07-06 10:47:05 as ** along with 2 people and 2 groups spirit_of_numenor larios ComplexAdaptiveSystems dIEMoSIRIS
  • HTN Planning: Complexity and Expressivity
    Vol. 2 (1994), pp. 1123-1128.
    by Kutluhan Erol, James Hendler, Dana S Nau
    posted to planning htn by fmarquar to the group MoSi-Rostock on 2007-06-25 14:43:37 as ** along with 1 group MuSAMA
  • What planner for ambient intelligence applications?
    Systems, Man and Cybernetics, Part A, IEEE Transactions on, Vol. 35, No. 1. (2005), pp. 7-21.
    by F Amigoni, N Gatti, C Pinciroli, M Roveri
    posted to planning htn by fmarquar to the group MoSi-Rostock on 2007-06-23 17:14:28 as ***** along with 1 person and 1 group Christiane MuSAMA
  • The computer for the 21st century
    (1995), pp. 933-940.
    by Mark Weiser
    posted to ubiquitous pervasive by fmarquar to the group MoSi-Rostock on 2007-06-22 13:53:22 as ***** along with 14 people and 1 group jonathanbp hansjoergmueller chichijerry aquaric ingstrup J_Raff hugoff calmazan Madison80 sdw135 Steffen_Sorensen clilly procrastinator skasey MuSAMA
  • Current Trends in Automated Planning
    AI Magazine (2007)
    by Dana S Nau
    posted to planning htn by fmarquar to the group MoSi-Rostock on 2007-06-22 13:38:40 as read along with 1 group MuSAMA
  • Semantic Web Technology as a Basis for Planning and Scheduling Systems
    (June JanuaryAprilth 2006)
    by Bernd Schattenberg, Steffen Balzer, Susanne Biundo
    posted to planning htn by fmarquar to the group MoSi-Rostock on 2007-06-22 13:00:30 as *** along with 1 group MuSAMA
  • Knowledge-based Middleware as an Architecture for Planning and Scheduling Systems
    (2006)
    by Bernd Schattenberg, Steffen Balzer, Susanne Biundo
    posted to planning middleware htn by fmarquar to the group MoSi-Rostock on 2007-06-22 12:56:07 as *** along with 1 group MuSAMA
  • Model-Based Data Engineering for Web Services
    Internet Computing, IEEE, Vol. 9, No. 4. (2005), pp. 65-70.
    by A Tolk, SY Diallo
    posted to webservice model composition by fmarquar to the group MoSi-Rostock on 2007-06-21 16:18:47 as *** along with 2 people and 1 group architect kashmira MuSAMA
  • The Anatomy of the Grid: Enabling Scalable Virtual Organizations
    Int. J. High Perform. Comput. Appl., Vol. 15, No. 3. (August 2001), pp. 200-222.
    by Ian Foster, Carl Kesselman, Steven Tuecke
    posted to grid-computing by roland_ewald to the group MoSi-Rostock on 2007-06-21 13:35:18 as ** along with 5 people and 3 groups cmalek greatgator travieso ahgharaibeh dcordeiro Knowledge_Management dIEMoSIRIS Social_Learning_Software_Lab
  • The Physiology of the Grid: An Open Grid Services Architecture for Distributed Systems Integration
    (2002)
    by I Foster, C Kesselman, J Nick, S Tuecke
    posted to grid-computing by roland_ewald to the group MoSi-Rostock on 2007-06-21 13:32:54 as ** along with 7 people and 5 groups soundray greatgator s3lab bsotomay cybrpunk junehlee Sangrasi dopsy s3lab grid gridvirt dIEMoSIRIS
  • Local Time Warp: An Implementation and Performance Analysis
    (2007), pp. 163-170.
    by Hassan Rajaei
    posted to simulation pads optimistic-simulation algorithms by roland_ewald to the group MoSi-Rostock on 2007-06-21 01:43:45 as **** along with 1 person and 1 group liujacky2001 dIEMoSIRIS
  • A Flexible Dynamic Partitioning Algorithm for Optimistic Distributed Simulation
    (2007), pp. 219-228.
    by Patrick Peschlow, Tobias Honecker, Peter Martini
    posted to simulation partitioning pads load-balancing by roland_ewald to the group MoSi-Rostock on 2007-06-21 01:40:27 as **** along with 1 person and 1 group liujacky2001 dIEMoSIRIS
  • Macro-Micro Economic System Simulation
    (2007), pp. 105-112.
    by BSS Onggo, K Kusano, T Sato
    posted to simulation pads multi-level-ms modeling economics by roland_ewald to the group MoSi-Rostock on 2007-06-21 01:30:57 as **** along with 1 group dIEMoSIRIS
  • Asynchronous Event-Driven Particle Algorithms
    (2007), pp. 83-92.
    by Aleksandar Donev
    posted to systems-biology simulation molecular-dynamics algorithms by roland_ewald to the group MoSi-Rostock on 2007-06-21 01:22:35 as **** along with 1 group dIEMoSIRIS
  • Ad Hoc Distributed Simulations
    (2007), pp. 15-24.
    by Richard Fujimoto, Michael Hunter, Jason Sirichoke, Mahesh Palekar, Hoe Kim, Wonho Suh
    posted to traffic-simulation simulation pads ad-hoc-simulation by roland_ewald to the group MoSi-Rostock on 2007-06-21 01:19:06 as *** along with 1 person and 1 group liujacky2001 dIEMoSIRIS
  • Adaptive Support of Range Queries via Push-Pull Algorithms
    (2007), pp. 53-60.
    by Rob Minson, Georgios Theodoropoulos
    posted to simulation pads mas interest-management by roland_ewald to the group MoSi-Rostock on 2007-06-21 01:15:40 as ***** along with 1 group dIEMoSIRIS
  • Exploiting Lookahead in Parallel Simulation
    IEEE Trans. Parallel Distrib. Syst., Vol. 1, No. 4. (October 1990), pp. 457-469.
    by YB Lin, ED Lazowska
    posted to theory simulation performance-analysis pads conservative-simulation by roland_ewald to the group MoSi-Rostock on 2007-06-20 13:23:19 as ** along with 1 person and 1 group Meng dIEMoSIRIS
  • Simulation Of Packet Communication Architecture Computer Systems
    (1977)
    by RE Bryant
    posted to simulation pads not-available-online conservative-simulation by roland_ewald to the group MoSi-Rostock on 2007-06-20 13:16:14 as ** along with 1 group dIEMoSIRIS
  • Distributed Simulation: A Case Study in Design and Verification of Distributed Programs
    Software Engineering, IEEE Transactions on, Vol. SE-5, No. 5. (1979), pp. 440-452.
    by KM Chandy, J Misra
    posted to simulation pads no-permission-to-download conservative-simulation by roland_ewald to the group MoSi-Rostock on 2007-06-20 13:04:04 as ** along with 1 group dIEMoSIRIS
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