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Group: Koch_Lab - library [101 articles]

グループ Koch_Lab のメンバーが最近追加した論文の一覧
  • DNA overwinds when stretched
    Nature, Vol. 442, No. 7104. (12 July 2006), pp. 836-839.
    by Jeff Gore, Zev Bryant, Marcelo Nã¶llmann, Mai U Le, Nicholas R Cozzarelli, Carlos Bustamante
    posted to single-molecule magnetic dna by skoch3 to the group Koch_Lab on 2008-07-07 06:49:38 as read
  • Tuneable elastomeric nanochannels for nanofluidic manipulation
    Nat Mater, Vol. 6, No. 6. (June 2007), pp. 424-428.
    by Dongeun Huh, KL Mills, Xiaoyue Zhu, Mark A Burns, MD Thouless, Shuichi Takayama
    posted to pdms nanotechnology nanochannels dna by skoch3 to the group Koch_Lab on 2008-07-01 06:41:59 as ****
  • Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters
    Nature Structural & Molecular Biology, Vol. 13, No. 3. (19 February 2006), pp. 256-263.
    by Walter J Jessen, Scott A Hoose, Jessica A Kilgore, Michael P Kladde
    posted to single-molecule remodeling pho5 chromatin by skoch3 to the group Koch_Lab on 2008-06-19 18:10:02 as ***** along with 1 person ramalldf
  • Single-Molecule Studies Reveal Dynamics of DNA Unwinding by the Ring-Shaped T7 Helicase
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1299-1309.
    by Daniel S Johnson, Lu Bai, Benjamin Y Smith, Smita S Patel, Michelle D Wang
    posted to unzipping single-molecule helicase dna biophysics by skoch3 to the group Koch_Lab on 2008-06-14 23:31:19 as read
  • Affinity purification of specific chromatin segments from chromosomal loci in yeast.
    Molecular and cellular biology, Vol. 23, No. 24. (December 2003), pp. 9275-9282.
    by J Griesenbeck, H Boeger, JS Strattan, RD Kornberg
    posted to yeast transcription purification isolation chromatin by skoch3 to the group Koch_Lab on 2008-05-29 07:03:50 as *****
  • A general method for manipulating DNA sequences from any organism with optical tweezers
    Nucleic Acids Research, Vol. 34, No. 2. (2006), pp. e15-e15.
    by Derek N Fuller, Gregory J Gemmen, John P Rickgauer, Aurelie Dupont, Rachel Millin, Pierre Recouvreux, Douglas E Smith
    posted to tweezers tethering single-molecule pcr optical dna by skoch3 to the group Koch_Lab on 2008-05-20 00:10:11 as ****
  • Capturing Chromosome Conformation
    Science, Vol. 295, No. 5558. (15 February 2002), pp. 1306-1311.
    by Job Dekker, Karsten Rippe, Martijn Dekker, Nancy Kleckner
    posted to yeast in-vivo digestion chromatin by skoch3 to the group Koch_Lab on 2008-05-19 18:29:59 as read along with 1 person ccr
  • Histone Octamer Instability under Single Molecule Experiment Conditions
    J. Biol. Chem., Vol. 280, No. 20. (20 May 2005), pp. 19958-19965.
    by Cyril Claudet, Dimitar Angelov, Philippe Bouvet, Stefan Dimitrov, Jan Bednar
    posted to single-molecule native chromatin biophysics by skoch3 to the group Koch_Lab on 2008-05-15 10:10:01 as *****
  • On-site manipulation of single whole-genome DNA molecules using optical tweezers
    Applied Physics Letters, Vol. 85, No. 21. (2004), pp. 5090-5092.
    by Hidehiro Oana, Koji Kubo, Kenichi Yoshikawa, Haruyuki Atomi, Tadayuki Imanaka
    posted to tweezers single-molecule optical chromatin by skoch3 to the group Koch_Lab on 2008-05-15 05:22:37 as ***** along with 1 person hirokiS
  • Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 1. (4 January 2000), pp. 127-132.
    by Y Cui, C Bustamante
    posted to single-molecule chromatin by skoch3 to the group Koch_Lab on 2008-05-15 00:06:33 as read
  • Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules
    Science, Vol. 271, No. 5250. (9 February 1996), pp. 795-799.
    by Steven B Smith, Yujia Cui, Carlos Bustamante
    posted to worm-like wlc single-molecule overstretching freely-jointed fjc dna chain by skoch3 to the group Koch_Lab on 2008-05-07 07:57:43 as read along with 1 person phisics
  • Rad6-dependent ubiquitination of histone H2B in yeast.
    Science (New York, N.Y.), Vol. 287, No. 5452. (21 January 2000), pp. 501-504.
    by K Robzyk, J Recht, MA Osley
    posted to ubiquitylation rad6 histone h2bub h2b by skoch3 to the group Koch_Lab on 2008-05-06 23:12:11 as read
  • Regulation of histone H2A and H2B ubiquitylation.
    Briefings in functional genomics & proteomics, Vol. 5, No. 3. (September 2006), pp. 179-189.
    by MA Osley
    posted to ubiquitylation review histone h2b h2a by skoch3 to the group Koch_Lab on 2008-05-06 23:11:26 as read
  • Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter.
    Molecular and cellular biology, Vol. 24, No. 24. (December 2004), pp. 10965-10974.
    by P Korber, T Luckenbach, D Blaschke, W Hörz
    posted to transcription remodeling pho5 chromatin by skoch3 to the group Koch_Lab on 2008-05-06 17:48:04 as read
  • Restriction nucleases as probes for chromatin structure.
    Methods in molecular biology (Clifton, N.J.), Vol. 119 (1999), pp. 417-425.
    by PD Gregory, S Barbaric, W Hörz
    posted to restriction remodeling enzymes chromatin by skoch3 to the group Koch_Lab on 2008-05-06 17:47:16 as read
  • de FACTo nucleosome dynamics.
    J Biol Chem (9 June 2006)
    by Danny Reinberg, Robert J J Sims
    posted to transcription remodeling fact chromatin by skoch3 to the group Koch_Lab on 2008-05-06 17:03:31 as read along with 1 person and 1 group xico WetBiology
  • FACT, a factor that facilitates transcript elongation through nucleosomes.
    Cell, Vol. 92, No. 1. (9 January 1998), pp. 105-116.
    by G Orphanides, G LeRoy, CH Chang, DS Luse, D Reinberg
    posted to transcription fact chromatin by skoch3 to the group Koch_Lab on 2008-05-06 17:02:13 as read
  • BRCA1 is a component of the RNA polymerase II holoenzyme
    Proceedings of the National Academy of Sciences, Vol. 94, No. 11. (27 May 1997), pp. 5605-5610.
    by Ralph Scully, Stephen F Anderson, David M Chao, Wanjiang Wei, Liyan Ye, Richard A Young, David M Livingston, Jeffrey D Parvin
    posted to transcription pol ii holoenzyme brca1 by skoch3 to the group Koch_Lab on 2008-05-05 08:21:01 as *****
  • Regulation of DNA double-strand break repair pathway choice
    Cell Res, Vol. 18, No. 1. (0000), pp. 134-147.
    by Meena Shrivastav, Leyma P De Haro, Jac A Nickoloff
    posted to repair dsb double-strand dna break by skoch3 to the group Koch_Lab on 2008-05-05 06:16:10 as read along with 1 person lyndallsarkies
  • The multiple nuclear functions of BRCA1: transcription, ubiquitination and DNA repair
    Current Opinion in Cell Biology, Vol. 15, No. 3. (June 2003), pp. 345-350.
    by Lea M Starita, Jeffrey D Parvin
    posted to transcription repair dna damage brca1 by skoch3 to the group Koch_Lab on 2008-05-05 06:08:58 as *****
  • The BRCA2-Interacting Protein BCCIP Functions in RAD51 and BRCA2 Focus Formation and Homologous Recombinational Repair
    Mol. Cell. Biol., Vol. 25, No. 5. (1 March 2005), pp. 1949-1957.
    by Huimei Lu, Xu Guo, Xiangbing Meng, Jingmei Liu, Chris Allen, Justin Wray, Jac A Nickoloff, Zhiyuan Shen
    posted to repair rad51 hr dna damage brca2 bccip by skoch3 to the group Koch_Lab on 2008-05-04 06:11:13 as *****
  • BCCIP regulates homologous recombination by distinct domains and suppresses spontaneous DNA damage.
    Nucleic acids research, Vol. 35, No. 21. (2007), pp. 7160-7170.
    by H Lu, J Yue, X Meng, JA Nickoloff, Z Shen
    posted to repair hr dna damage brca2 bccip by skoch3 to the group Koch_Lab on 2008-05-04 06:04:31 as ****
  • Checkpoint kinase 2-mediated phosphorylation of BRCA1 regulates the fidelity of nonhomologous end-joining.
    Cancer research, Vol. 66, No. 3. (1 February 2006), pp. 1401-1408.
    by J Zhuang, J Zhang, H Willers, H Wang, JH Chung, DC van Gent, DE Hallahan, SN Powell, F Xia
    posted to repair nhej hr dsb dna damage brca1 by skoch3 to the group Koch_Lab on 2008-05-04 05:45:24 as ****
  • Concerted transcriptional regulation by BRCA1 and COBRA1 in breast cancer cells.
    International journal of biological sciences, Vol. 3, No. 7. (2007), pp. 486-492.
    by SE Aiyar, H Cho, J Lee, R Li
    posted to transcription cobra1 cancer breast brca1 by skoch3 to the group Koch_Lab on 2008-05-03 09:08:03 as ***
  • NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation.
    Cell, Vol. 97, No. 1. (2 April 1999), pp. 41-51.
    by Y Yamaguchi, T Takagi, T Wada, K Yano, A Furuya, S Sugimoto, J Hasegawa, H Handa
    posted to transcription nelf drb by skoch3 to the group Koch_Lab on 2008-05-02 23:41:03 as read
  • Human transcription elongation factor NELF: identification of novel subunits and reconstitution of the functionally active complex.
    Molecular and cellular biology, Vol. 23, No. 6. (March 2003), pp. 1863-1873.
    by T Narita, Y Yamaguchi, K Yano, S Sugimoto, S Chanarat, T Wada, DK Kim, J Hasegawa, M Omori, N Inukai, M Endoh, T Yamada, H Handa
    posted to transcription nelf-b nelf dsif cobra1 brca1 by skoch3 to the group Koch_Lab on 2008-05-02 18:01:59 as *****
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to transcription stalled pol ii drosophila chip-chip by skoch3 to the group Koch_Lab on 2008-05-01 23:46:24 as ***** along with 4 people mikaelhuss caseybrown margaritis rschulz
  • Chromatin remodeling: insights and intrigue from single-molecule studies
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 989-996.
    by Bradley R Cairns
    posted to single-molecule review remodeling chromatin by skoch3 to the group Koch_Lab on 2008-04-30 06:21:30 as ***** along with 2 people and 1 group zhlei cwbrown EisenLab
  • Interplay of ion binding and attraction in DNA condensed by multivalent cations
    Nucl. Acids Res., Vol. 36, No. 2. (2 February 2008), pp. 501-510.
    by Brian A Todd, Donald C Rau
    posted to spectroscopy multivalent force dna condensation cations biophysics by skoch3 to the group Koch_Lab on 2008-04-28 20:51:56 as ***** along with 1 person and 1 group sobolevnrm baker-group
  • BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer.
    Cell, Vol. 102, No. 2. (21 July 2000), pp. 257-265.
    by DA Bochar, L Wang, H Beniya, A Kinev, Y Xue, WS Lane, W Wang, F Kashanchi, R Shiekhattar
    posted to transcription swisnf remodeling chromatin brca1 by skoch3 to the group Koch_Lab on 2008-04-23 21:14:22 as *****
  • Ten-microsecond MD simulation of a fast-folding WW domain
    Biophys. J. (13 March 2008), biophysj.108.131565.
    by Peter L Freddolino, Feng Liu, Martin H Gruebele, Klaus Schulten
    posted to protein md folding by skoch3 to the group Koch_Lab on 2008-04-23 20:30:59 as **** along with 3 people biehl samjlord paulschlesinger
  • BRCA1 cooperates with NUFIP and P-TEFb to activate transcription by RNA polymerase II.
    Oncogene, Vol. 23, No. 31. (8 July 2004), pp. 5316-5329.
    by P Cabart, HK Chew, S Murphy
    posted to brca1 elongation p-tefb transcription by skoch3 to the group Koch_Lab on 2008-04-16 08:36:51 as ****
  • From the Cover: Direct DNA binding by Brca1
    Proceedings of the National Academy of Sciences, Vol. 98, No. 11. (22 May 2001), pp. 6086-6091.
    by Tanya T Paull, David Cortez, Blair Bowers, Stephen J Elledge, Martin Gellert
    posted to brca1 damage dna dsb mrn repair by skoch3 to the group Koch_Lab on 2008-04-16 07:15:47 as ****
  • The roles of BRCA1 and BRCA2 and associated proteins in the maintenance of genomic stability.
    Oncogene, Vol. 25, No. 43. (25 September 2006), pp. 5864-5874.
    by K Gudmundsdottir, A Ashworth
    posted to brca1 brca2 dna dsb repair by skoch3 to the group Koch_Lab on 2008-04-16 07:12:35 as ****
  • Good Timing in the Cell Cycle for Precise DNA Repair by BRCA1.
    Cell Cycle, Vol. 4, No. 9. (13 September 2005)
    by Stephen T Durant, Jac A Nickoloff
    posted to brca1 chromatin dna dsb hr mrn nhej repair by skoch3 to the group Koch_Lab on 2008-04-16 07:08:54 as ***** along with 1 person ecattell
  • ATP-dependent chromatin remodeling factors and DNA damage repair
    Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, Vol. 618, No. 1-2. (1 May 2007), pp. 65-80.
    by Mary A Osley, Toyoko Tsukuda, Jac A Nickoloff
    posted to chromatin damage dna dsb ner repair review by skoch3 to the group Koch_Lab on 2008-04-16 07:04:36 as *****
  • Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1791-1792.
    by Leighton J Core, John T Lis
    posted to gene puasing regulation transcription by skoch3 to the group Koch_Lab on 2008-04-10 07:08:17 as ***** along with 2 people margaritis biomcgary
  • Single-molecule experiments in vitro and in silico.
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1144-1148.
    by M Sotomayor, K Schulten
    posted to dynamic dynamics force in-silico molecular single-molecule smd spectroscopy by skoch3 to the group Koch_Lab on 2008-03-31 16:57:09 as ***** along with 2 people hsekiguc choonpeng
  • The epigenomics of cancer.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 683-692.
    by PA Jones, SB Baylin
    posted to cancer chromatin epigenetics epigenomics remodeling silencing transcription by skoch3 to the group Koch_Lab on 2008-03-31 16:41:04 as read along with 2 people SeungjoonOh cerami
  • Probing the relation between force--lifetime--and chemistry in single molecular bonds.
    Annu Rev Biophys Biomol Struct, Vol. 30 (2001), pp. 105-128.
    by E Evans
    posted to classic dynamic force single-molecule spectroscopy by skoch3 to the group Koch_Lab on 2008-03-29 21:11:34 as read along with 1 person hsekiguc
  • EM visualization of Pol II genes in Drosophila: most genes terminate without prior 3' end cleavage of nascent transcripts.
    Chromosoma, Vol. 111, No. 1. (March 2002), pp. 1-12.
    by YN Osheim, ML Sikes, AL Beyer
    posted to em ii pol polymerase termination transcription by skoch3 to the group Koch_Lab on 2008-03-20 05:40:05 as read
  • Detection of High-Affinity and Sliding Clamp Modes for MSH2-MSH6 by Single-Molecule Unzipping Force Analysis
    Molecular Cell, Vol. 20, No. 5. (9 December 2005), pp. 771-781.
    by Jingjing Jiang, Lu Bai, Jennifer A Surtees, Zekeriyya Gemici, Michelle D Wang, Eric Alani
    posted to mismatch ot protein-dna repair unzipping by skoch3 to the group Koch_Lab on 2008-03-18 04:43:47 as read
  • Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy
    Biophys. J., Vol. 90, No. 10. (15 May 2006), pp. 3672-3685.
    by Newby, Eva Vocker, Seth Blumberg, Stefanie Redemann, Arivalagan Gajraj, Jens-Christian Meiners, Nils G Walter
    posted to motion particle rna tethered tpm by skoch3 to the group Koch_Lab on 2008-03-18 04:33:06 as **** along with 1 person ssfeldman
  • Emergence of Novel Color Vision in Mice Engineered to Express a Human Cone Photopigment
    Science, Vol. 315, No. 5819. (23 March 2007), pp. 1723-1725.
    by Gerald H Jacobs, Gary A Williams, Hugh Cahill, Jeremy Nathans
    posted to color cool trichromacy vision by skoch3 to the group Koch_Lab on 2008-03-16 04:48:10 as read along with 2 people and 2 groups neilh shivakmr VisionLab S-Lab
  • Optical trapping
    Review of Scientific Instruments, Vol. 75, No. 9. (2004), pp. 2787-2809.
    by Keir C Neuman, Steven M Block
    posted to howto optical review trapping tweezers by skoch3 to the group Koch_Lab on 2008-03-16 04:12:12 as *****
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
    posted to factors mechanical microfluidics pdms transcription trapping by skoch3 to the group Koch_Lab on 2008-03-09 05:24:09 as read along with 8 people and 1 group brant jjray dpollard emilyhare adepace aswin blobbybirdman emptyhb EisenLab
  • Visualizing single DNA-bound proteins using DNA as a scanning probe
    Nature Methods, Vol. 4, No. 12. (11 November 2007), pp. 1031-1036.
    by Maarten C Noom, Bram van den Broek, Joost van Mameren, Gijs JL Wuite
    posted to biophysics dna dynamic force optical protein single-molecule spectroscopy tweezers by skoch3 to the group Koch_Lab on 2007-12-26 22:27:17 as *****
  • Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation.
    Front Biosci, Vol. 13 (2008), pp. 929-943.
    by P Collas, JA Dahl
    posted to chip chromatin immunoprecipitation review by skoch3 to the group Koch_Lab on 2007-12-16 07:04:20 as *****
  • From the Cover: Mapping hydration dynamics around a protein surface.
    Proc Natl Acad Sci U S A, Vol. 104, No. 47. (20 November 2007), pp. 18461-18466.
    by L Zhang, L Wang, YT Kao, W Qiu, Y Yang, O Okobiah, D Zhong
    posted to biophysics dynamics hydration water by skoch3 to the group Koch_Lab on 2007-12-03 03:58:31 as *** along with 2 people and 1 group sobolevnrm kjell baker-group
  • The Great Hunt For Extra Compliance
    Biophys. J., Vol. 93, No. 12. (15 December 2007), 4099.
    by Jan Liphardt
    posted to biophysics dna elasticity wlc by skoch3 to the group Koch_Lab on 2007-11-29 04:28:47 as ****
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