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Group: splicing - library [63 articles]

グループ splicing のメンバーが最近追加した論文の一覧
  • Alternative splicing and protein function.
    BMC Bioinformatics, Vol. 6, No. 1. (7 November 2005)
    by Alexey D Neverov, Irena I Artamonova, Ramil N Nurtdinov, Dmitrij Frishman, Mikhail Gelfand, Andrey Mironov
    posted to alternative_splicing by dalloliogm to the group splicing on 2007-08-01 10:58:12 as read along with 2 people and 2 groups jestrada antonkratz Web2 yeast
  • The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
    Science, Vol. 307, No. 5713. (25 February 2005), pp. 1321-1324.
    by Brendan J Loftus, Eula Fung, Paola Roncaglia, Don Rowley, Paolo Amedeo, Dan Bruno, Jessica Vamathevan, Molly Miranda, Iain J Anderson, James A Fraser, Jonathan E Allen, Ian E Bosdet, Michael R Brent, Readman Chiu, Tamara L Doering, Maureen J Donlin, Cletus A D'Souza, Deborah S Fox, Viktoriya Grinberg, Jianmin Fu, Marilyn Fukushima, Brian J Haas, James C Huang, Guilhem Janbon, Steven J Jones, Hean L Koo, Martin I Krzywinski, June K Kwon-Chung, Klaus B Lengeler, Rama Maiti, Marco A Marra, Robert E Marra, Carrie A Mathewson, Thomas G Mitchell, Mihaela Pertea, Florenta R Riggs, Steven L Salzberg, Jacqueline E Schein, Alla Shvartsbeyn, Heesun Shin, Martin Shumway, Charles A Specht, Bernard B Suh, Aaron Tenney, Terry R Utterback, Brian L Wickes, Jennifer R Wortman, Natasja H Wye, James W Kronstad, Jennifer K Lodge, Joseph Heitman, Ronald W Davis, Claire M Fraser, Richard W Hyman
    posted to neoformans jec21 genome b-3501 by dalloliogm to the group splicing on 2007-05-21 15:07:34 as ***** along with 5 people and 2 groups labedan Cortel jwortman stajich alexl Web2 yeast
  • Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
    Eukaryot Cell, Vol. 5, No. 5. (May 2006), pp. 789-793.
    by JE Stajich, FS Dietrich
    posted to splicing neoformans intron_retention data by dalloliogm to the group splicing on 2007-04-23 11:05:52 as ***** along with 3 people and 2 groups stajich raylim seitentaisei Web2 yeast
  • Conceptual data modelling for bioinformatics.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 166-180.
    by E Bornberg-Bauer, NW Paton
    posted to uml modeling bioinformatics bioinf by dalloliogm to the group splicing on 2007-03-30 15:49:49 as **** along with 4 people and 3 groups irenas sgoetz angelika12 alanrw dbk-lab Web2 yeast
  • A framework for scientific data modeling and automated software development
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1678-1684.
    by Rasmus H Fogh, Wayne Boucher, Anne Pajon, Tim J Stevens, T Bhat, John Westbrook, John M Ionides, Ernest D Laue
    posted to uml modeling bioinf by dalloliogm to the group splicing on 2007-03-30 15:19:46 as **** along with 1 person and 2 groups angelika12 Web2 yeast
  • Using the Unified Modelling Language (UML) to guide the systemic description of biological processes and systems.
    Biosystems, Vol. 75, No. 1-3. (July 2004), pp. 3-14.
    by M Roux-Rouquié, N Caritey, L Gaubert, C Rosenthal-Sabroux
    posted to uml modeling bioinformatics by dalloliogm to the group splicing on 2007-03-29 15:41:17 as **** along with 3 people and 3 groups irenas cedricboidin angelika12 dbk-lab Web2 yeast
  • UML as a cell and biochemistry modeling language.
    Biosystems, Vol. 80, No. 3. (June 2005), pp. 283-302.
    by K Webb, T White
    posted to uml modeling bioinformatics by dalloliogm to the group splicing on 2007-03-29 15:40:51 as **** along with 3 people and 5 groups wigelius carmaus angelika12 HCI-IHTE-TUT Web2 yeast dIEMoSIRIS MoSi-Rostock
  • The emerging Web 2.0 social software: an enabling suite of sociable technologies in health and health care education
    Health Information and Libraries Journal, Vol. 24, No. 1. (March 2007), pp. 2-23.
    by Kamel Boulos, N Maged, Wheeler, Steve
    posted to web_20 social_bookmarking by dalloliogm to the group splicing on 2007-03-26 15:50:49 as *** along with 24 people and 6 groups vickimlee cozytrony jyuh A_Olympia worksmarts avivagabriel ampms librarianjason giorgiobertin MedlibMaven teachingaging ach milena teenie0128 sila mscottfl shigakiwi hollyw mknteam lauracobus benfqt Ignatia mebiel Gaetan Philosophy_of_Information Blog_and_Wiki_Research Evidence-based-medicine Web2 yeast Health_Sciences_Librarians
  • Applying genetic programming to the prediction of alternative mRNA splice variants
    Genomics, Vol. 89, No. 4. (April 2007), pp. 471-479.
    by Ivana Vukusic, Sushma N Grellscheid, Thomas Wiehe
    posted to genetic_algorithms alternative_splicing by dalloliogm to the group splicing on 2007-03-26 10:18:46 as **** along with 1 person and 2 groups nsng Web2 yeast
  • Alternative Cancer Cures: "Unproven" or "Disproven"?
    CA Cancer J Clin, Vol. 54, No. 2. (1 March 2004), pp. 110-118.
    by Andrew Vickers
    posted to somatostatin molecularlab di_bella by dalloliogm to the group splicing on 2007-03-24 22:15:34 as *** along with 2 groups Web2 yeast
  • Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies.
    FEBS Lett, Vol. 487, No. 1. (Dec 2000), pp. 3-12.
    by J Souciet, M Aigle, F Artiguenave, G Blandin, Bolotin M Fukuhara, E Bon, P Brottier, S Casaregola, J de Montigny, B Dujon, P Durrens, C Gaillardin, A Lã©pingle, B Llorente, A Malpertuy, C Neuvã©glise, Ozier O Kalogã©ropoulos, S Potier, W Saurin, F Tekaia, Toffano C Nioche, Wã©solowski M Louvel, P Wincker, J Weissenbach
    posted to analysis ascomycota data dna evolution fungal genome genomics molecular phylogeny ribosomal rna sequence uploaded_yeast_signals by dalloliogm to the group splicing on 2007-03-16 15:02:36 as *** along with 2 groups Web2 yeast
  • Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes.
    FEMS Microbiol Lett, Vol. 216, No. 2. (Nov 2002), pp. 133-138.
    by Leda Cummings, Leigh Riley, Lori Black, Alexander Souvorov, Sergei Resenchuk, Ilya Dondoshansky, Tatiana Tatusova
    posted to acid alignment amino archaeal bacterial base classification databases fungal genome internet nucleic protein sequence software viral uploaded_yeast_signals by dalloliogm to the group splicing on 2007-03-16 15:02:35 as *** along with 2 groups Web2 yeast
  • Genomic exploration of the hemiascomycetous yeasts: 7. Saccharomyces servazzii.
    FEBS Lett, Vol. 487, No. 1. (Dec 2000), pp. 47-51.
    by S Casaregola, A Lã©pingle, E Bon, C Neuvã©glise, H Nguyen, F Artiguenave, P Wincker, C Gaillardin
    posted to acid amino analysis ascomycota cerevisiae data dna duplication fungal gene genome homology humans introns mitochondrial molecular nuclear plasmids proteins retroelements ribosomal saccharomyces sequence spliceosomes uploaded_yeast_signals by dalloliogm to the group splicing on 2007-03-16 15:02:35 as *** along with 2 groups Web2 yeast
  • Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.
    Nucleic Acids Res, Vol. 31, No. 4. (Feb 2003), pp. 1121-1135.
    by Elisabeth Bon, Serge Casaregola, Gaã«lle Blandin, Bertrand Llorente, Cã©cile Neuvã©glise, Martin Munsterkotter, Ulrich Guldener, Hans W Mewes, Jacques Van Helden, Bernard Dujon, Claude Gaillardin
    posted to acid amino cells conserved data eukaryotic evolution fungal genes homology introns molecular mycelium rna sequence splicing yeasts uploaded_yeast_signals by dalloliogm to the group splicing on 2007-03-16 15:02:34 as *** along with 2 groups Web2 yeast
  • Genomic exploration of the hemiascomycetous yeasts: 4. The genome of Saccharomyces cerevisiae revisited.
    FEBS Lett, Vol. 487, No. 1. (Dec 2000), pp. 31-36.
    by G Blandin, P Durrens, F Tekaia, M Aigle, Bolotin M Fukuhara, E Bon, S Casarã©gola, J de Montigny, C Gaillardin, A Lã©pingle, B Llorente, A Malpertuy, C Neuvã©glise, Ozier O Kalogeropoulos, A Perrin, S Potier, J Souciet, E Talla, Toffano C Nioche, Wã©solowski M Louvel, C Marck, B Dujon
    posted to alignment ascomycota cerevisiae chromosomes dna family frames fungal genes genome intergenic multigene open reading rna saccharomyces sequence transfer uploaded_yeast_signals by dalloliogm to the group splicing on 2007-03-16 15:02:33 as *** along with 2 groups Web2 yeast
  • Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).
    Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D374-D377.
    by Rama Balakrishnan, Karen R Christie, Maria C Costanzo, Kara Dolinski, Selina S Dwight, Stacia R Engel, Dianna G Fisk, Jodi E Hirschman, Eurie L Hong, Robert Nash, Rose Oughtred, Marek Skrzypek, Chandra L Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Anand Sethuraman, Shuai Weng, David Botstein, Michael J Cherry
    posted to acid amino analysis cerevisiae databases fungal genetic genome homology nucleic proteins saccharomyces sequence software uploaded_yeast_signals by dalloliogm to the group splicing on 2007-03-16 15:02:33 as *** along with 2 groups Web2 yeast
  • Contribution of Horizontal Gene Transfer to the Evolution of Saccharomyces cerevisiae
    Eukaryotic Cell, Vol. 4, No. 6. (1 June 2005), pp. 1102-1115.
    by Charles Hall, Sophie Brachat, Fred S Dietrich
    posted to gene horizontal transfer yeast by dalloliogm to the group splicing on 2007-03-16 15:01:34 as *** along with 1 person and 2 groups lp2 Web2 yeast
  • MAASE: an alternative splicing database designed for supporting splicing microarray applications.
    RNA, Vol. 11, No. 12. (2005), pp. 1767-76.
    by CL Zheng, YS Kwon, HR Li, K Zhang, Coutinho G Mansfield, C Yang, TM Nair, M Gribskov, XD Fu
    posted to alternative analysis biology computational database databases extramural genetic genome interface management messengerchemistry microarray nih research rna splicing support systems user-computer uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:55:02 as *** along with 2 groups Web2 yeast
  • Improved spliced alignment from an information theoretic approach.
    Bioinformatics, Vol. 22, No. 1. (Jan 2006), pp. 13-20.
    by Miao Zhang, Warren Gish
    posted to algorithms alternative animals biology caenorhabditis computational elegans exons expressed genetic govt humans languages m messenger mice models non-us oryza polymorphis programming research rna sativa sequence software species specificity splicing statistical support tags uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:55:01 as *** along with 2 groups Web2 yeast
  • The types and prevalence of alternative splice forms.
    Curr Opin Struct Biol, Vol. 16, No. 3. (Jun 2006), pp. 362-367.
    by Mihaela Zavolan, Erik van Nimwegen
    posted to alternative animals genes genetics humans protein proteins splicing structure tertiary variation uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:55:01 as *** along with 2 groups Web2 yeast
  • Evaluation of five ab initio gene prediction programs for the discovery of maize genes.
    Plant Mol Biol, Vol. 57, No. 3. (Feb 2005), pp. 445-460.
    by Hong Yao, Ling Guo, Yan Fu, Lisa A Borsuk, Tsui J Wen, David S Skibbe, Xiangqin Cui, Brian E Scheffler, Jun Cao, Scott J Emrich, Daniel A Ashlock, Patrick S Schnable
    posted to alternative comparative dna exons expression gene genes govt mays non-phs non-us of plant regulation reproducibility research results software splicing study support us zea uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:55:01 as *** along with 2 groups Web2 yeast
  • Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes.
    Nucleic Acids Res, Vol. 33, No. 16. (2005), pp. 5053-62.
    by J Wang, PJ Smith, AR Krainer, MQ Zhang
    posted to acid alternative analysis biology computational exons extramural govt humans messengerchemistry nih non-phs phs precursorschemistry proteinsgenetics proteinsmetabolism regulatory research ribonucleic rna rna-binding sequence sequences sites software splice splicing support us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:55:00 as *** along with 2 groups Web2 yeast
  • The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing.
    Genome Biol, Vol. 5, No. 12. (2004)
    by Bing B Wang, Volker Brendel
    posted to alternative arabidopsis databases dosage evolution gene genes genetic govt messenger molecular non-phs non-us nuclear plant repeat research rna sequences small splicing support tandem us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:55:00 as *** along with 2 groups Web2 yeast
  • An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers.
    Hum Mol Genet, Vol. 15, No. 16. (2006), pp. 2490-508.
    by PJ Smith, C Zhang, J Wang, SL Chew, MQ Zhang, AR Krainer
    posted to acid alternative amino base biological brca1 cells design elements extramural forecastingmethods frames genes govt hela homology humans models motifs nih non-phs nuclear nucleic open precursorsmetabolism proteinsgenetics reading regulatory research rna sequence splicinggenetics support theoretical transcriptional us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:59 as *** along with 2 groups Web2 yeast
  • GeneSplicer: a new computational method for splice site prediction.
    Nucleic Acids Res, Vol. 29, No. 5. (Mar 2001), pp. 1185-1190.
    by M Pertea, X Lin, SL Salzberg
    posted to algorithms alternative arabidopsis biology computational databases dna factual genes genome govt human humans non-phs phs plant research splicing support us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:59 as *** along with 2 groups Web2 yeast
  • [EDAS, databases of alternatively spliced human genes]
    Biofizika, Vol. 51, No. 4. (2006), pp. 589-92.
    by RN Nurtdinov, AD Neverov, DB Mal'ko, IA Kosmodem'ianskii, EO Ermakova, VE Ramenskii, AA Mironov, MS Gel'fand
    posted to abstract acid alternative biology computational databases english exonsgenetics expressed govt humans intronsgenetics non-us nucleic research sequence splicinggenetics support tags uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:59 as *** along with 2 groups Web2 yeast
  • A catalogue of splice junction sequences.
    Nucleic Acids Res, Vol. 10, No. 2. (Jan 1982), pp. 459-472.
    by SM Mount
    posted to acid animals base comparative genes govt huma non-phs ns nucleic repetitive research rna sequence sequences species specificity splicing study support us viral uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:58 as *** along with 2 groups Web2 yeast
  • The importance of being divisible by three in alternative splicing.
    Nucleic Acids Res, Vol. 33, No. 17. (2005), pp. 5574-82.
    by A Magen, G Ast
    posted to acid alternative animals base conserved databases dogs exons frames govt humans mice non-us nucleic protein rats reading research sequence splicing structure support tertiary uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:58 as *** along with 2 groups Web2 yeast
  • Our favourite alternative splice site.
    Biol Cell, Vol. 98, No. 5. (2006), pp. 317-21.
    by H Lerivray, A Mereau, HB Osborne
    posted to alternative and databases expressed expression gene geneticstandards govt information internet messenger non-us profiling research retrieval rna sequence splicing storage support tags uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:58 as *** along with 2 groups Web2 yeast
  • The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983.
    by Jeremy Leipzig, Pavel Pevzner, Steffen Heber
    posted to acid alignment alternative analysis computer databases dna genetic genome graphics human humans internet nucleic rna sequence sites software splice splicing transcription uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:58 as *** along with 2 groups Web2 yeast
  • HOLLYWOOD: a comparative relational database of alternative splicing.
    Nucleic Acids Res, Vol. 34, No. Database issue. (2006), pp. D56-62.
    by D Holste, G Huo, V Tung, CB Burge
    posted to acid alternative analysis animals computer databases exons extramural govt graphics humans integration interface internet mice nih non-phs nucleic regulatory research ribonucleic rna sequence sequences sites splice splicing support systems us user-computer uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:57 as *** along with 2 groups Web2 yeast
  • TassDB: a database of alternative tandem splice sites.
    Nucleic Acids Res (Nov 2006)
    by Michael Hiller, Swetlana Nikolajewa, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schuster, Rolf Backofen, Matthias Platzer
    posted to uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:57 as *** along with 2 groups Web2 yeast
  • Fast-Find: a novel computational approach to analyzing combinatorial motifs.
    BMC Bioinformatics, Vol. 7 (2006)
    by M Hamady, E Peden, R Knight, R Singh
    posted to acid algorithms amino and animals binding biologymethods complementarymetabolism computational databases dna drosophila expressed extramural genetic genome govt internet messengermetabolism motifs nih non-us polyadenylation protein proteinschemistry research rna rna-binding rnachemistry sensitivity sequence sites software specificity splicing support tags uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:57 as *** along with 2 groups Web2 yeast
  • RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (Jul 2004), pp. W187-W190.
    by William G Fairbrother, Gene W Yeo, Rufang Yeh, Paul Goldstein, Matthew Mawson, Phillip A Sharp, Christopher B Burge
    posted to acid analysis animals dna exons humans internet messenger mice precursors regulatory ribonucleic rna sequence sequences software splicing tetraodontiformes zebrafish uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:57 as *** along with 2 groups Web2 yeast
  • Predictive identification of exonic splicing enhancers in human genes.
    Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013.
    by William G Fairbrother, Ru F Yeh, Phillip A Sharp, Christopher B Burge
    posted to acid analysis biology complementary computational consensus databases dna exons genes genome govt human humans hypoxanthine introns mutation non-us nucleic oligonucleotides phosphoribosyltransferase phs point regulatory research rna sequence sequences splicing support us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:56 as *** along with 2 groups Web2 yeast
  • Single nucleotide polymorphism-based validation of exonic splicing enhancers.
    PLoS Biol, Vol. 2, No. 9. (Sep 2004)
    by William G Fairbrother, Dirk Holste, Christopher B Burge, Phillip A Sharp
    posted to acid alleles alternative amino animals cpg databases elements enhancer exons extramural genetic genetics govt humans islands models motifs mutation nih non-phs non-us nucleotide odds oligonucleotides pan phenotype phs polymorphism ratio research rna single splicing support techniques troglodytes us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:55 as *** along with 2 groups Web2 yeast
  • Human genomic sequences that inhibit splicing.
    Mol Cell Biol, Vol. 20, No. 18. (Sep 2000), pp. 6816-6825.
    by WG Fairbrother, LA Chasin
    posted to base data dna elements govt humans introns molecular phs research rna sequence splicing support transposable us uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:55 as *** along with 2 groups Web2 yeast
  • Genomic splice-site analysis reveals frequent alternative splicing close to the dominant splice site.
    RNA, Vol. 12, No. 12. (2006), pp. 2047-56.
    by Y Dou, Fox KL Walsh, PF Baldi, KJ Hertel
    posted to uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:55 as *** along with 2 groups Web2 yeast
  • ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (2006), pp. W440-3.
    by T Castrignano, R Rizzi, IG Talamo, PD De Meo, A Anselmo, P Bonizzoni, G Pesole
    posted to algorithms alignment alternative base genomics govt heterogeneous-nuclear humans interface internet introns isoformsgeneticsmetabolism messengerchemistry non-us protein research ribonucleoproteinsgenetics rna sequence sites software splice splicing support user-computer uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:54 as *** along with 2 groups Web2 yeast
  • ESEfinder: A web resource to identify exonic splicing enhancers.
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3568-71.
    by L Cartegni, J Wang, Z Zhu, MQ Zhang, AR Krainer
    posted to analysis base consensus elements enhancer exons genetics govt humans interface internet messengerchemistry mutation phs point precursorschemistrymetabolism proteinsmetabolism research rna rna-binding rnamethods sequence software splicing support us user-computer uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:53 as *** along with 2 groups Web2 yeast
  • Evaluation of gene structure prediction programs.
    Genomics, Vol. 34, No. 3. (Jun 1996), pp. 353-367.
    by M Burset, R Guigã³
    posted to alternative and animals biosynthesis comparative dna exons genes genetic govt humans information mathematics models non-us of phs pro probability protein pseudogenes reproducibility research results sensitivity software specificity splicing study support systems teins us vertebrates uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:52 as *** along with 2 groups Web2 yeast
  • A catalogue of splice junction and putative branch point sequences from plant introns.
    Nucleic Acids Res, Vol. 14, No. 24. (Dec 1986), pp. 9549-9559.
    by JW Brown
    posted to base comparative enzymes genes govt introns non-us plants proteins research rna sequence species specificity splicing study support uploaded_splicing by dalloliogm to the group splicing on 2007-03-16 14:54:51 as *** along with 2 groups Web2 yeast