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Group: steinmetzlab - library [95 articles]

グループ steinmetzlab のメンバーが最近追加した論文の一覧
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
  • High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 692-696.
    by J Allen, HM Davey, D Broadhurst, JK Heald, JJ Rowland, SG Oliver, DB Kell
  • A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
    Nat Biotechnol, Vol. 19, No. 1. (January 2001), pp. 45-50.
    by LM Raamsdonk, B Teusink, D Broadhurst, N Zhang, A Hayes, MC Walsh, JA Berden, KM Brindle, DB Kell, JJ Rowland, HV Westerhoff, K van Dam, SG Oliver
  • The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1465. (29 January 2006), pp. 147-161.
    by JL Griffin
    posted to systems review metabolic_profiling genomics by raiyar to the group steinmetzlab on 2007-05-14 17:04:23 as *****
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
  • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
    BMC Bioinformatics, Vol. 1 (2000)
    by JS Edwards, BO Palsson
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
  • Metabolic modeling of microbial strains in silico.
    Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186.
    by MW Covert, CH Schilling, I Famili, JS Edwards, II Goryanin, E Selkov, BO Palsson
  • Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.
    J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11683-11695.
    by I Thiele, ND Price, TD Vo, BØ Palsson
    posted to network model mitochondria metabolic human flux disease by raiyar to the group steinmetzlab on 2007-01-24 17:00:01 as *****
  • Mitochondria: dynamic organelles in disease, aging, and development.
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1241-1252.
    by DC Chan
    posted to review mitochondria human disease development aging by raiyar to the group steinmetzlab on 2007-01-09 21:49:09 as ***** along with 1 person inbetweener
  • Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast.
    J Exp Biol, Vol. 201, No. Pt 8. (April 1998), pp. 1177-1195.
    by KE Kwast, PV Burke, RO Poyton
    posted to yeast transcription respiration regulation mitochondria by raiyar to the group steinmetzlab on 2007-06-27 07:16:59 as ****
  • Building the power house: recent advances in mitochondrial studies through proteomics and systems biology.
    Am J Physiol Cell Physiol, Vol. 292, No. 1. (January 2007)
    by TD Vo, BO Palsson
  • Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data.
    J Biol Chem, Vol. 279, No. 38. (17 September 2004), pp. 39532-39540.
    by TD Vo, HJ Greenberg, BO Palsson
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
  • Abnormal mitochondrial respiration in failed human myocardium.
    J Mol Cell Cardiol, Vol. 32, No. 12. (December 2000), pp. 2361-2367.
    by VG Sharov, AV Todor, N Silverman, S Goldstein, HN Sabbah
    posted to technique respiration mitochondria human disease by raiyar to the group steinmetzlab on 2007-04-06 15:16:17 as ****
  • In vitro assessment of pancreatic islet vitality by oxymetry.
    Transplant Proc, Vol. 37, No. 8. (October 2005), pp. 3454-3456.
    posted to technique respiration mitochondria disease by raiyar to the group steinmetzlab on 2007-04-06 15:07:25 as ****
  • A respirometer for investigating oxidative cell metabolism: toward optimization of respiratory studies.
    Anal Biochem, Vol. 218, No. 2. (1 May 1994), pp. 338-342.
    by T Haller, M Ortner, E Gnaiger
    posted to technique respiration mitochondria flux diauxic by raiyar to the group steinmetzlab on 2007-04-06 15:05:15 as ****
  • Towards a molecular understanding of adaptive thermogenesis.
    Nature, Vol. 404, No. 6778. (6 April 2000), pp. 652-660.
    by BB Lowell, BM Spiegelman
    posted to review mitochondria genetic disease by raiyar to the group steinmetzlab on 2007-04-06 14:48:13 as ****
  • Meet the human metabolome
    Nature, Vol. 446, No. 7131. (28 February 2007), pp. 8-8.
    by Helen Pearson
    posted to model metabolic human by raiyar to the group steinmetzlab on 2007-03-31 21:39:44 as **** along with 1 person jyuh
  • Isotopomer analysis of myocardial substrate metabolism: a systems biology approach.
    Biotechnol Bioeng, Vol. 95, No. 5. (5 December 2006), pp. 972-983.
    by TD Vo, BO Palsson
    posted to systems respiration model mitochondria metabolic bioinformatics by raiyar to the group steinmetzlab on 2007-03-21 13:06:49 as ****
  • Temperature-sensitive yeast mutants defective in mitochondrial inheritance.
    J Cell Biol, Vol. 111, No. 3. (September 1990), pp. 967-976.
    by SJ McConnell, LC Stewart, A Talin, MP Yaffe
    posted to yeast ts mutant mitochondria by raiyar to the group steinmetzlab on 2007-01-22 16:31:10 as ****
  • MitoP2: the mitochondrial proteome database--now including mouse data.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    posted to yeast parts-list model mitochondria human by raiyar to the group steinmetzlab on 2007-01-22 12:31:36 as ****
  • Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae.
    Mol Biol Cell, Vol. 13, No. 3. (March 2002), pp. 847-853.
    posted to yeast respiration mitochondria genomics deletion by raiyar to the group steinmetzlab on 2007-01-19 14:33:40 as ****
  • 'Omics' of the mitochondrion
    Nat Biotech, Vol. 21, No. 3. (March 2003), pp. 239-240.
    by Benedikt Westermann, Walter Neupert
    posted to mitochondria human ht genomics by raiyar to the group steinmetzlab on 2007-01-19 13:50:49 as ****
  • Chemogenomic profiling: identifying the functional interactions of small molecules in yeast.
    Proc Natl Acad Sci U S A, Vol. 101, No. 3. (20 January 2004), pp. 793-798.
    by G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, AM Chu, MI Jordan, AP Arkin, RW Davis
    posted to yeast target ht genomics compound by raiyar to the group steinmetzlab on 2007-01-19 11:36:51 as **** along with 3 people pcahan1 balajis laureniezhang
  • Genomic profiling of drug sensitivities via induced haploinsufficiency
    Nature Genetics, Vol. 21, No. 3. (March 1999), pp. 278-283.
    by G Giaever, DD Shoemaker, TW Jones, H Liang, EA Winzeler, A Astromoff, RW Davis
    posted to yeast target ht genomics deletion compound array by raiyar to the group steinmetzlab on 2007-01-19 11:32:35 as ****
  • Discovering Modes of Action for Therapeutic Compounds Using a Genome-Wide Screen of Yeast Heterozygotes
    Cell, Vol. 116, No. 1. (9 January 2004), pp. 121-137.
    by Pek Y Lum, Christopher D Armour, Sergey B Stepaniants, Guy Cavet, Maria K Wolf, Scott J Butler, Jerald C Hinshaw, Philippe Garnier, Glenn D Prestwich, Amy Leonardson
    posted to yeast target ht genomics deletion compound barcode array by raiyar to the group steinmetzlab on 2007-01-19 11:28:44 as ****
  • Revealing Complex Traits with Small Molecules and Naturally Recombinant Yeast Strains
    Chemistry & Biology, Vol. 13, No. 3. (March 2006), pp. 319-327.
    by Ethan O Perlstein, Douglas M Ruderfer, Gopal Ramachandran, Stephen J Haggarty, Leonid Kruglyak, Stuart L Schreiber
    posted to yeast system compound by raiyar to the group steinmetzlab on 2007-01-12 15:07:28 as **** along with 1 person juokcho
  • Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast.
    Cell, Vol. 126, No. 3. (11 August 2006), pp. 611-625.
    by AB Parsons, A Lopez, IE Givoni, DE Williams, CA Gray, J Porter, G Chua, R Sopko, RL Brost, CH Ho, J Wang, T Ketela, C Brenner, JA Brill, GE Fernandez, TC Lorenz, GS Payne, S Ishihara, Y Ohya, B Andrews, TR Hughes, BJ Frey, TR Graham, RJ Andersen, C Boone
    posted to yeast mutant genomics genetic compound by raiyar to the group steinmetzlab on 2007-01-12 14:16:33 as **** along with 4 people aswin heb laureniezhang jyuh
  • Systematic identification of human mitochondrial disease genes through integrative genomics
    Nature Genetics, Vol. 38, No. 5. (02 April 2006), pp. 576-582.
    by Sarah Calvo, Mohit Jain, Xiaohui Xie, Sunil A Sheth, Betty Chang, Olga A Goldberger, Antonella Spinazzola, Massimo Zeviani, Steven A Carr, Vamsi K Mootha
  • Comprehensive association testing of common mitochondrial DNA variation in metabolic disease.
    Am J Hum Genet, Vol. 79, No. 1. (July 2006), pp. 54-61.
    by R Saxena, PI de Bakker, K Singer, V Mootha, N Burtt, JN Hirschhorn, D Gaudet, B Isomaa, MJ Daly, L Groop, KG Ardlie, D Altshuler
    posted to variant mtdna mitochondria metabolic disease by raiyar to the group steinmetzlab on 2007-01-09 21:54:24 as **** along with 1 person candypmcg
  • Genetic Dissection of Transcriptional Regulation in Budding Yeast
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755.
    by Rachel B Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak
  • Genetical genomics analysis of a yeast segregant population for transcription network inference.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 533-542.
    by N Bing, I Hoeschele
    posted to yeast tacqa regulation qtl network expression by raiyar to the group steinmetzlab on 2007-08-14 21:36:24 as *** along with 2 people natstreet caseybrown
  • Genomic expression programs in the response of yeast cells to environmental changes.
    Mol Biol Cell, Vol. 11, No. 12. (December 2000), pp. 4241-4257.
    by AP Gasch, PT Spellman, CM Kao, O Carmel-Harel, MB Eisen, G Storz, D Botstein, PO Brown
  • Functional profiling of the Saccharomyces cerevisiae genome.
    Nature, Vol. 418, No. 6896. (25 July 2002), pp. 387-391.
  • RNA interference technologies and their use in cancer research.
    Curr Opin Oncol, Vol. 19, No. 1. (January 2007), pp. 50-54.
    posted to rnai review haploinsufficiency disease cancer by raiyar to the group steinmetzlab on 2007-06-01 17:17:43 as ***
  • RNA-templated DNA repair
    Nature (11 April 2007)
    by Francesca Storici, Katarzyna Bebenek, Thomas A Kunkel, Dmitry A Gordenin, Michael A Resnick
    posted to transcription rec interest by raiyar to the group steinmetzlab on 2007-05-20 17:18:05 as *** along with 3 people austin saru bpcusack
  • Multiscale Modeling of Cardiac Cellular Energetics
    Ann NY Acad Sci, Vol. 1047, No. 1. (1 June 2005), pp. 395-426.
    by James B Bassingthwaighte, Howard J Chizeck, Les E Atlas, Hong Qian
    posted to respiration model mitochondria bioinformatics by raiyar to the group steinmetzlab on 2007-05-13 13:59:08 as ***
  • Mitochondrial fragmentation in apoptosis.
    Trends Cell Biol, Vol. 17, No. 1. (January 2007), pp. 6-12.
    by D Arnoult
    posted to review mitochondria apoptosis by raiyar to the group steinmetzlab on 2007-04-06 14:59:50 as ***
  • Mitochondrial differentiation in kinetoplastid protozoa: a plethora of RNA controls.
    Differentiation, Vol. 71, No. 9-10. (December 2003), pp. 549-556.
    posted to transcription review respiration regulation mitochondria by raiyar to the group steinmetzlab on 2007-04-06 14:51:24 as ***
  • Uncovering transcriptional regulation of metabolism by using metabolic network topology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689.
    by KR Patil, J Nielsen
  • The proteome of Saccharomyces cerevisiae mitochondria.
    Proc Natl Acad Sci U S A, Vol. 100, No. 23. (11 November 2003), pp. 13207-13212.
    posted to yeast systems ms mitochondria ht by raiyar to the group steinmetzlab on 2007-01-22 17:43:20 as ***
  • Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147.
  • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183.
  • Computational approaches for the prediction of protein function in the mitochondrion.
    Am J Physiol Cell Physiol, Vol. 291, No. 6. (December 2006)
    posted to prediction mitochondria by raiyar to the group steinmetzlab on 2007-01-22 13:03:30 as ***
  • Genome-wide analysis of mRNAs targeted to yeast mitochondria.
    EMBO Rep, Vol. 3, No. 2. (February 2002), pp. 159-164.
    posted to yeast mitochondria localization genomics by raiyar to the group steinmetzlab on 2007-01-19 15:32:11 as ***
  • The yeast mitochondrial proteome, a study of fermentative and respiratory growth.
    J Biol Chem, Vol. 279, No. 6. (6 February 2004), pp. 3956-3979.
    posted to yeast mitochondria ht by raiyar to the group steinmetzlab on 2007-01-19 14:46:41 as ***
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