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Group: steinmetzlab - library [95 articles]

グループ steinmetzlab のメンバーが最近追加した論文の一覧
  • Maximizing the potential of functional genomics.
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 190-201.
    by LM Steinmetz, RW Davis
    posted to review integration genomics bioinformatics by raiyar to the group steinmetzlab on 2007-09-12 21:26:03 as read
  • Genetic Dissection of Transcriptional Regulation in Budding Yeast
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755.
    by Rachel B Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak
    posted to yeast tacqa qtl expression by raiyar to the group steinmetzlab on 2007-08-14 22:04:32 as *** along with 9 people and 2 groups RMGraze JAShapiro brant dpollard adepace oannes lp2 jo_davies mimulus_99 EisenLab Regulomics_UCHSC
  • Genetical genomics analysis of a yeast segregant population for transcription network inference.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 533-542.
    by N Bing, I Hoeschele
    posted to yeast tacqa regulation qtl network expression by raiyar to the group steinmetzlab on 2007-08-14 21:36:24 as *** along with 2 people natstreet caseybrown
  • Genomic expression programs in the response of yeast cells to environmental changes.
    Mol Biol Cell, Vol. 11, No. 12. (December 2000), pp. 4241-4257.
    by AP Gasch, PT Spellman, CM Kao, O Carmel-Harel, MB Eisen, G Storz, D Botstein, PO Brown
    posted to yeast genomics expression condition array by raiyar to the group steinmetzlab on 2007-08-10 12:40:19 as *** along with 4 people and 1 group tvdbulck lfriedl lesander roys kdl
  • Functional profiling of the Saccharomyces cerevisiae genome.
    Nature, Vol. 418, No. 6896. (25 July 2002), pp. 387-391.
    by G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, A Lucau-Danila, K Anderson, B André, AP Arkin, A Astromoff, M El-Bakkoury, R Bangham, R Benito, S Brachat, S Campanaro, M Curtiss, K Davis, A Deutschbauer, KD Entian, P Flaherty, F Foury, DJ Garfinkel, M Gerstein, D Gotte, U Güldener, JH Hegemann, S Hempel, Z Herman, DF Jaramillo, DE Kelly, SL Kelly, P Kötter, D LaBonte, DC Lamb, N Lan, H Liang, H Liao, L Liu, C Luo, M Lussier, R Mao, P Menard, SL Ooi, JL Revuelta, CJ Roberts, M Rose, P Ross-Macdonald, B Scherens, G Schimmack, B Shafer, DD Shoemaker, S Sookhai-Mahadeo, RK Storms, JN Strathern, G Valle, M Voet, G Volckaert, CY Wang, TR Ward, J Wilhelmy, EA Winzeler, Y Yang, G Yen, E Youngman, K Yu, H Bussey, JD Boeke, M Snyder, P Philippsen, RW Davis, M Johnston
    posted to yeast mutant ht genomics deletion by raiyar to the group steinmetzlab on 2007-08-10 09:05:47 as *** along with 11 people and 1 group dylanwalker chasmand pcahan1 lfriedl balajis rebeccahainess nirfriedman koller cjeans jiny hplatero kdl
  • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    PNAS, Vol. 104, No. 31. (31 July 2007), pp. 12825-12830.
    by Wu Wei, John H Mccusker, Richard W Hyman, Ted Jones, Ye Ning, Zhiwei Cao, Zhenglong Gu, Dan Bruno, Molly Miranda, Michelle Nguyen, Julie Wilhelmy, Caridad Komp, Raquel Tamse, Xiaojing Wang, Peilin Jia, Philippe Luedi, Peter J Oefner, Lior David, Fred S Dietrich, Yixue Li, Ronald W Davis, Lars M Steinmetz
    posted to yjm789 yeast genomics bioinformatics by raiyar to the group steinmetzlab on 2007-08-02 16:15:02 as read along with 3 people and 1 group lesander lp2 dmc Durbin group
  • A 'natural' mutation in Saccharomyces cerevisiae strains derived from S288c affects the complex regulatory gene HAP1 (CYP1).
    Curr Genet, Vol. 36, No. 4. (October 1999), pp. 195-200.
    by M Gaisne, AM Bécam, J Verdière, CJ Herbert
    posted to yeast transcription respiration regulation mutant mitochondria genetic defect by raiyar to the group steinmetzlab on 2007-06-28 05:04:20 as read
  • Network analysis of FDA approved drugs and their targets.
    Mt Sinai J Med, Vol. 74, No. 1. (April 2007), pp. 27-32.
    by A Ma'ayan, SL Jenkins, J Goldfarb, R Iyengar
    posted to network compound bioinformatics analysis by raiyar to the group steinmetzlab on 2007-06-27 07:18:07 as ** along with 1 person jyuh
  • Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast.
    J Exp Biol, Vol. 201, No. Pt 8. (April 1998), pp. 1177-1195.
    by KE Kwast, PV Burke, RO Poyton
    posted to yeast transcription respiration regulation mitochondria by raiyar to the group steinmetzlab on 2007-06-27 07:16:59 as ****
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to yeast technique prediction network model metabolic_profiling deletion bioinformatics by raiyar to the group steinmetzlab on 2007-06-08 09:33:01 as ***** along with 1 person alexg
  • RNA interference technologies and their use in cancer research.
    Curr Opin Oncol, Vol. 19, No. 1. (January 2007), pp. 50-54.
    by A Gaither, V Iourgenko
    posted to rnai review haploinsufficiency disease cancer by raiyar to the group steinmetzlab on 2007-06-01 17:17:43 as ***
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to systems statistics network integration genomics disease bioinformatics analysis by raiyar to the group steinmetzlab on 2007-05-27 00:38:43 as read along with 24 people and 7 groups yaredo shoshin carlk mingzhi Yanno jyuh aalibes cannin kuhn jfr yas balicea neveaire bundschu grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shikin nolodie GomezLab Biostatistics Computational-Genomics Bioinformatics Neuroscience ic4 generif_paper
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to yeast systems proteomics network model integration genomics expression deletion bioinformatics array analysis by raiyar to the group steinmetzlab on 2007-05-26 18:25:14 as ***** along with 10 people and 2 groups thomaskelder shikin snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek GeneGo Bioinformatics
  • RNA-templated DNA repair
    Nature (11 April 2007)
    by Francesca Storici, Katarzyna Bebenek, Thomas A Kunkel, Dmitry A Gordenin, Michael A Resnick
    posted to transcription rec interest by raiyar to the group steinmetzlab on 2007-05-20 17:18:05 as *** along with 2 people austin saru
  • High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 692-696.
    by J Allen, HM Davey, D Broadhurst, JK Heald, JJ Rowland, SG Oliver, DB Kell
    posted to yeast systems metabolic_profiling integration genomics expression deletion defect bioinformatics analysis by raiyar to the group steinmetzlab on 2007-05-18 16:06:54 as ***** along with 3 people and 2 groups dbk irenas katerinakal streptomyces dbk-lab
  • A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
    Nat Biotechnol, Vol. 19, No. 1. (January 2001), pp. 45-50.
    by LM Raamsdonk, B Teusink, D Broadhurst, N Zhang, A Hayes, MC Walsh, JA Berden, KM Brindle, DB Kell, JJ Rowland, HV Westerhoff, K van Dam, SG Oliver
    posted to yeast metabolic_profiling integration ht deletion defect bioinformatics analysis by raiyar to the group steinmetzlab on 2007-05-18 16:05:35 as ***** along with 5 people and 2 groups JeremyZucker dbk irenas dullhunk katerinakal streptomyces dbk-lab
  • The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1465. (29 January 2006), pp. 147-161.
    by JL Griffin
    posted to systems review metabolic_profiling genomics by raiyar to the group steinmetzlab on 2007-05-14 17:04:23 as *****
  • Building the power house: recent advances in mitochondrial studies through proteomics and systems biology.
    Am J Physiol Cell Physiol, Vol. 292, No. 1. (January 2007)
    by TD Vo, BO Palsson
    posted to systems review proteomics mitochondria bioinformatics by raiyar to the group steinmetzlab on 2007-05-14 16:54:33 as **** along with 2 people jyuh kristen
  • Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data.
    J Biol Chem, Vol. 279, No. 38. (17 September 2004), pp. 39532-39540.
    by TD Vo, HJ Greenberg, BO Palsson
    posted to systems mitochondria metabolic_profiling human ht flux bioinformatics by raiyar to the group steinmetzlab on 2007-05-14 14:18:48 as **** along with 1 person kristen
  • The genetic code is nearly optimal for allowing additional information within protein-coding sequences.
    Genome Res (9 February 2007)
    by Shalev Itzkovitz, Uri Alon
    posted to interest genetic bioinformatics by raiyar to the group steinmetzlab on 2007-05-14 08:57:03 as ** along with 8 people and 2 groups bpcusack gpalidwor madhadron msierk grahamc raylim Minty gwenknight Bioinformatics ParkinsonLab_at_MaRS
  • Multiscale Modeling of Cardiac Cellular Energetics
    Ann NY Acad Sci, Vol. 1047, No. 1. (1 June 2005), pp. 395-426.
    by James B Bassingthwaighte, Howard J Chizeck, Les E Atlas, Hong Qian
    posted to respiration model mitochondria bioinformatics by raiyar to the group steinmetzlab on 2007-05-13 13:59:08 as ***
  • XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.
    Anal Chem, Vol. 78, No. 3. (1 February 2006), pp. 779-787.
    by CA Smith, EJ Want, G O'Maille, R Abagyan, G Siuzdak
    posted to localization genomics by raiyar to the group steinmetzlab on 2007-05-04 14:34:15 as ** along with 1 person kentsis
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to systems review prediction network model metabolic_profiling metabolic genomics by raiyar to the group steinmetzlab on 2007-05-02 12:44:16 as ** along with 8 people and 1 group alanrw shikin irenas nicklynch alexg dullhunk mhucka fishtank GeneGo
  • Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease.
    Cancer Res, Vol. 65, No. 8. (15 April 2005), pp. 3081-3091.
    by B Lin, JT White, W Lu, T Xie, AG Utleg, X Yan, EC Yi, P Shannon, I Khrebtukova, PH Lange, DR Goodlett, D Zhou, TJ Vasicek, L Hood
    posted to systems network ht genomics example disease analysis by raiyar to the group steinmetzlab on 2007-04-29 11:20:26 as **
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
    posted to systems network mutant metabolic_profiling ht flux defect by raiyar to the group steinmetzlab on 2007-04-27 13:34:19 as **** along with 4 people IgorG jjray dylan77 ytoya
  • The need for standards, not guidelines, in biological data reporting and sharing
    Nature Biotechnology, Vol. 24, No. 11., pp. 1369-1373.
    by Lyle D Burgoon
    posted to review interest integration bioinformatics by raiyar to the group steinmetzlab on 2007-04-27 11:15:24 as ** along with 2 people jfr mhucka
  • Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 514-515.
    by Henning Schmidt, Mats Jirstrand
    posted to technique systems network model bioinformatics by raiyar to the group steinmetzlab on 2007-04-26 09:40:20 as ** along with 2 people and 1 group julius jrbanga SysbioMPI-TCells
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to technique systems statistics prediction network model metabolic flux bioinformatics by raiyar to the group steinmetzlab on 2007-04-23 16:54:29 as **** along with 4 people jyuh wnpx fishtank jrbanga
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
    posted to technique systems review prediction network model metabolic bioinformatics by raiyar to the group steinmetzlab on 2007-04-23 15:48:44 as **** along with 2 people wnpx fishtank
  • Abnormal mitochondrial respiration in failed human myocardium.
    J Mol Cell Cardiol, Vol. 32, No. 12. (December 2000), pp. 2361-2367.
    by VG Sharov, AV Todor, N Silverman, S Goldstein, HN Sabbah
    posted to technique respiration mitochondria human disease by raiyar to the group steinmetzlab on 2007-04-06 15:16:17 as ****
  • In vitro assessment of pancreatic islet vitality by oxymetry.
    Transplant Proc, Vol. 37, No. 8. (October 2005), pp. 3454-3456.
    by K Zacharovova, Z Berkova, T Spacek, J Kriz, E Dovolilova, P Girman, T Koblas, P Jezek, F Saudek
    posted to technique respiration mitochondria disease by raiyar to the group steinmetzlab on 2007-04-06 15:07:25 as ****
  • A respirometer for investigating oxidative cell metabolism: toward optimization of respiratory studies.
    Anal Biochem, Vol. 218, No. 2. (1 May 1994), pp. 338-342.
    by T Haller, M Ortner, E Gnaiger
    posted to technique respiration mitochondria flux diauxic by raiyar to the group steinmetzlab on 2007-04-06 15:05:15 as ****
  • Mitochondrial fragmentation in apoptosis.
    Trends Cell Biol, Vol. 17, No. 1. (January 2007), pp. 6-12.
    by D Arnoult
    posted to review mitochondria apoptosis by raiyar to the group steinmetzlab on 2007-04-06 14:59:50 as ***
  • Mitochondrial differentiation in kinetoplastid protozoa: a plethora of RNA controls.
    Differentiation, Vol. 71, No. 9-10. (December 2003), pp. 549-556.
    by S Adhya, S Basu, SN Bhattacharyya, S Chatterjee, G Dhar, S Goswami, S Ghosh, P Home, B Mahata, G Tripathi
    posted to transcription review respiration regulation mitochondria by raiyar to the group steinmetzlab on 2007-04-06 14:51:24 as ***
  • Towards a molecular understanding of adaptive thermogenesis.
    Nature, Vol. 404, No. 6778. (6 April 2000), pp. 652-660.
    by BB Lowell, BM Spiegelman
    posted to review mitochondria genetic disease by raiyar to the group steinmetzlab on 2007-04-06 14:48:13 as ****
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
    posted to yeast network mutant model metabolic by raiyar to the group steinmetzlab on 2007-04-03 16:35:12 as ***** along with 7 people jiny hryk tmmurali koller cjeans patrycja_missiuro edwardmorrissey
  • The mitochondrial bottleneck occurs without reduction of mtDNA content in female mouse germ cells
    Nature Genetics, Vol. 39, No. 3. (11 February 2007), pp. 386-390.
    by Liqin Cao, Hiroshi Shitara, Takuro Horii, Yasumitsu Nagao, Hiroshi Imai, Kuniya Abe, Takahiko Hara, Jun-Ichi Hayashi, Hiromichi Yonekawa
    posted to mitochondria interest by raiyar to the group steinmetzlab on 2007-03-31 21:40:47 as ** along with 1 person usagi-kirin
  • Meet the human metabolome
    Nature, Vol. 446, No. 7131. (28 February 2007), pp. 8-8.
    by Helen Pearson
    posted to model metabolic human by raiyar to the group steinmetzlab on 2007-03-31 21:39:44 as **** along with 1 person jyuh
  • Uncovering transcriptional regulation of metabolism by using metabolic network topology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689.
    by KR Patil, J Nielsen
    posted to transcription regulation network model metabolic bioinformatics by raiyar to the group steinmetzlab on 2007-03-22 12:52:55 as *** along with 1 person alexg
  • Isotopomer analysis of myocardial substrate metabolism: a systems biology approach.
    Biotechnol Bioeng, Vol. 95, No. 5. (5 December 2006), pp. 972-983.
    by TD Vo, BO Palsson
    posted to systems respiration model mitochondria metabolic bioinformatics by raiyar to the group steinmetzlab on 2007-03-21 13:06:49 as ****
  • Systems analysis of energy metabolism elucidates the affected respiratory chain complex in Leigh's syndrome
    Molecular Genetics and Metabolism, Vol. In Press, Corrected Proof
    by Thuy D Vo, Paul, Bernhard O Palsson
    posted to systems network model metabolic disease bioinformatics by raiyar to the group steinmetzlab on 2007-03-21 12:53:19 as read
  • Superoxide dismutase activity is essential for stationary phase survival in Saccharomyces cerevisiae. Mitochondrial production of toxic oxygen species in vivo.
    J Biol Chem, Vol. 271, No. 21. (24 May 1996), pp. 12275-12280.
    by VD Longo, EB Gralla, JS Valentine
    posted to defect deletion mitochondria mutant yeast by raiyar to the group steinmetzlab on 2007-02-21 13:07:57 as **
  • Null mutants of Saccharomyces cerevisiae Cu,Zn superoxide dismutase: characterization and spontaneous mutation rates.
    J Bacteriol, Vol. 173, No. 18. (September 1991), pp. 5918-5920.
    by EB Gralla, JS Valentine
    posted to mutant yeast by raiyar to the group steinmetzlab on 2007-02-21 13:07:38 as **
  • Advances in measuring lifespan in the yeast Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A, Vol. 102, No. 2. (11 January 2005), pp. 402-406.
    by N Minois, M Frajnt, C Wilson, JW Vaupel
    posted to yeast by raiyar to the group steinmetzlab on 2007-02-21 13:07:12 as **
  • Towards multidimensional genome annotation
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 130-141.
    by Jennifer L Reed, Iman Famili, Ines Thiele, Bernhard O Palsson
    posted to genomics integration interest by raiyar to the group steinmetzlab on 2007-02-21 13:05:45 as ** along with 10 people and 3 groups jyuh jfr balajis eweaver dchughes cmm massivemayhem wenhan zwang lylu FAB-lab G4ID Genetics-of-Gambling
  • Key biology databases go wiki
    Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691.
    by Jim Giles
    posted to bioinformatics interest by raiyar to the group steinmetzlab on 2007-02-15 10:57:53 as ** along with 9 people and 5 groups jyuh marcius eweaver kehan grahamc leechuck PunkRock barriot mircea biodiversity_conservation Bioinformatics BioinfoCIPF SGU-CIPF GrassBase
  • Global reconstruction of the human metabolic network based on genomic and bibliomic data.
    Proc Natl Acad Sci U S A (31 January 2007)
    by Natalie C C Duarte, Scott A A Becker, Neema Jamshidi, Ines Thiele, Monica L L Mo, Thuy D D Vo, Rohith Srivas, Bernhard O O Palsson
    posted to systems model mitochondria metabolic human genomics flux by raiyar to the group steinmetzlab on 2007-02-06 08:42:32 as read along with 4 people jyuh balajis alexg noby
  • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
    BMC Bioinformatics, Vol. 1 (2000)
    by JS Edwards, BO Palsson
    posted to parts-list network mutant model genes flux deletion bioinformatics analysis by raiyar to the group steinmetzlab on 2007-01-25 11:29:42 as ***** along with 1 person and 1 group icases TNT
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to systems regulation network model ht by raiyar to the group steinmetzlab on 2007-01-25 10:42:56 as ***** along with 5 people and 1 group JeremyZucker Retchless lfriedl RMGraze alexg kdl
  • Metabolic modeling of microbial strains in silico.
    Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186.
    by MW Covert, CH Schilling, I Famili, JS Edwards, II Goryanin, E Selkov, BO Palsson
    posted to systems review network model metabolic integration flux bioinformatics by raiyar to the group steinmetzlab on 2007-01-24 17:05:10 as ***** along with 1 person and 1 group icases TNT
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