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Group: SGU-CIPF - with tag rna [213 articles]

グループ SGU-CIPF のメンバーが最近追加した論文の一覧 with tag rna
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to structure_prediction rna ab-initio by marcius to the group SGU-CIPF on 2007-09-01 10:46:02 as ** along with 6 people and 1 group reyez jwm eckart_bindewald zwang physics Ema BioinfoCIPF
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to structure rna review experimental by marcius to the group SGU-CIPF on 2007-06-12 12:56:46 as ** along with 3 people and 1 group penka emidio_capriotti debatebob BioinfoCIPF
  • RNA conformational classes.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677.
    by B Schneider, Z Morávek, HM Berman
    posted to rotamers rna classification biophysics by marcius to the group SGU-CIPF on 2007-06-12 12:55:21 as ** along with 1 person and 1 group emidio_capriotti BioinfoCIPF
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to rna evolution by marcius to the group SGU-CIPF on 2007-06-12 12:54:21 as ** along with 5 people and 2 groups eckart_bindewald balicea penka i000 cjeans BioinfoCIPF YY1
  • RNAbor: a web server for RNA structural neighbors.
    Nucleic Acids Res (25 May 2007)
    by Eva Freyhult, Vincent Moulton, Peter Clote
    posted to server sequence-structure secondary_structure rna by marcius to the group SGU-CIPF on 2007-06-04 10:14:23 as ** along with 2 people and 1 group evaf sebastien_vigneau BioinfoCIPF
  • RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Bioinformatics (30 May 2007)
    by Xing Xu, Yongmei Ji, Gary D D Stormo
    posted to structure_alignment rna by marcius to the group SGU-CIPF on 2007-06-04 10:11:38 as ** along with 1 person and 2 groups cjeans Bioinformatics BioinfoCIPF
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to clustering rna secondary_structure structure_alignment by marcius to the group SGU-CIPF on 2007-03-01 12:29:48 as ** along with 7 people and 1 group eckart_bindewald eweaver ppgardne ilh zwang dunnp zhouyu BioinfoCIPF
  • The interaction networks of structured RNAs
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604.
    by A Lescoute, E Westhof
    posted to interaction rna secondary_structure by marcius to the group SGU-CIPF on 2007-01-03 13:00:44 as ** along with 6 people and 1 group austin reyez jennifermbui jarasch debatebob ankur_iitg BioinfoCIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to classification review rna by marcius to the group SGU-CIPF on 2007-01-03 12:59:57 as ** along with 11 people and 4 groups jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF DictyosteliumGroup GIG
  • SCOR: a Structural Classification of RNA database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394.
    by PS Klosterman, M Tamura, SR Holbrook, SE Brenner
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-12-21 14:21:00 as ** along with 1 person and 1 group debatebob BioinfoCIPF
  • RNA structure: the long and the short of it.
    Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308.
    by SR Holbrook
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-11-29 12:55:28 as ** along with 2 people and 1 group eckart_bindewald debatebob BioinfoCIPF
  • An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
    Comput Biol Chem, Vol. 30, No. 1. (February 2006), pp. 72-76.
    by H Liu, D Xu, J Shao, Y Wang
    posted to algorithms rna secondary_structure by marcius to the group SGU-CIPF on 2006-11-16 17:44:25 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • ProteinRNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2746-2752.
    by N Morozova, J Allers, Y Shamoo
    posted to bioinformatics protein_interactions rna algorithms by marcius to the group SGU-CIPF on 2006-11-16 09:29:09 as ** along with 1 group BioinfoCIPF
  • Mining frequent stem patterns from unaligned RNA sequences.
    Bioinformatics (14 August 2006)
    by Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
    posted to bioinformatics rna secondary_structure by marcius to the group SGU-CIPF on 2006-11-01 14:13:15 as ** along with 5 people and 2 groups tardigrade andersbj samal dquest plofje microRNA BioinfoCIPF
  • Three-dimensional comparative modeling of RNA.
    Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71.
    by C Zwieb, F Müller
    posted to algorithms bioinformatics comparative_modeling rna by marcius to the group SGU-CIPF on 2006-10-27 21:31:25 as ** along with 1 group BioinfoCIPF
  • RNA structures and folding: from conventional to new issues in structure predictions.
    Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235.
    by P Schuster, PF Stadler, A Renner
    posted to prediction review rna structure by marcius to the group SGU-CIPF on 2006-10-23 17:16:19 as ** along with 1 person and 1 group emidio_capriotti BioinfoCIPF
  • NMR spectroscopy of RNA.
    Chembiochem, Vol. 4, No. 10. (6 October 2003), pp. 936-962.
    by B Fürtig, C Richter, J Wöhnert, H Schwalbe
    posted to nmr review rna by marcius to the group SGU-CIPF on 2006-10-22 12:10:22 as ** along with 1 group BioinfoCIPF
  • A multi-model approach to nucleic acid-based drug development.
    BioDrugs, Vol. 18, No. 1. (2004), pp. 37-50.
    by I Gautherot, R Sodoyer
    posted to discovery drug nmr rna by marcius to the group SGU-CIPF on 2006-10-22 12:09:02 as ** along with 1 group BioinfoCIPF
  • Structural basis for messenger RNA movement on the ribosome
    Nature (18 October 2006)
    by Gulnara Yusupova, Lasse Jenner, Bernard Rees, Dino Moras, Marat Yusupov
    posted to ribosome rna structure by marcius to the group SGU-CIPF on 2006-10-20 14:25:18 as ** along with 1 person and 1 group braingrind BioinfoCIPF
  • The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
    Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119.
    by JS McCaskill
    posted to algorithms biophysics rna secondary_structure by marcius to the group SGU-CIPF on 2006-10-20 14:24:37 as ** along with 5 people and 2 groups evaf arcticrasta condon Hosna Kiarostami beta BioinfoCIPF
  • Mining frequent stem patterns from unaligned RNA sequences
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2480-2487.
    by Hamada, Michiaki, Tsuda, Koji, Kudo, Taku, Kin, Taishin, Asai, Kiyoshi
    posted to algorithms alignment bioinformatics rna by marcius to the group SGU-CIPF on 2006-10-20 13:20:33 as ** along with 1 group BioinfoCIPF
  • RNA world - the dark matter of evolutionary genomics
    Journal of Evolutionary Biology, Vol. 19, No. 6. (2006), pp. 1768-1774.
    by P Michalak
    posted to biology evolution rna views by marcius to the group SGU-CIPF on 2006-10-20 13:19:24 as ** along with 6 people and 4 groups dayjm dchughes cdawson rabu chenlc03 stajich G4ID BioinfoCIPF GIG Genetics-of-Gambling
  • Modulating the outer membrane with small RNAs
    Genes Dev., Vol. 20, No. 17. (1 September 2006), pp. 2338-2348.
    by Maude Guillier, Susan Gottesman, Gisela Storz
    posted to bioengineering membrane rna by marcius to the group SGU-CIPF on 2006-10-20 13:18:20 as ** along with 1 person and 2 groups bala BioinfoCIPF DictyosteliumGroup
  • Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
    Bioinformatics (11 September 2006)
    by N Morozova, J Allers, J Myers, Y Shamoo
    posted to interaction protein rna by marcius to the group SGU-CIPF on 2006-09-15 08:51:28 as ** along with 3 people and 1 group kaarsinogen eckart_bindewald medic0747 BioinfoCIPF
  • Application of the RNA structure classification system, CSNA, to NMR structure determination.
    Nucleic Acids Res Suppl, No. 3. (2003), pp. 127-128.
    by S Baba, A Takasu, K Watanabe, G Kawai
    posted to classification ontology rna structure by marcius to the group SGU-CIPF on 2006-09-13 15:19:00 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • Computational methods for RNA structure determination.
    Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 282-286.
    by F Major, R Griffey
    posted to algorithms bioinformatics review rna structure by marcius to the group SGU-CIPF on 2006-09-13 15:18:38 as ** along with 3 people and 1 group lillekatt P2324548 eckart_bindewald BioinfoCIPF
  • How do RNA folding algorithms work?
    Nature Biotechnology, Vol. 22, No. 11., 1457.
    by Sean R Eddy
    posted to algorithms bioinformatics biophysics folding review rna by marcius to the group SGU-CIPF on 2006-09-08 11:14:16 as ** along with 10 people and 1 group austin cambray evaf tardigrade mtagaya 3times3 cthachuk magnolia maralena guxiyou BioinfoCIPF
  • Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
    BMC Bioinformatics, Vol. 7 (04 September 2006), 400.
    by Robin D Dowell, Sean R Eddy
    posted to algorithms alignment bioinformatics prediction rna structure by marcius to the group SGU-CIPF on 2006-09-07 22:04:11 as ** along with 4 people and 1 group reyez eckart_bindewald dquest ilh BioinfoCIPF
  • SCOR: Structural Classification of RNA, version 2.0.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Tamura, DK Hendrix, PS Klosterman, NR Schimmelman, SE Brenner, SR Holbrook
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:42:13 as ** along with 3 people and 2 groups reyez condon debatebob beta BioinfoCIPF
  • MeRNA: a database of metal ion binding sites in RNA structures.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by LR Stefan, R Zhang, AG Levitan, DK Hendrix, SE Brenner, SR Holbrook
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:41:37 as ** along with 1 group BioinfoCIPF
  • RNA structural motifs: building blocks of a modular biomolecule.
    Q Rev Biophys, Vol. 38, No. 3. (August 2005), pp. 221-243.
    by DK Hendrix, SE Brenner, SR Holbrook
    posted to motif rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:40:41 as ** along with 2 people and 1 group eckart_bindewald debatebob BioinfoCIPF
  • The RNA Ontology Consortium: an open invitation to the RNA community.
    RNA, Vol. 12, No. 4. (April 2006), pp. 533-541.
    by NB Leontis, RB Altman, HM Berman, SE Brenner, JW Brown, DR Engelke, SC Harvey, SR Holbrook, F Jossinet, SE Lewis, F Major, DH Mathews, JS Richardson, JR Williamson, E Westhof
    posted to bioinformatics classification clustering rna sequence structure by marcius to the group SGU-CIPF on 2006-09-07 17:37:08 as ** along with 2 people and 1 group reyez debatebob BioinfoCIPF
  • Computer modeling 16 S ribosomal RNA
    Journal of Molecular Biology, Vol. 221, No. 3. (5 October 1991), pp. 889-907.
    by John M Hubbard, John E Hearst
    posted to algorithms bioinformatics rna structure_prediction by marcius to the group SGU-CIPF on 2006-09-07 13:31:07 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to review rna secondary_structure by marcius to the group SGU-CIPF on 2006-09-06 10:37:25 as ** along with 9 people and 1 group austin winterschlaefer arcticrasta penka Eonwe cthachuk emidio_capriotti physics maralena BioinfoCIPF
  • Secondary Structure Prediction of Interacting RNA Molecules
    Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001.
    by Mirela Andronescu, Zhi C Zhang, Anne Condon
    posted to algorithms bioinformatics rna secondary_structure software by marcius to the group SGU-CIPF on 2006-09-06 10:36:45 as ** along with 4 people and 1 group eckart_bindewald Hosna cthachuk physics BioinfoCIPF
  • A new algorithm for RNA secondary structure design.
    J Mol Biol, Vol. 336, No. 3. (20 February 2004), pp. 607-624.
    by M Andronescu, AP Fejes, F Hutter, HH Hoos, A Condon
    posted to algorithms bioinformatics rna secondary_structure software by marcius to the group SGU-CIPF on 2006-09-06 10:36:07 as ** along with 5 people and 3 groups eckart_bindewald gane5h cthachuk mgaldzic smallbadguy 18th-century_history_culture_and_society BioinfoCIPF CHIP
  • RNAsoft: A suite of RNA secondary structure prediction and design software tools.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3416-3422.
    by M Andronescu, R Aguirre-Hernández, A Condon, HH Hoos
    posted to bioinformatics rna secondary_structure software by marcius to the group SGU-CIPF on 2006-09-06 10:35:54 as ** along with 6 people and 3 groups eckart_bindewald stsaft Hosna cthachuk mgaldzic stajich BioinfoCIPF CHIP Berkeley Mycology
  • Analysis of internal loops within the RNA secondary structure in almost quadratic time
    Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1317-1324.
    by Ogurtsov, Y Aleksey, Shabalina, A Svetlana, Kondrashov, S Alexey, Roytberg, A Mikhail
    posted to algorithms rna secondary_structure by marcius to the group SGU-CIPF on 2006-09-06 10:35:26 as ** along with 1 person and 1 group cthachuk BioinfoCIPF
  • Structure and dynamics of ribosomal RNA.
    Curr Opin Struct Biol, Vol. 8, No. 3. (June 1998), pp. 294-300.
    by SA Woodson, NB Leontis
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-09-06 10:33:29 as ** along with 1 group BioinfoCIPF
  • Conserved geometrical base-pairing patterns in RNA.
    Q Rev Biophys, Vol. 31, No. 4. (November 1998), pp. 399-455.
    by NB Leontis, E Westhof
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-09-06 10:33:20 as ** along with 1 group BioinfoCIPF
  • The building blocks and motifs of RNA architecture.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 279-287.
    by NB Leontis, A Lescoute, E Westhof
    posted to prediction rna motif ribosome by marcius to the group SGU-CIPF on 2006-09-06 10:27:19 as ** along with 2 people and 1 group eckart_bindewald debatebob BioinfoCIPF
  • Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules.
    Biochimie, Vol. 84, No. 9. (September 2002), pp. 961-973.
    by NB Leontis, J Stombaugh, E Westhof
    posted to motif prediction ribosome rna by marcius to the group SGU-CIPF on 2006-09-06 10:25:05 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • The Rna World (Cold Spring Harbor Monograph Series) (Cold Spring Harbor Monograph Series)
    (14 October 2005)
    by Thomas R Cech, John F Atkins
    posted to evolution review rna by marcius to the group SGU-CIPF on 2006-08-24 15:31:06 as ** along with 1 person and 1 group tardigrade BioinfoCIPF
  • Searching RNA motifs and their intermolecular contacts with constraint networks.
    Bioinformatics (4 July 2006)
    by P Thébault, S de Givry, T Schiex, C Gaspin
    posted to algorithms bioinformatics motif rna by marcius to the group SGU-CIPF on 2006-08-23 13:32:31 as ** along with 3 people and 3 groups tardigrade dquest bsmagic Bioinformatics BioinfoCIPF bioinplant
  • CONTRAfold: RNA secondary structure prediction without physics-based models.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by CB Do, DA Woods, S Batzoglou
    posted to algorithms bioinformatics rna secondary_structure statistics by marcius to the group SGU-CIPF on 2006-08-23 13:19:28 as ** along with 6 people and 2 groups austin balajis tardigrade penka condon acarbo beta BioinfoCIPF
  • A bayesian statistical algorithm for RNA secondary structure prediction.
    Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 387-400.
    by Y Ding, CE Lawrence
    posted to bioinformatics rna secondary_structure statistics by marcius to the group SGU-CIPF on 2006-08-23 13:17:05 as ** along with 3 people and 2 groups eckart_bindewald arcticrasta condon beta BioinfoCIPF
  • An RNA gene expressed during cortical development evolved rapidly in humans
    Nature (16 August 2006)
    by Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, David Haussler
    posted to evolution function rna by marcius to the group SGU-CIPF on 2006-08-23 09:49:50 as ** along with 11 people and 2 groups bpcusack brian bpb nickluscombe larios joshuashen ealloza ce2benna lusk nolodie rrhudson EBI-regulation BioinfoCIPF
  • RNA Structure: Reading the Ribosome
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1508-1514.
    by Harry F Noller
    posted to review ribosome rna structure by marcius to the group SGU-CIPF on 2006-08-10 17:13:16 as ** along with 2 people and 1 group dayjm jarasch BioinfoCIPF
  • MOLECULAR BIOLOGY: A New RNA Dimension to Genome Control.
    Science, Vol. 313, No. 5785. (21 July 2006), pp. 305-306.
    by RW Carthew
    posted to review rna by marcius to the group SGU-CIPF on 2006-08-02 17:53:51 as ** along with 7 people and 3 groups dayjm eckart_bindewald tardigrade dchughes mtagaya jackjackjjj nicg G4ID BioinfoCIPF Genetics-of-Gambling
  • RNA as a drug target: chemical, modelling, and evolutionary tools.
    Curr Opin Biotechnol, Vol. 9, No. 1. (February 1998), pp. 66-73.
    by T Hermann, E Westhof
    posted to disease docking drug review rna by marcius to the group SGU-CIPF on 2006-08-01 11:46:07 as ** along with 1 group BioinfoCIPF
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