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Group: SGU-CIPF - with tag protein [43 articles]

グループ SGU-CIPF のメンバーが最近追加した論文の一覧 with tag protein
  • Sequence comparison by sequence harmony identifies subtype-specific functional sites
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6540-6548.
    by W Pirovano, KA Feenstra, J Heringa
    posted to bioinformatics classification function protein sequence_alignment by marcius to the group SGU-CIPF on 2007-01-03 13:02:03 as ** along with 2 people and 1 group sriram_s marti BioinfoCIPF
  • Variability and memory of protein levels in human cells
    Nature (19 November 2006)
    by Alex Sigal, Ron Milo, Ariel Cohen, Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon
    posted to classification protein systems_biology by marcius to the group SGU-CIPF on 2006-11-23 11:02:59 as ** along with 4 people and 2 groups icases jjray margaritis cjeans BioinfoCIPF TNT
  • Evaluation of library ranking efficacy in virtual screening.
    J Comput Chem, Vol. 26, No. 1. (15 January 2005), pp. 11-22.
    by M Kontoyianni, GS Sokol, LM McClellan
    posted to algorithms docking drug ligand protein by marcius to the group SGU-CIPF on 2006-10-21 14:25:23 as ** along with 3 people and 1 group BragilMassoud nachtalp schuwi BioinfoCIPF
  • Protemot: prediction of protein binding sites with automatically extracted geometrical templates.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by DT Chang, YZ Weng, JH Lin, MJ Hwang, YJ Oyang
    posted to bioinformatics drug ligand protein by marcius to the group SGU-CIPF on 2006-10-21 14:24:50 as ** along with 1 group BioinfoCIPF
  • Structural bioinformatic approaches to the discovery of new antimycobacterial drugs.
    Curr Pharm Des, Vol. 10, No. 26. (2004), pp. 3195-3211.
    by K Kantardjieff, B Rupp
    posted to bioinformatics docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:23:24 as ** along with 1 group BioinfoCIPF
  • Virtual screening in structure-based drug discovery.
    Mini Rev Med Chem, Vol. 4, No. 7. (September 2004), pp. 779-791.
    by X Barril, RE Hubbard, SD Morley
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:22:35 as ** along with 1 group BioinfoCIPF
  • Virtual screening in lead discovery and optimization.
    Curr Opin Drug Discov Devel, Vol. 7, No. 4. (July 2004), pp. 396-403.
    by AN Jain
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:21:52 as ** along with 1 group BioinfoCIPF
  • Docking and scoring in virtual screening for drug discovery: methods and applications.
    Nat Rev Drug Discov, Vol. 3, No. 11. (November 2004), pp. 935-949.
    by DB Kitchen, H Decornez, JR Furr, J Bajorath
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:16:46 as ** along with 6 people and 8 groups BragilMassoud dgruiz beapen anita yongzhao sangeetha Bioinformatics structure-bii TSRI_MGL Atopic_and_Seborrhoeic_Dermatitis Skin_Deep insilicodrug Applied_Bimatics BioinfoCIPF
  • A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance.
    Proteins, Vol. 56, No. 2. (1 August 2004), pp. 235-249.
    by E Perola, WP Walters, PS Charifson
    posted to docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:16:10 as ** along with 4 people and 2 groups ramensky BragilMassoud yongzhao schlauchi TSRI_MGL BioinfoCIPF
  • Current status of virtual screening as analysed by target class.
    Med Chem, Vol. 2, No. 1. (January 2006), pp. 89-112.
    by MJ Stoermer
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:14:08 as ** along with 1 person and 2 groups yongzhao TSRI_MGL BioinfoCIPF
  • Recent development and application of virtual screening in drug discovery: an overview.
    Curr Pharm Des, Vol. 10, No. 9. (2004), pp. 1011-1033.
    by T Hou, X Xu
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:12:44 as ** along with 1 group BioinfoCIPF
  • A review of protein-small molecule docking methods.
    J Comput Aided Mol Des, Vol. 16, No. 3. (March 2002), pp. 151-166.
    by RD Taylor, PJ Jewsbury, JW Essex
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:11:15 as ** along with 3 people and 3 groups sangeetha schlauchi massivemayhem Bioinformatics insilicodrug BioinfoCIPF
  • Computational tools for protein modeling.
    Curr Protein Pept Sci, Vol. 1, No. 1. (July 2000), pp. 1-21.
    by D Xu, Y Xu, EC Uberbacher
    posted to algorithms protein review by marcius to the group SGU-CIPF on 2006-10-21 14:10:31 as ** along with 1 person and 1 group granujilla BioinfoCIPF
  • Modelling and simulation: a computational perspective in anticancer drug discovery.
    Curr Med Chem Anticancer Agents, Vol. 4, No. 5. (September 2004), pp. 401-403.
    by F Gago
    posted to algorithms cancer docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:08:41 as ** along with 1 person and 3 groups sangeetha Bioinformatics insilicodrug BioinfoCIPF
  • Docking: successes and challenges.
    Curr Pharm Des, Vol. 11, No. 3. (2005), pp. 323-333.
    by V Mohan, AC Gibbs, MD Cummings, EP Jaeger, RL DesJarlais
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:08:05 as ** along with 1 person and 1 group kazemi BioinfoCIPF
  • New methodologies for ligand-based virtual screening.
    Curr Pharm Des, Vol. 11, No. 9. (2005), pp. 1189-1202.
    by FL Stahura, J Bajorath
    posted to algorithms docking drug ligand protein review by marcius to the group SGU-CIPF on 2006-10-21 14:03:11 as ** along with 1 person and 3 groups sangeetha Bioinformatics insilicodrug BioinfoCIPF
  • A comparative docking study and the design of potentially selective MMP inhibitors.
    J Comput Aided Mol Des, Vol. 15, No. 10. (October 2001), pp. 873-881.
    by S Hanessian, N Moitessier, E Therrien
    posted to algorithms docking ligand protein by marcius to the group SGU-CIPF on 2006-10-21 14:01:55 as ** along with 1 group BioinfoCIPF
  • A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator.
    Proc Natl Acad Sci U S A, Vol. 95, No. 18. (1 September 1998), pp. 10413-10418.
    by S Rhee, RG Martin, JL Rosner, DR Davies
    posted to protein structure by marcius to the group SGU-CIPF on 2006-09-27 15:15:44 as ** along with 1 person and 1 group ezralanglois BioinfoCIPF
  • Natural history as a predictor of protein evolvability
    Protein Engineering, Design and Selection, Vol. 19, No. 10. (2006), pp. 439-442.
    by O'Loughlin, L Taryn, Patrick, M Wayne, Matsumura, Ichiro
    posted to biology evolution protein structure by marcius to the group SGU-CIPF on 2006-09-27 13:52:56 as ** along with 1 group BioinfoCIPF
  • Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
    Bioinformatics (11 September 2006)
    by N Morozova, J Allers, J Myers, Y Shamoo
    posted to interaction protein rna by marcius to the group SGU-CIPF on 2006-09-15 08:51:28 as ** along with 3 people and 1 group kaarsinogen eckart_bindewald medic0747 BioinfoCIPF
  • Sequence and structural differences between enzyme and nonenzyme homologs.
    Structure (Camb), Vol. 10, No. 10. (October 2002), pp. 1435-1451.
    by AE Todd, CA Orengo, JM Thornton
    posted to bioinformatics classification function protein by marcius to the group SGU-CIPF on 2006-09-13 15:36:46 as ** along with 1 person and 1 group matzke BioinfoCIPF
  • Mass spectrometry and the search for moonlighting proteins.
    Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782.
    by CJ Jeffery
    posted to function protein structure by marcius to the group SGU-CIPF on 2006-09-08 16:34:58 as ** along with 1 person and 1 group tny BioinfoCIPF
  • Protein families and their evolution-a structural perspective.
    Annu Rev Biochem, Vol. 74 (2005), pp. 867-900.
    by CA Orengo, JM Thornton
    posted to evolution protein review structure by marcius to the group SGU-CIPF on 2006-09-08 12:28:15 as ** along with 13 people and 5 groups ana barry tjimenez jwm chad_davis Einat Schmidtc sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF
  • Gene3D: modelling protein structure, function and evolution.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Yeats, M Maibaum, R Marsden, M Dibley, D Lee, S Addou, CA Orengo
    posted to function protein server structure by marcius to the group SGU-CIPF on 2006-09-08 12:27:34 as ** along with 1 person and 1 group siebertm BioinfoCIPF
  • Exploiting protein structure data to explore the evolution of protein function and biological complexity.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 425-440.
    by RL Marsden, JA Ranea, A Sillero, O Redfern, C Yeats, M Maibaum, D Lee, S Addou, GA Reeves, TJ Dallman, CA Orengo
    posted to evolution function protein structure by marcius to the group SGU-CIPF on 2006-09-08 12:26:40 as ** along with 1 person and 1 group jsnoddy BioinfoCIPF
  • Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function.
    Protein Sci, Vol. 11, No. 2. (February 2002), pp. 350-360.
    by I Friedberg, H Margalit
    posted to fold function prediction protein by marcius to the group SGU-CIPF on 2006-09-07 17:10:19 as ** along with 1 group BioinfoCIPF
  • New avenues in protein function prediction.
    Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1527-1529.
    by I Friedberg, M Jambon, A Godzik
    posted to function prediction protein views by marcius to the group SGU-CIPF on 2006-09-07 17:09:26 as ** along with 4 people and 3 groups ana aalibes tjimenez topsan structural_bioinformatics Bioinformatics BioinfoCIPF
  • Automated protein function prediction--the genomic challenge.
    Brief Bioinform (23 May 2006)
    by Iddo Friedberg
    posted to function prediction protein views by marcius to the group SGU-CIPF on 2006-09-07 17:06:24 as ** along with 6 people and 2 groups tjimenez yas j3xucite cdallett sgoetz bootsy T_lab BioinfoCIPF
  • JAFA: a protein function annotation meta-server.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by I Friedberg, T Harder, A Godzik
    posted to function protein servers by marcius to the group SGU-CIPF on 2006-09-07 17:05:10 as ** along with 1 person and 1 group sgoetz BioinfoCIPF
  • A top-level ontology of functions and its application in the Open Biomedical Ontologies
    Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e66-e73.
    by P Burek, R Hoehndorf, F Loebe, J Visagie, H Herre, J Kelso
    posted to classification function protein by marcius to the group SGU-CIPF on 2006-08-01 11:49:45 as ** along with 1 person and 1 group ealloza BioinfoCIPF
  • The correlation between protein stability and dipole moment: a critical test
    Protein Engineering, Design and Selection, Vol. 19, No. 8. (August 2006), pp. 355-358.
    by Wunderlich, Michael, Schmid, X Franz
    posted to biophysics experimental protein stability structure by marcius to the group SGU-CIPF on 2006-07-26 14:35:56 as ** along with 1 group BioinfoCIPF
  • Fast protein classification with multiple networks.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by K Tsuda, H Shin, B Schölkopf
    posted to bioinformatics classification protein by marcius to the group SGU-CIPF on 2006-05-15 22:41:32 as ** along with 2 people and 1 group dwf bootsy BioinfoCIPF
  • GlyProt: in silico glycosylation of proteins.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by A Bohne-Lang, CW von der Lieth
    posted to bioinformatics glyco protein by marcius to the group SGU-CIPF on 2006-05-07 20:54:07 as ** along with 2 people and 1 group bpb csardas BioinfoCIPF
  • Physical Origins of Protein Superfamilies.
    J Mol Biol (6 February 2006)
    by Konstantin B B Zeldovich, Igor N N Berezovsky, Eugene I I Shakhnovich
    posted to biophysics computational_biology evolution protein structure by marcius to the group SGU-CIPF on 2006-04-27 20:29:04 as ** along with 3 people and 2 groups Einat laurabailey happy_manatee structural_bioinformatics BioinfoCIPF
  • Development and validation of a consistency based multiple structure alignment algorithm
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1080-1087.
    by Jessica Ebert, Douglas Brutlag
    posted to bioinformatics protein structure_alignment by marcius to the group SGU-CIPF on 2006-04-24 19:49:13 as ** along with 1 person and 1 group radek BioinfoCIPF
  • Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins
    Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114.
    by Daniel M Weinreich, Nigel F Delaney, Mark A Depristo, Daniel L Hartl
    posted to evolution protein by marcius to the group SGU-CIPF on 2006-04-21 17:29:24 as ** along with 14 people and 4 groups stevanspringer barry pansapiens imouthesmp dayjm Einat i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema bpcusack structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF
  • The DIMA web resourceexploring the protein domain network
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 997-998.
    by Philipp Pagel, Matthias Oesterheld, Dmitrij Frishman
    posted to bioinformatics protein protein_interactions servers software by marcius to the group SGU-CIPF on 2006-04-08 00:11:05 as ** along with 3 people and 1 group chad_davis bootsy kintoki BioinfoCIPF
  • RNA molecules stimulate prion protein conversion.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 717-720.
    by NR Deleault, RW Lucassen, S Supattapone
    posted to disease docking protein rna by marcius to the group SGU-CIPF on 2006-03-14 03:01:13 as ** along with 1 person and 1 group mtagaya BioinfoCIPF
  • PMUT: a web-based tool for the annotation of pathological mutations on proteins.
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3176-3178.
    by C Ferrer-Costa, JL Gelpí, L Zamakola, I Parraga, X de la Cruz, M Orozco
    posted to protein protein_structure servers snp by marcius to the group SGU-CIPF on 2006-01-17 19:14:25 as ** along with 1 group BioinfoCIPF
  • Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties.
    J Mol Biol, Vol. 315, No. 4. (25 January 2002), pp. 771-786.
    by C Ferrer-Costa, M Orozco, X de la Cruz
    posted to bioinformatics classification protein protein_structure snp by marcius to the group SGU-CIPF on 2006-01-17 19:13:45 as ** along with 1 person and 2 groups caporaso biomedical-nlp BioinfoCIPF
  • Sequence-based prediction of pathological mutations.
    Proteins, Vol. 57, No. 4. (1 December 2004), pp. 811-819.
    by C Ferrer-Costa, M Orozco, X de la Cruz
    posted to bioinformatics classification protein snp by marcius to the group SGU-CIPF on 2006-01-17 19:13:07 as ** along with 1 person and 1 group chrn BioinfoCIPF
  • Simulation of non-specific proteinmRNA interactions
    Nucleic Acids Research, Vol. 33, No. 21. (2005), pp. 6694-6699.
    by James Magee, Jim Warwicker
    posted to biophysics computational_biology molecular_dynamics protein rna by marcius to the group SGU-CIPF on 2006-01-12 19:13:27 as ** along with 1 group BioinfoCIPF
  • BioThesaurus: a web-based thesaurus of protein and gene names
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 103-105.
    by Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy Wu
    posted to bioinformatics protein servers text_mining by marcius to the group SGU-CIPF on 2006-01-12 19:09:28 as ** along with 4 people and 1 group eweaver t11 moonbasilisk mircea BioinfoCIPF
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