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Group: BUiGEM - library [153 articles]

グループ BUiGEM のメンバーが最近追加した論文の一覧
  • Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices
    Meth Enzymol, Vol. 422 (Jan 2007), pp. 488-512.
    by Alexander J Ninfa, Stephen Selinsky, Nicolas Perry, Stephen Atkins, Qi X Song, Avi Mayo, David Arps, Peter Woolf, Mariette R Atkinson
    posted to syntheticbiology foundationalsb by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones
    Mol Microbiol, Vol. 55, No. 3. (Feb 2005), pp. 712-23.
    by Cynthia H Collins, Frances H Arnold, Jared R Leadbetter
    posted to syntheticbiology foundationalsb vibrio transduction transcription trans-activators site-directed signal repressor regulation proteins mutation mutagenesis molecular models green genetic gene fluorescent fischeri expression evolution directed bacterial 4-butyrolactone by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • From systems biology to synthetic biology
    Mol Syst Biol, Vol. 1 (Jan 2005)
    by George M Church
    posted to syntheticbiology foundationalsb systems online models genetic enhancement biology biological by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • Tuning genetic control through promoter engineering
    Proc Natl Acad Sci USA, Vol. 102, No. 36. (Sep 2005), pp. 12678-83.
    by Hal Alper, Curt Fischer, Elke Nevoigt, Gregory Stephanopoulos
    posted to syntheticbiology foundationalsb transcription saccharomyces regulation regions promoter library genetics genetic gene fungal expression escherichia engineering coli cerevisiae bacterial by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • Gene regulation at the single-cell level
    Science, Vol. 307, No. 5717. (Mar 2005), pp. 1962-5.
    by Nitzan Rosenfeld, Jonathan W Young, Uri Alon, Peter S Swain, Michael B Elowitz
    posted to syntheticbiology foundationalsb viral transduction transcription signal repressor regulation regions recombinant proteins promoter processing models microscopy mathematics luminescent lambda image green genetics genetic gene fusion fluorescent fluorescence factors expression escherichia dna-binding cycle computer-assisted coli cell bacteriophage bacterial by macowell to the group BUiGEM on 2007-08-16 21:20:59 as ** along with 1 person jjray
  • Synthetic promoter libraries--tuning of gene expression
    Trends Biotechnol, Vol. 24, No. 2. (Feb 2006), pp. 53-5.
    by Karin Hammer, Ivan Mijakovic, Peter R Jensen
    posted to syntheticbiology foundationalsb regions promoter library genetics genetic gene expression engineering by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • The economics of synthetic biology
    Mol Syst Biol, Vol. 3 (Jan 2007)
    by Joachim Henkel, Stephen M Maurer
    posted to syntheticbiology foundationalsb synthetic registry policy genetic engineering biotechnology biology by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • Biology by design: reduction and synthesis of cellular components and behaviour
    Journal of the Royal Society, Interface / the Royal Society, Vol. 4, No. 15. (Aug 2007), pp. 607-23.
    by Philippe Marguet, Frederick Balagadde, Cheemeng Tan, Lingchong You
    posted to syntheticbiology foundationalsb by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • Mammalian synthetic biology: Engineering of sophisticated gene networks
    J Biotechnol, Vol. 130, No. 4. (Jul 2007), pp. 329-45.
    by David Greber, Martin Fussenegger
    posted to syntheticbiology foundationalsb by macowell to the group BUiGEM on 2007-08-16 21:20:59 as **
  • Production of isoprenoid pharmaceuticals by engineered microbes
    Nat Chem Biol, Vol. 2, No. 12. (Dec 2006), pp. 674-81.
    by Michelle CY Chang, Jay D Keasling
    posted to syntheticbiology foundationalsb terpenes saccharomyces genetic escherichia engineering drug design coli cerevisiae by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Environmentally controlled invasion of cancer cells by engineered bacteria
    J Mol Biol, Vol. 355, No. 4. (Jan 2006), pp. 619-27.
    by Christopher J Anderson, Elizabeth J Clarke, Adam P Arkin, Christopher A Voigt
    posted to syntheticbiology foundationalsb yersinia vibrio vectors tumor sequence regulation regions pseudotuberculosis proteins promoter neoplasms line hypoxia humans genetics genetic gene fischeri expression escherichia engineering count coli cell base bacterial adhesins by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Engineering life: building a fab for biology
    Sci Am, Vol. 294, No. 6. (Jun 2006), pp. 44-51.
    by Bio FAB Group, David Baker, George Church, Jim Collins, Drew Endy, Joseph Jacobson, Jay Keasling, Paul Modrich, Christina Smolke, Ron Weiss
    posted to syntheticbiology foundationalsb therapeutics technology sequence pharmaceutical oligonucleotide genetic escherichia engineering electronics dna coli biotechnology bacteria array analysis by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • The engineering of gene regulatory networks
    Annual review of biomedical engineering, Vol. 5 (Jan 2003), pp. 179-206.
    by Mads Kaern, William J Blake, JJ Collins
    posted to syntheticbiology foundationalsb transcription stochastic regulation protein processes models humans genetic gene expression engineering animals by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Combinatorial promoter design for engineering noisy gene expression
    Proc Natl Acad Sci USA, Vol. 104, No. 31. (Jul 2007), pp. 12726-31.
    by Kevin F Murphy, Gábor Balázsi, James J Collins
    posted to syntheticbiology foundationalsb transcription synthetic logic iettv biology by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Idempotent Vector Design for Standard Assembly of Biobricks
    MIT Synthetic Biology Working Group (Mar 2006)
    by Tom Knight
    posted to syntheticbiology foundationalsb by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Deoxyribozymes that recode sequence information
    Nucleic Acids Res, Vol. 34, No. 8. (Jan 2006), pp. 2166-72.
    by Jeffrey J Tabor, Matthew Levy, Andrew D Ellington
    posted to syntheticbiology foundationalsb substrate specificity sequence regulation reaction protein polymerase pairing oligonucleotides nucleic ligases enzyme engineering domain dna conformation chain catalytic catalysis base allosteric activation acid by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Noise propagation in gene networks
    Science, Vol. 307, No. 5717. (Mar 2005), pp. 1965-9.
    by Juan M Pedraza, Alexander van Oudenaarden
    posted to syntheticbiology foundationalsb viral transduction transcription thiogalactoside tetracyclines stochastic signal repressor reporter regulation regions proteins promoter processes models microscopy mathematics luminescent isopropyl green genetics genetic genes gene fluorescent fluorescence expression escherichia dna-binding coli bacterial by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Construction of a genetic toggle switch in Escherichia coli
    Nature, Vol. 403, No. 6767. (Jan 2000), pp. 339-42.
    by TS Gardner, CR Cantor, JJ Collins
    posted to syntheticbiology foundationalsb viral transcription stochastic repressor regulation regions proteins promoter processes plasmids models genetics genetic genes gene expression escherichia dna-binding coli bacterial by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Simulation of prokaryotic genetic circuits
    Annual review of biophysics and biomolecular structure, Vol. 27 (Jan 1998), pp. 199-224.
    by HH Mcadams, A Arkin
    posted to syntheticbiology foundationalsb stochastic processes physiology models homeostasis genetic genes cycle cell bacterial bacteria by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Genetic parts to program bacteria
    Curr Opin Biotechnol, Vol. 17, No. 5. (Oct 2006), pp. 548-57.
    by Christopher A Voigt
    posted to syntheticbiology foundationalsb regulation proteins models genome genetic gene expression engineering bacterial bacteria by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • The engineer's approach to biology
    EMBO Rep, Vol. 7, No. 1. (Jan 2006), pp. 21-3.
    by Holger Breithaupt
    posted to syntheticbiology foundationalsb molecular humans engineering biotechnology biology by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Synthetic biology: engineering Escherichia coli to see light
    Nature, Vol. 438, No. 7067. (Nov 2005), pp. 441-2.
    by Anselm Levskaya, Aaron A Chevalier, Jeffrey J Tabor, Zachary B Simpson, Laura A Lavery, Matthew Levy, Eric A Davidson, Alexander Scouras, Andrew D Ellington, Edward M Marcotte, Christopher A Voigt
    posted to syntheticbiology foundationalsb tetrapyrroles reporter regulation recombinant proteins protein phytochrome phycocyanin phycobilins photoreceptors photography operon microbial light lac kinases genetic genes gene fusion expression escherichia engineering color coli biology bacterial agar by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Essential genes of a minimal bacterium
    Proc Natl Acad Sci USA, Vol. 103, No. 2. (Jan 2006), pp. 425-30.
    by John I Glass, Nacyra A Garcia, Nina Alperovich, Shibu Yooseph, Matthew R Lewis, Mahir Maruf, Clyde A Hutchison, Hamilton O Smith, Craig J Venter
    posted to syntheticbiology foundationalsb sequence mycoplasma mutation molecular genome genitalium genes essential data bacterial by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • A perspective of synthetic biology: assembling building blocks for novel functions
    Biotechnol J, Vol. 1, No. 6. (Jun 2006), pp. 690-9.
    by Pengcheng Fu
    posted to syntheticbiology foundationalsb systems simulation models integration genetic engineering computer biotechnology biomimetics biology biological by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
    Nat Biotechnol, Vol. 22, No. 12. (Dec 2004), pp. 1567-72.
    by Nathan C Shaner, Robert E Campbell, Paul A Steinbach, Ben NG Giepmans, Amy E Palmer, Roger Y Tsien
    posted to syntheticbiology foundationalsb substitution spectrometry site-directed sequence recombinant proteins protein mutagenesis molecular luminescent genetic fluorescence enhancement engineering data anthozoa animals amino acid by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • A synthetic oscillatory network of transcriptional regulators
    Nature, Vol. 403, No. 6767. (Jan 2000), pp. 335-8.
    by MB Elowitz, S Leibler
    posted to syntheticbiology foundationalsb viral transcription stochastic rna repressor regions proteins promoter processes plasmids models messenger luminescent green genetics genetic genes fourier fluorescent escherichia dna-binding coli clocks biological bacterial analysis by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Foundations for engineering biology
    Nature, Vol. 438, No. 7067. (Nov 2005), pp. 449-53.
    by Drew Endy
    posted to syntheticbiology foundationalsb risk humans evolution engineering biotechnology biology by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Systems biology as a foundation for genome-scale synthetic biology
    Curr Opin Biotechnol, Vol. 17, No. 5. (Oct 2006), pp. 488-92.
    by Christian L Barrett, Tae Y Kim, Hyun U Kim, Bernhard Palsson, Sang Y Lee
    posted to syntheticbiology foundationalsb systems software molecular models genome evolution computational biology biological by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR
    Nat Biotechnol, Vol. 24, No. 6. (Jun 2006), pp. 708-12.
    by Cynthia H Collins, Jared R Leadbetter, Frances H Arnold
    posted to syntheticbiology foundationalsb trans-activators repressor recombinant proteins protein genetic escherichia enhancement engineering communication coli cell by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Genome transplantation in bacteria: changing one species to another
    Science, Vol. 317, No. 5838. (Aug 2007), pp. 632-8.
    by Carole Lartigue, John I Glass, Nina Alperovich, Rembert Pieper, Prashanth P Parmar, Clyde A Hutchison, Hamilton O Smith, Craig J Venter
    posted to syntheticbiology foundationalsb by macowell to the group BUiGEM on 2007-08-16 21:20:58 as **
  • Cloning and characterization of glycine-rich RNA-binding protein cDNAs in the moss Physcomitrella patens.
    Plant Cell Physiol, Vol. 45, No. 1. (January 2004), pp. 48-56.
    by T Nomata, Y Kabeya, N Sato
    posted to teamexample physcomitrella genetics by macowell to the group BUiGEM on 2007-07-03 02:07:46 as **
  • Quantitative promoter analysis in Physcomitrella patens: a set of plant vectors activating gene expression within three orders of magnitude.
    BMC Biotechnol, Vol. 4 (7 July 2004)
    by V Horstmann, CM Huether, W Jost, R Reski, EL Decker
    posted to teamexample physcomitrella by macowell to the group BUiGEM on 2007-07-03 02:04:58 as **
  • The moss Physcomitrella patens.
    Annu Rev Genet, Vol. 39 (2005), pp. 339-358.
    by D Cove
    posted to teamexample physcomitrella by macowell to the group BUiGEM on 2007-07-03 02:00:40 as ***
  • DEVELOPMENT, GENETICS AND MOLECULAR BIOLOGY OF MOSSES
    Botanica acta, Vol. 111, No. 11. (1998), pp. 1-15.
    by R Reski
    posted to teamexample physcomitrella by macowell to the group BUiGEM on 2007-07-03 01:52:38 as **
  • Efficient gene targeting in the moss Physcomitrella patens
    The Plant Journal, Vol. 11, No. 6. (1997), pp. 1195-1206.
    by Didier G Schaefer, Jean-Pierre Zryd
    posted to teamexample physcomitrella by macowell to the group BUiGEM on 2007-07-03 01:52:00 as ***
  • Mosses as model systems
    Trends in Plant Science, Vol. 2, No. 3. (March 1997), pp. 99-105.
    by David J Cove, Celia D Knight, Tilman Lamparter
    posted to teamexample physcomitrella by macowell to the group BUiGEM on 2007-07-03 01:44:12 as ****
  • Visual Methods from Atoms to Cells
    Structure, Vol. 13, No. 3. (March 2005), pp. 347-354.
    by David S Goodsell
    posted to modeling molecular review visualization by macowell to the group BUiGEM on 2006-12-19 19:09:17 as ****
  • In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.
    Methods, Vol. 19, No. 3. (November 1999), pp. 425-433.
    by MH Kuo, CD Allis
    posted to chip genomics systems_biology by macowell to the group BUiGEM on 2006-07-24 23:31:46 as *** along with 3 people and 1 group royalzhang jtomasch Jporci Computational-Genomics
  • Genetic engineering of phytochrome biosynthesis in bacteria.
    Proc Natl Acad Sci U S A, Vol. 98, No. 19. (11 September 2001), pp. 10566-10571.
    by GA Gambetta, JC Lagarias
    posted to photosensor by BUiGEM to the group BUiGEM on 2006-07-14 17:17:33 as *****
  • Network dynamics and cell physiology.
    Nat Rev Mol Cell Biol, Vol. 2, No. 12. (December 2001), pp. 908-916.
    by JJ Tyson, K Chen, B Novak
    posted to luxcdabe modeling review by macowell to the group BUiGEM on 2006-07-03 08:39:41 as *** along with 6 people and 2 groups rklancer dbk bayesian sinister jbchang Evangelia streptomyces dbk-lab
  • Investigating autocatalytic gene expression systems through mechanistic modeling.
    J Theor Biol, Vol. 201, No. 1. (7 November 1999), pp. 25-36.
    by TA Carrier, JD Keasling
    posted to modeling by macowell to the group BUiGEM on 2006-07-03 08:35:20 as **
  • Stability and reachability analysis of a hybrid model of luminescence in the marine bacterium Vibrio Fisheri
    (2001)
    by C Belta, J Schug, T Dang, V Kumar, G Pappas, H Rubin, P Dunlap
    posted to fulltext luxcdabe modeling by macowell to the group BUiGEM on 2006-07-03 08:24:19 as *****
  • Taming the Complexity of Biochemical Models through Bisimulation and Collapsing: Theory and Practice
    by M Antoniotti, B Mishra, C Piazza, A Policriti, M Simeoni
    posted to fulltext luxcdabe by macowell to the group BUiGEM on 2006-07-03 08:23:13 as ***
  • Simulation of prokaryotic genetic circuits.
    Annu Rev Biophys Biomol Struct, Vol. 27 (1998), pp. 199-224.
    by HH McAdams, A Arkin
    posted to fulltext luxcdabe modeling review by macowell to the group BUiGEM on 2006-07-03 08:22:29 as read
  • Luminescence control in the marine bacterium Vibrio fischeri: an analysis of the dynamics of lux regulation
    Journal of Molecular Biology, Vol. 296, No. 4. (3 March 2000), pp. 1127-1137.
    by Sally James, Patric Nilsson, Geoffrey James, Staffan Kjelleberg, Torbjorn Fagerstrom
    posted to luxcdabe modeling by macowell to the group BUiGEM on 2006-07-03 08:14:21 as *****
  • Transcriptional regulation of bioluminesence genes from Vibrio fischeri.
    Mol Microbiol, Vol. 17, No. 5. (September 1995), pp. 801-812.
    by DM Sitnikov, JB Schineller, TO Baldwin
    posted to luxcdabe modeling by macowell to the group BUiGEM on 2006-07-03 08:11:40 as ****
  • Multiple repetitive elements and organization of the lux operons of luminescent terrestrial bacteria.
    J Bacteriol, Vol. 174, No. 16. (August 1992), pp. 5371-5381.
    by EA Meighen, RB Szittner
    posted to free gene_luxcdabe by BUiGEM to the group BUiGEM on 2006-06-20 17:25:41 as *****
  • Quorum sensing: cell-to-cell communication in bacteria.
    Annu Rev Cell Dev Biol, Vol. 21 (2005), pp. 319-346.
    by CM Waters, BL Bassler
    posted to gene_luxcdabe review by BUiGEM to the group BUiGEM on 2006-06-12 17:15:35 as ***** along with 3 people dbikard superpyrin CareyNadell
  • Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.
    Proc Natl Acad Sci U S A, Vol. 101, No. 30. (27 July 2004), pp. 10955-10960.
    by J Garcia-Ojalvo, MB Elowitz, SH Strogatz
    posted to model quorum_sensing by BUiGEM to the group BUiGEM on 2006-06-07 22:24:08 as ** along with 3 people rklancer johncumbers mesominimax
  • lux genes and the applications of bacterial bioluminescence.
    J Gen Microbiol, Vol. 138, No. 7. (July 1992), pp. 1289-1300.
    by GS Stewart, P Williams
    posted to gene_luxcdabe review by BUiGEM to the group BUiGEM on 2006-06-04 12:06:36 as ***
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