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Group: EBI-regulation - with tag expression [30 articles]

グループ EBI-regulation のメンバーが最近追加した論文の一覧 with tag expression
  • A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1051-1060.
    by Guglielmo Roma, Gilda Cobellis, Pamela Claudiani, Francesco Maione, Pedro Cruz, Gaetano Tripoli, Marco Sardiello, Ivana Peluso, Elia Stupka
    posted to stem expression by nickluscombe to the group EBI-regulation on 2007-07-03 12:46:13 as ** along with 1 person hplatero
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to yeast tf expression by nickluscombe to the group EBI-regulation on 2007-06-13 09:45:15 as ** along with 10 people and 5 groups dpollard xico zwang lizabeth dejori xingxu naegele czeller mapplab siebert Bioinformatics EisenLab WetBiology ic4 generif_paper
  • Network activity-independent coordinated gene expression program for synapse assembly.
    Proc Natl Acad Sci U S A, Vol. 104, No. 11. (13 March 2007), pp. 4658-4663.
    by LM Valor, P Charlesworth, L Humphreys, CN Anderson, SG Grant
    posted to expression brain by nickluscombe to the group EBI-regulation on 2007-06-11 09:08:34 as **
  • Conservation of Regional Gene Expression in Mouse and Human Brain
    PLoS Genetics, Vol. 3, No. 4. (1 April 2007), e59.
    by Andrew D Strand, Aaron K Aragaki, Zachary C Baquet, Angela Hodges, Philip Cunningham, Peter Holmans, Kevin R Jones, Lesley Jones, Charles Kooperberg, James M Olson
    posted to expression conservation brain by nickluscombe to the group EBI-regulation on 2007-04-23 19:22:36 as ** along with 7 people jeremymiller Iden-J_GluR cjeans ghattem suizan ppark klo
  • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    Nat Biotech, Vol. 25, No. 1. (February 2007), pp. 117-124.
    by Peng Lu, Christine Vogel, Rong Wang, Xin Yao, Edward M Marcotte
    posted to regulation expression by nickluscombe to the group EBI-regulation on 2007-01-22 12:56:01 as ** along with 8 people jyuh balabu aswin nicoleq dylan77 nedwards caseybrown ptrobajo
  • Clustering by Passing Messages Between Data Points.
    Science (11 January 2007)
    by Brendan J J Frey, Delbert Dueck
    posted to expression by nickluscombe to the group EBI-regulation on 2007-01-19 13:03:14 as ** along with 26 people and 1 group doitian kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal rdiaz ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 matjes johnkork XIANG iris_2001 soundray ParkinsonLab_at_MaRS
  • A gene atlas of the mouse and human protein-encoding transcriptomes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067.
    by AI Su, T Wiltshire, S Batalov, H Lapp, KA Ching, D Block, J Zhang, R Soden, M Hayakawa, G Kreiman, MP Cooke, JR Walker, JB Hogenesch
    posted to mammals expression by nickluscombe to the group EBI-regulation on 2007-01-19 11:20:09 as ** along with 11 people and 1 group dragonrez jeremymiller eukfn usagi-kirin cjeans asu shikin jdiezperezj caseybrown maralena gjuggler GeschwindLab
  • Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e8.
    by Jeremiah J Faith, Boris Hayete, Joshua T Thaden, Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J Collins, Timothy S Gardner
    posted to regulation expression ecoli by nickluscombe to the group EBI-regulation on 2007-01-11 05:22:29 as ** along with 7 people and 1 group icases jfr teuder aswin heliopais austin roys TNT
  • A hitchhiker's guide to expressed sequence tag (EST) analysis.
    Brief Bioinform (23 May 2006)
    by Shivashankar H H Nagaraj, Robin B B Gasser, Shoba Ranganathan
    posted to expression est by nickluscombe to the group EBI-regulation on 2007-01-11 05:20:28 as ** along with 2 people and 1 group Sharpshoot sgoetz Bioinformatics
  • Human Protein Atlas charts a diverse terrain.
    Trends Biotechnol, Vol. 24, No. 5. (May 2006), pp. 195-197.
    by P Saviranta, O Kallioniemi
    posted to expression mammals protein by nickluscombe to the group EBI-regulation on 2006-07-03 12:37:26 as **
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to chip-chip expression regulation by nickluscombe to the group EBI-regulation on 2006-06-30 13:03:05 as ** along with 12 people ggrot dragonrez bayesian wnpx koller frohike karfunkel roys dquest balicea carlk tvdbulck
  • Predicting gene expression from sequence.
    Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198.
    by MA Beer, S Tavazoie
    posted to bayesian expression predictions regulation tfbs by nickluscombe to the group EBI-regulation on 2006-06-30 12:16:01 as ** along with 9 people and 4 groups tharris ana xwbcn adepace noano koller jrest phoenixzxl klo C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab
  • Regulatory element detection using correlation with expression.
    Nat Genet, Vol. 27, No. 2. (February 2001), pp. 167-171.
    by HJ Bussemaker, H Li, ED Siggia
    posted to expression tfbs by nickluscombe to the group EBI-regulation on 2006-06-29 14:55:38 as ** along with 4 people and 1 group dpollard heliopais tvdbulck isimpson EisenLab
  • REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3487-3490.
    by C Roven, HJ Bussemaker
    posted to expression transcription by nickluscombe to the group EBI-regulation on 2006-06-29 14:53:54 as ** along with 3 people dquest heliopais mariakmejia
  • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
    BMC Bioinformatics, Vol. 5 (18 March 2004)
    by F Gao, BC Foat, HJ Bussemaker
    posted to chip-chip expression transcription by nickluscombe to the group EBI-regulation on 2006-06-29 14:50:29 as ** along with 7 people tmmurali tuck gpalidwor koller Ao_Li2007 mariakmejia tvdbulck
  • A genetic signature of interspecies variations in gene expression
    Nature Genetics, Vol. 38, No. 7. (18 June 2006), pp. 830-834.
    by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai
    posted to expression yeast by nickluscombe to the group EBI-regulation on 2006-06-28 11:52:21 as ** along with 4 people and 1 group adepace aswin cjeans caseybrown EisenLab
  • Revealing modular organization in the yeast transcriptional network.
    Nat Genet, Vol. 31, No. 4. (August 2002), pp. 370-377.
    by J Ihmels, G Friedlander, S Bergmann, O Sarig, Y Ziv, N Barkai
    posted to expression yeast by nickluscombe to the group EBI-regulation on 2006-05-22 15:35:43 as ** along with 5 people and 1 group adepace natstreet karfunkel ellakat siebert EisenLab
  • Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program.
    PLoS Genet, Vol. 1, No. 3. (September 2005)
    by J Ihmels, S Bergmann, J Berman, N Barkai
    posted to evolution expression yeast by nickluscombe to the group EBI-regulation on 2006-05-09 15:52:51 as ** along with 1 person and 1 group adepace EisenLab
  • The expanding transcriptome: the genome as the 'Book of Sand'
    The EMBO Journal, Vol. aop, No. current. (02 March 2006)
    by Luis, Juan Valcarcel
    posted to eukaryotes expression regulation transcription by nickluscombe to the group EBI-regulation on 2006-05-03 12:03:12 as ** along with 4 people balajis JeffR100 farhat heliopais
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
    posted to evolution expression primates by nickluscombe to the group EBI-regulation on 2006-04-28 16:09:09 as ** along with 15 people and 3 groups stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman ranb johncumbers djkt nicg mikaelhuss JeffR100 candypmcg emarker emptyhb FAB-lab G4ID Genetics-of-Gambling
  • CTCF Mediates Interchromosomal Colocalization Between Igf2/H19 and Wsb1/Nf1
    Science, Vol. 312, No. 5771. (14 April 2006), pp. 269-272.
    by Jian Q Ling, Tao Li, Ji F Hu, Thanh H Vu, Hui L Chen, Xin W Qiu, Athena M Cherry, Andrew R Hoffman
    posted to expression regulation by nickluscombe to the group EBI-regulation on 2006-04-13 23:51:19 as ** along with 1 person JeffR100
  • MOLECULAR BIOLOGY: Managing Associations Between Different Chromosomes
    Science, Vol. 312, No. 5771. (14 April 2006), pp. 207-208.
    by Charalampos G Spilianakis, Richard A Flavell
    posted to expression regulation by nickluscombe to the group EBI-regulation on 2006-04-13 23:49:32 as ****
  • Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.
    Mol Cell, Vol. 18, No. 2. (15 April 2005), pp. 171-183.
    by M Radonjic, JC Andrau, P Lijnzaad, P Kemmeren, TT Kockelkorn, D van Leenen, NL van Berkum, FC Holstege
    posted to expression yeast by nickluscombe to the group EBI-regulation on 2006-04-13 18:18:44 as **
  • Comparison of computational methods for the identification of cell cycle-regulated genes.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1164-1171.
    by U de Lichtenberg, LJ Jensen, A Fausbøll, TS Jensen, P Bork, S Brunak
    posted to cell-cycle expression yeast by nickluscombe to the group EBI-regulation on 2006-04-13 17:43:02 as ** along with 2 people phoenixzxl larsjuhljensen
  • Mapping pathways and phenotypes by systematic gene overexpression.
    Mol Cell, Vol. 21, No. 3. (3 February 2006), pp. 319-330.
    by R Sopko, D Huang, N Preston, G Chua, B Papp, K Kafadar, M Snyder, SG Oliver, M Cyert, TR Hughes, C Boone, B Andrews
    posted to expression phenotype yeast by nickluscombe to the group EBI-regulation on 2006-04-12 09:20:51 as ** along with 2 people nirfriedman koller
  • BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System.
    PLoS Biol, Vol. 4, No. 4. (April 2006)
    by S Magdaleno, P Jensen, CL Brumwell, A Seal, K Lehman, A Asbury, T Cheung, T Cornelius, DM Batten, C Eden, SM Norland, DS Rice, N Dosooye, S Shakya, P Mehta, T Curran
    posted to development expression mammals by nickluscombe to the group EBI-regulation on 2006-04-11 20:41:27 as ****
  • The cell cycle-regulated genes of Schizosaccharomyces pombe.
    PLoS Biol, Vol. 3, No. 7. (July 2005)
    by A Oliva, A Rosebrock, F Ferrezuelo, S Pyne, H Chen, S Skiena, B Futcher, J Leatherwood
    posted to expression regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-06 12:52:27 as **
  • Neutral and adaptive variation in gene expression
    PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5425-5430.
    by Andrew Whitehead, Douglas L Crawford
    posted to evolution expression by nickluscombe to the group EBI-regulation on 2006-04-05 21:48:50 as ** along with 6 people and 2 groups cmm RowanBarrett knightjar natstreet cisevol klo FAB-lab cis-regulatory-evolution
  • Similar gene expression profiles do not imply similar tissue functions.
    Trends Genet, Vol. 22, No. 3. (March 2006), pp. 132-138.
    by I Yanai, JO Korbel, S Boue, SK McWeeney, P Bork, MJ Lercher
    posted to expression mammals by nickluscombe to the group EBI-regulation on 2006-04-04 20:07:51 as *** along with 1 person cjeans
  • Gene expression patterns in human placenta.
    Proc Natl Acad Sci U S A (27 March 2006)
    by Ruchira Sood, James L L Zehnder, Maurice L L Druzin, Patrick O O Brown
    posted to expression human by nickluscombe to the group EBI-regulation on 2006-04-04 19:58:09 as ***
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