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著者: Wodak [43 articles]

Recent papers posted to CiteULike by the author Wodak.
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to yeast protein-protein mediator by mapplab on 2008-07-21 21:05:15 as ** along with 20 people and 4 groups chasmand hplatero frohike carlk Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to capri by timg on 2008-07-17 10:27:44 as read along with 7 people bicko chad_davis ruvido cjeans carlescorbi yalexeev middledomain
  • Automatic protein design with all atom force-fields by exact and heuristic optimization.
    Journal of molecular biology, Vol. 301, No. 3. (18 August 2000), pp. 713-736.
    by L Wernisch, S Hery, SJ Wodak
    posted to structure scp design by carlk on 2008-06-26 16:36:59 as **
  • Mechanism and Energy Landscape of Domain Swapping in the B1 Domain of Protein G
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Anatoly Malevanets, Fernanda Sirota-Leite, Shoshana J Wodak
    posted to swapping protein landscape g energy domain by paulschlesinger on 2008-06-21 00:08:54 as **
  • The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation.
    J Biol Chem, Vol. 276, No. 16. (20 April 2001), pp. 13217-13225.
    by C Govaerts, C Blanpain, X Deupi, S Ballet, JA Ballesteros, SJ Wodak, G Vassart, L Pardo, M Parmentier
    posted to intro ccr5 by tkershaw on 2008-06-07 12:19:42 as ** along with 1 person and 1 group xdeupi LabCompMed
  • Automatic sequence design of MHC Class-I binding peptides impairing CD8+ T cell recognition
    J. Biol. Chem. (30 October 2002), M206853200.
    by Koji Ogata, Alfonso Jaramillo, William Cohen, Jean-Paul Briand, Francine Connan, Jeannine Choppin, Sylviane Muller, Shoshana J Wodak
    posted to computational_protein_design enzyme_design by msuarezdiez on 2008-04-22 11:51:18 as read
  • CYGD: the Comprehensive Yeast Genome Database.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by U Güldener, M Münsterkötter, G Kastenmüller, N Strack, J van Helden, C Lemer, J Richelles, SJ Wodak, J García-Martínez, JE Pérez-Ortín, H Michael, A Kaps, E Talla, B Dujon, B André, JL Souciet, J De Montigny, E Bon, C Gaillardin, HW Mewes
    posted to db new by irenas on 2008-04-14 14:20:38 as ** along with 2 people chad_davis iris_2001
  • The Third CAPRI Assessment Meeting Toronto, Canada, April 20-21, 2007.
    Structure, Vol. 15, No. 7. (July 2007), pp. 755-759.
    by J Janin, S Wodak
    posted to interfaces prediction by marti on 2008-04-11 16:13:39 as *** along with 2 people bicko chad_davis
  • Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 242-249.
    by SJ Wodak, R Méndez
    posted to capri chapter ppi by ruvido on 2008-04-07 09:56:44 as ** along with 3 people nachtalp chad_davis ffranca
  • Combining pattern discovery and discriminant analysis to predict gene co-regulation.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2370-2379.
    by N Simonis, SJ Wodak, GN Cohen, J van Helden
    posted to enhancerprediction by maximilianh on 2008-02-07 14:18:35 as **
  • Language and Ideology Language in Ideology
    Journal of Language and Politics, Vol. 6, No. 1. (April 2007), pp. 1-5.
    by Wodak, Ruth
    posted to ology by Salma on 2008-01-03 00:58:12 as ***
  • GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.
    Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2178-2179.
    by J Vlasblom, S Wu, S Pu, M Superina, G Liu, C Orsi, SJ Wodak
    posted to no-tag by jyuh on 2008-01-01 03:01:44 as ** along with 1 person maldi
  • Identifying functional modules in the physical interactome of <B><I>Saccharomyces cerevisiae</I></B>
    PROTEOMICS, Vol. 7, No. 6. (2007), pp. 944-960.
    by Shuye Pu, Jim Vlasblom, Andrew Emili, Jack Greenblatt, Shoshana J Wodak
    posted to clustering network pin by cjeans on 2007-12-11 01:15:07 as **
  • Assessment of blind predictions of protein-protein interactions: current status of docking methods.
    Proteins, Vol. 52, No. 1. (1 July 2003), pp. 51-67.
    by R Méndez, R Leplae, L De Maria, SJ Wodak
    posted to docking interface ppi by cjeans on 2007-11-27 11:52:19 as ** along with 4 people and 2 groups bicko chad_davis ima sangeetha Bioinformatics insilicodrug
  • Modelling the polypeptide backbone with 'spare parts' from known protein structures
    Protein Eng., Vol. 2, No. 5. (1 January 1989), pp. 335-345.
    by Michel Claessens, Eric van Cutsem, Ignace Lasters, Shoshana Wodak
    posted to protein structure by j3xucite on 2007-10-31 21:36:06 as ** along with 1 person dgront
  • CAPRI: a Critical Assessment of PRedicted Interactions.
    Proteins, Vol. 52, No. 1. (1 July 2003), pp. 2-9.
    by J Janin, K Henrick, J Moult, LT Eyck, MJ Sternberg, S Vajda, I Vakser, SJ Wodak,
    posted to docking by ffranca on 2007-09-18 09:45:25 as ** along with 2 people chad_davis selrac
  • Methods of Text and Discourse Analysis
    (22 September 2000)
    by Stefan Titscher, Michael Meyer, Ruth Wodak, Eva Vetter
    posted to discourse-analysis methods theory by jpassoth on 2007-08-26 16:00:03 as ** along with 4 people and 1 group Taragui deleon PG_CCR esayre Discourse_analysis
  • Commemorating the past: the discursive construction of official narratives about the `Rebirth of the Second Austrian Republic'
    DISCOURSE COMMUNICATION, Vol. 1, No. 3. (1 August 2007), pp. 337-363.
    by Ruth Wodak, Rudolf de Cillia
    posted to discourse narrative by jpassoth on 2007-08-26 12:50:44 as **
  • Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
    BMC Bioinformatics, Vol. 8 (27 July 2007), 270.
    by Guillaume Launay, Raul Mendez, Shoshana Wodak, Thomas Simonson
    posted to interactions molecular_dynamics protein-protein by grahamc on 2007-08-13 17:04:55 as * along with 1 group ParkinsonLab_at_MaRS
  • CYGD: the Comprehensive Yeast Genome Database
    Nucleic Acids Research, Vol. 33, No. Supplement 1. (1 January 2005), D364.
    by U Guldener, M Munsterkotter, G Kastenmuller, N Strack, J van Helden, C Lemer, J Richelles, SJ Wodak, J Garcia-Martinez, JE Perez-Ortin, H Michael, A Kaps, E Talla, B Dujon, B Andre, JL Souciet, J De Montigny, E Bon, C Gaillardin, HW Mewes
    posted to no-tag by ichbins81 on 2007-08-03 13:30:41 as **
  • Relating destabilizing regions to known functional sites in proteins
    BMC Bioinformatics, Vol. 8 (30 April 2007), 141.
    by Benoit H Dessailly, Marc F Lensink, Shoshana J Wodak
    posted to function-prediction protein-stability by Einat on 2007-05-25 11:28:43 as ***** along with 1 group structural_bioinformatics
  • Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions.
    J Mol Biol, Vol. 221, No. 3. (5 October 1991), pp. 961-979.
    by MJ Rooman, JP Kocher, SJ Wodak
    posted to 12 by luwenwei on 2007-05-17 08:29:02 as **** along with 1 person warlock6x3
  • Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Proteins, Vol. 60, No. 2. (1 August 2005), pp. 150-169.
    by R Mendez, R Leplae, MF Lensink, SJ Wodak
    posted to binding modelling review structure validation algorithm by chad_davis on 2007-05-15 16:58:57 as *** along with 1 person bluvsh1
  • Structural features of protein-nucleic acid recognition sites.
    Biochemistry, Vol. 38, No. 7. (16 February 1999), pp. 1999-2017.
    by K Nadassy, SJ Wodak, J Janin
    posted to protein-na_interaction by medic0747 on 2007-01-29 12:54:30 as ** along with 1 person kaarsinogen
  • Modularity of the transcriptional response of protein complexes in yeast.
    J Mol Biol, Vol. 363, No. 2. (20 October 2006), pp. 589-610.
    by N Simonis, D Gonze, C Orsi, J van Helden, SJ Wodak
    posted to networks tf yeast by aswin on 2006-11-10 15:11:30 as *****
  • The Discursive Construction of National Identity
    (15 March 2000)
    by Ruth Wodak, Rudolf de Cillia, Martin Reisigl, Karin Liebhart
    posted to identity nationalism by deleon on 2006-07-23 00:16:32 as ** along with 2 people and 1 group Taragui PG_CCR Discourse_analysis
  • ACLAME: a CLAssification of Mobile genetic Elements.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by R Leplae, A Hebrant, SJ Wodak, A Toussaint
    posted to prediction prophage by vwchan on 2006-07-18 18:25:13 as ** along with 1 group beta
  • Structural domains in proteins and their role in the dynamics of protein function.
    Prog Biophys Mol Biol, Vol. 42, No. 1. (1983), pp. 21-78.
    by J Janin, SJ Wodak
    posted to automatic domain identification partition protein structure by dimka on 2006-06-14 21:47:57 as ** along with 1 person and 1 group yongzhao TSRI_MGL
  • Structural basis of macromolecular recognition.
    Adv Protein Chem, Vol. 61 (2002), pp. 9-73.
    by SJ Wodak, J Janin
    posted to interactions protein structure surface by pansapiens on 2006-05-31 08:27:56 as **
  • Progressive combinatorial algorithm for multiple structural alignments: application to distantly related proteins.
    Proteins, Vol. 55, No. 2. (1 May 2004), pp. 436-454.
    by ME Ochagavía, S Wodak
    posted to alignment multiple structure by dimka on 2006-05-03 05:29:33 as **
  • Computational protein design is a challenge for implicit solvation models.
    Biophys J, Vol. 88, No. 1. (January 2005), pp. 156-171.
    by A Jaramillo, SJ Wodak
    posted to energy by bluvsh1 on 2006-04-25 17:43:41 as read
  • Folding free energy function selects native-like protein sequences in the core but not on the surface
    PNAS, Vol. 99, No. 21. (15 October 2002), pp. 13554-13559.
    by Alfonso Jaramillo, Lorenz Wernisch, Stephanie Hery, Shoshana J Wodak
    posted to protein_design protein_structure by barry on 2006-03-22 20:18:42 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Typical interaction patterns in alphabeta and betaalpha turn motifs.
    Protein Eng, Vol. 11, No. 7. (July 1998), pp. 505-522.
    by R Wintjens, SJ Wodak, M Rooman
    posted to motifs protein_structure secondary-structure by Einat on 2006-03-20 12:31:46 as read along with 1 group structural_bioinformatics
  • Automatic definition of recurrent local structure motifs in proteins.
    J Mol Biol, Vol. 213, No. 2. (20 May 1990), pp. 327-336.
    by MJ Rooman, J Rodriguez, SJ Wodak
    posted to motifs protein_structure by Einat on 2006-03-20 12:13:16 as **** along with 1 group structural_bioinformatics
  • Haemoglobin: the surface buried between the alpha 1 beta 1 and alpha 2 beta 2 dimers in the deoxy and oxy structures.
    J Mol Biol, Vol. 183, No. 2. (25 May 1985), pp. 267-270.
    by AM Lesk, J Janin, S Wodak, C Chothia
    posted to project by ana on 2006-01-27 23:42:48 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Inferring meaningful pathways in weighted metabolic networks.
    J Mol Biol, Vol. 356, No. 1. (10 February 2006), pp. 222-236.
    by D Croes, F Couche, SJ Wodak, J van Helden
    posted to network pathway small_world by tny on 2006-01-22 08:06:17 as ** along with 1 person Borelli
  • Activation of CCR5 by chemokines involves an aromatic cluster between transmembrane helices 2 and 3.
    J Biol Chem, Vol. 278, No. 3. (17 January 2003), pp. 1892-1903.
    by C Govaerts, A Bondue, JY Springael, M Olivella, X Deupi, E Le Poul, SJ Wodak, M Parmentier, L Pardo, C Blanpain
    posted to ccr5 structure by tkershaw on 2005-10-26 14:02:18 as read along with 1 person and 1 group xdeupi LabCompMed
  • notes Automatic Analysis of Protein Conformational Changes by Multiple Linkage Clustering
    Journal of Molecular Biology, Vol. 253, No. 4. (3 November 1995), pp. 633-647.
    by Nathalie S Boutonnet, Marianne J Rooman, Shoshana J Wodak
    posted to bioinf_methods protein_design protein_dynamics protein_structure by barry on 2005-09-28 01:16:22 as ***** along with 2 groups structural_bioinformatics Bioinformatics
  • Representing and analysing molecular and cellular function using the computer.
    Biol Chem, Vol. 381, No. 9-10. (t 2000), pp. 921-935.
    by J van Helden, A Naim, R Mancuso, M Eldridge, L Wernisch, D Gilbert, SJ Wodak
    posted to no-tag by alexr on 2005-07-01 12:35:55 as ** along with 1 person and 2 groups irenas dbk-lab Autoregulation
  • An overview of data models for the analysis of biochemical pathways.
    Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 246-259.
    by Y Deville, D Gilbert, J van Helden, SJ Wodak
    posted to no-tag by alexr on 2005-06-21 20:44:16 as ** along with 1 person and 2 groups greg spliceml Autoregulation
  • Disorders of Discourse
    (01 July 1996)
    by Ruth Wodak
    posted to cda by Taragui on 2005-05-18 17:03:38 as *** along with 1 group Discourse_analysis
  • Discourse and Discrimination: Rhetorics of Racism and Antisemitism
    (15 January 2000)
    by Martin Reisigl, Ruth Wodak
    posted to cda racism by Taragui on 2005-05-18 17:03:17 as *** along with 1 group Discourse_analysis
  • The aMAZE LightBench: a web interface to a relational database of cellular processes.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by C Lemer, E Antezana, F Couche, F Fays, X Santolaria, R Janky, Y Deville, J Richelle, SJ Wodak
    posted to db memo by irenas on 2005-03-23 16:02:50 as ** along with 1 group dbk-lab
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/author/Wodak

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