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著者: Stajich [26 articles]

Recent papers posted to CiteULike by the author Stajich.
  • The evolution of Mammalian gene families.
    PLoS ONE, Vol. 1 (2006)
    by JP Demuth, TD Bie, JE Stajich, N Cristianini, MW Hahn
    posted to mothoin by bpcusack on 2008-07-15 16:48:33 as ** along with 1 person stajich
  • The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 88-92.
    by F Martin, A Aerts, D Ahren, A Brun, EGJ Danchin, F Duchaussoy, J Gibon, A Kohler, E Lindquist, V Pereda, A Salamov, HJ Shapiro, J Wuyts, D Blaudez, M Buee, P Brokstein, B Canback, D Cohen, PE Courty, PM Coutinho, C Delaruelle, JC Detter, A Deveau, S Difazio, S Duplessis, L Fraissinet-Tachet, E Lucic, P Frey-Klett, C Fourrey, I Feussner, G Gay, J Grimwood, PJ Hoegger, P Jain, S Kilaru, J Labbe, YC Lin, V Legue, F Le Tacon, R Marmeisse, D Melayah, B Montanini, M Muratet, U Nehls, H Niculita-Hirzel, Oudot-Le MP Secq, M Peter, H Quesneville, B Rajashekar, M Reich, N Rouhier, J Schmutz, T Yin, M Chalot, B Henrissat, U Kues, S Lucas, Y Van de Peer, GK Podila, A Polle, PJ Pukkila, PM Richardson, P Rouze, IR Sanders, JE Stajich, A Tunlid, G Tuskan, IV Grigoriev
    posted to genoms by manzanita on 2008-06-20 13:00:40 as ** along with 6 people jamselem neils alexl biomcgary cmzmasek urgi
  • The generic genome browser: a building block for a model organism system database.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.
    by LD Stein, C Mungall, S Shu, M Caudy, M Mangone, A Day, E Nickerson, JE Stajich, TW Harris, A Arva, S Lewis
    posted to vitae opensource gmod genomebrowser gbrowse by tharris on 2008-05-23 11:33:48 as read along with 7 people and 1 group dullhunk farhat Cortel indigoviolet dquest stajich natstreet EisenLab
  • Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans
    Genome Biology, Vol. 9 (22 February 2008), R41.
    by Guanggan Hu, Iris Liu, Anita Sham, Jason E Stajich, Fred S Dietrich, James W Kronstad
    posted to fungi cryptococcus comparative_genomics cgh by stajich to the group Berkeley Mycology on 2008-05-19 06:48:44 as read
  • Estimating the tempo and mode of gene family evolution from comparative genomic data
    Genome Res., Vol. 15, No. 8. (1 August 2005), pp. 1153-1160.
    by Matthew W Hahn, Tijl De Bie, Jason E Stajich, Chi Nguyen, Nello Cristianini
    posted to bioinf by Ema on 2008-05-15 21:51:54 as **
  • Reconstructing the early evolution of Fungi using a six-gene phylogeny
    Nature, Vol. 443, No. 7113., pp. 818-822.
    by Timothy Y James, Frank Kauff, Conrad L Schoch, Brandon P Matheny, Valérie Hofstetter, Cymon J Cox, Gail Celio, Cécile Gueidan, Emily Fraker, Jolanta Miadlikowska, Thorsten H Lumbsch, Alexandra Rauhut, Valérie Reeb, Elizabeth A Arnold, Anja Amtoft, Jason E Stajich, Kentaro Hosaka, Gi-Ho Sung, Desiree Johnson, Ben O’rourke, Michael Crockett, Manfred Binder, Judd M Curtis, Jason C Slot, Zheng Wang, Andrew W Wilson, Arthur Schüßler, Joyce E Longcore, Kerry O’donnell, Sharon Mozley-Standridge, David Porter, Peter M Letcher, Martha J Powell, John W Taylor, Merlin M White, Gareth W Griffith, David R Davies, Richard A Humber, Joseph B Morton, Junta Sugiyama, Amy Y Rossman, Jack D Rogers, Don H Pfister, David Hewitt, Karen Hansen, Sarah Hambleton, Robert A Shoemaker, Jan Kohlmeyer, Brigitte Volkmann-Kohlmeyer, Robert A Spotts, Maryna Serdani, Pedro W Crous, Karen W Hughes, Kenji Matsuura, Ewald Langer, Gitta Langer, Wendy A Untereiner, Robert Lücking, Burkhard Büdel, David M Geiser, André Aptroot, Paul Diederich, Imke Schmitt, Matthias Schultz, Rebecca Yahr, David S Hibbett, François Lutzoni, David J Mclaughlin, Joseph W Spatafora, Rytas Vilgalys
    posted to tree phylogeny mathematics have_as_pdf genetics fungi evolution bioinformatics alignment by Patola on 2008-05-14 11:41:26 as *** along with 2 people stajich seitentaisei
  • The Bioperl Toolkit: Perl Modules for the Life Sciences
    Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618.
    by Jason E Stajich, David Block, Kris Boulez, Steven E Brenner, Stephen A Chervitz, Chris Dagdigian, Georg Fuellen, James G Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J Mungall, Brian I Osborne, Matthew R Pocock, Peter Schattner, Martin Senger, Lincoln D Stein, Elia Stupka, Mark D Wilkinson, Ewan Birney
    posted to perl bioperl by ninch on 2008-05-12 13:48:50 as * along with 17 people and 2 groups jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi EisenLab FAB-lab
  • Association study of Parkin gene polymorphisms with idiopathic Parkinson disease.
    Archives of neurology, Vol. 60, No. 7. (July 2003), pp. 975-980.
    by SA Oliveira, WK Scott, MA Nance, RL Watts, JP Hubble, WC Koller, KE Lyons, R Pahwa, MB Stern, BC Hiner, J Jankovic, WG Ondo, FH Allen, BL Scott, CG Goetz, GW Small, FL Mastaglia, JM Stajich, F Zhang, MW Booze, JA Reaves, LT Middleton, JL Haines, MA Pericak-Vance, JM Vance, ER Martin
    posted to polymorphism parkinsons parkin genomcs by psique to the group parkinson's disease references on 2008-04-29 17:33:58 as ***
  • Complete genomic screen in Parkinson disease: evidence for multiple genes.
    JAMA : the journal of the American Medical Association, Vol. 286, No. 18. (14 November 2001), pp. 2239-2244.
    by WK Scott, MA Nance, RL Watts, JP Hubble, WC Koller, K Lyons, R Pahwa, MB Stern, A Colcher, BC Hiner, J Jankovic, WG Ondo, FH Allen, CG Goetz, GW Small, D Masterman, F Mastaglia, NG Laing, JM Stajich, B Slotterbeck, MW Booze, RC Ribble, E Rampersaud, SG West, RA Gibson, LT Middleton, AD Roses, JL Haines, BL Scott, JM Vance, MA Pericak-Vance
    posted to parkinsons genomics genetics by psique to the group parkinson's disease references on 2008-04-29 17:29:39 as **
  • A Fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
    BMC Evolutionary Biology, Vol. 6 (22 November 2006), 99.
    by David A Fitzpatrick, Mary E Logue, Jason E Stajich, Geraldine Butler
    posted to fungal-evolution by cmzmasek on 2008-04-19 03:29:43 as ** along with 3 people and 1 group dpollard stajich lusk EisenLab
  • The effects of selection against spurious transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 6. (June 2003), pp. 901-906.
    by MW Hahn, JE Stajich, GA Wray
    posted to cis_regulatory_evolution by emptyhb on 2008-04-12 21:19:28 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Open source tools and toolkits for bioinformatics: significance, and where are we?
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296.
    by JE Stajich, H Lapp
    posted to bioinformatic diplomarbeit notprinted opensource by moborg on 2008-03-12 08:49:01 as ** along with 7 people and 2 groups Ayest yas eweaver indigoviolet dgront stajich george_g EisenLab T_lab
  • Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.
    Gene, Vol. 383 (15 November 2006), pp. 24-32.
    by RA Cramer, JE Stajich, Y Yamanaka, FS Dietrich, WJ Steinbach, JR Perfect
    posted to amino-acid data-mining dna methods phylogenomics proteins by rvosa to the group FAB-lab on 2008-02-01 11:22:31 as ** along with 1 person stajich
  • notes Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
    Eukaryot Cell, Vol. 5, No. 5. (May 2006), pp. 789-793.
    by JE Stajich, FS Dietrich
    posted to evolution fungi intron by seitentaisei on 2008-01-31 21:06:13 as *** along with 3 people and 3 groups stajich dalloliogm raylim Web2 splicing yeast
  • notes Comparative genomic analysis of fungal genomes reveals intron rich ancestors
    Genome Biology, Vol. 8 (19 October 2007), R223.
    by Jason E Stajich, Fred S Dietrich, Scott W Roy
    posted to evolution fungi intron by seitentaisei on 2008-01-18 21:25:50 as read along with 2 people stajich biomcgary
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to briggsae caenorhabditis comparative_genomics genome_paper nematode by stajich to the group Berkeley Mycology on 2007-12-16 01:00:16 as ** along with 1 person sujaikumar
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to annotation comparative genome protein-coding by indigoviolet to the group EisenLab on 2007-11-23 08:34:28 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • The Cryptococcus neoformans catalase gene family and its role in antioxidant defense.
    Eukaryot Cell, Vol. 5, No. 9. (September 2006), pp. 1447-1459.
    by SS Giles, JE Stajich, C Nichols, QD Gerrald, JA Alspaugh, F Dietrich, JR Perfect
    posted to antioxidant cryptococcus defense fungal fungi by stajich on 2007-10-03 01:53:51 as read
  • Likelihoods From Summary Statistics: Recent Divergence Between Species
    Genetics, Vol. 171, No. 3. (1 November 2005), pp. 1419-1436.
    by Scotland C Leman, Yuguo Chen, Jason E Stajich, Mohamed A Noor, Marcy K Uyenoyama
    posted to importance-sampling likelihood methods summary-statistics theory by ryanraaum on 2007-07-13 13:42:51 as **
  • Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi
    Journal of Molecular Biology, Vol. 368, No. 1. (20 April 2007), pp. 273-282.
    by Luke B Harrison, Zhan Yu, Jason E Stajich, Fred S Dietrich, Paul M Harrison
    posted to evolution fungi prion yeast by stajich on 2007-05-22 06:34:46 as read
  • Evolution of the Mating Type Locus: Insights Gained from the Dimorphic Primary Fungal Pathogens Histoplasma capsulatum, Coccidioides immitis, and Coccidioides posadasii
    Eukaryotic Cell, Vol. 6, No. 4. (1 April 2007), pp. 622-629.
    by James A Fraser, Jason E Stajich, Eric J Tarcha, Garry T Cole, Diane O Inglis, Anita Sil, Joseph Heitman
    posted to coccidioides coccipaper evolution histoplasma mating_type by stajich on 2007-05-22 06:34:19 as read
  • Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species.
    Methods Mol Biol, Vol. 351 (2006), pp. 13-29.
    by A Coghlan, JE Stajich, TW Harris
    posted to celegans comparative_genomics by ana on 2007-05-22 00:47:14 as **** along with 2 groups structural_bioinformatics Bioinformatics
  • Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
    Nature, Vol. 444, No. 7115., pp. 97-101.
    by Jörg Kämper, Regine Kahmann, Michael Bölker, Li-Jun Ma, Thomas Brefort, Barry J Saville, Flora Banuett, James W Kronstad, Scott E Gold, Olaf Müller, Michael H Perlin, Han AB Wösten, Ronald de Vries, José Ruiz-Herrera, Cristina G Reynaga-Peña, Karen Snetselaar, Michael Mccann, José Pérez-Martín, Michael Feldbrügge, Christoph W Basse, Gero Steinberg, Jose I Ibeas, William Holloman, Plinio Guzman, Mark Farman, Jason E Stajich, Rafael Sentandreu, Juan M González-Prieto, John C Kennell, Lazaro Molina, Jan Schirawski, Artemio Mendoza-Mendoza, Doris Greilinger, Karin Münch, Nicole Rössel, Mario Scherer, Miroslav Vraneš, Oliver Ladendorf, Volker Vincon, Uta Fuchs, Björn Sandrock, Shaowu Meng, Eric CH Ho, Matt J Cahill, Kylie J Boyce, Jana Klose, Steven J Klosterman, Heine J Deelstra, Lucila Ortiz-Castellanos, Weixi Li, Patricia Sanchez-Alonso, Peter H Schreier, Isolde Häuser-Hahn, Martin Vaupel, Edda Koopmann, Gabi Friedrich, Hartmut Voss, Thomas Schlüter, Jonathan Margolis, Darren Platt, Candace Swimmer, Andreas Gnirke, Feng Chen, Valentina Vysotskaia, Gertrud Mannhaupt, Ulrich Güldener, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Hans-Werner Mewes, Evan W Mauceli, David Decaprio, Claire M Wade, Jonathan Butler, Sarah Young, David B Jaffe, Sarah Calvo, Chad Nusbaum, James Galagan, Bruce W Birren
    posted to fungi by bootsy on 2007-04-26 18:05:09 as ** along with 2 people stajich alexl
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to briggsae comparative evolution by sujaikumar on 2007-03-13 19:43:44 as *** along with 2 people and 1 group indigoviolet stajich EisenLab
  • Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak
    Nature (09 October 2005)
    by James A Fraser, Steven S Giles, Emily C Wenink, Scarlett G Geunes-Boyer, Jo R Wright, Stephanie Diezmann, Andria Allen, Jason E Stajich, Fred S Dietrich, John R Perfect, Joseph Heitman
    posted to cryptococcus by stajich on 2006-12-08 21:06:39 as read
  • Disentangling the Effects of Demography and Selection in Human History
    Mol Biol Evol, Vol. 22, No. 1. (1 January 2005), pp. 63-73.
    by Jason E Stajich, Matthew W Hahn
    posted to evolution popgen selection by djkt on 2006-08-04 01:49:34 as read
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/author/Stajich

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