新規登録 | ログイン | FAQ      [?] 

著者: Gingeras [28 articles]

Recent papers posted to CiteULike by the author Gingeras.
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to rna-seq by GeeSharpMinor on 2008-07-19 00:01:20 as ** along with 15 people and 5 groups Ema maximilianh jyuh balicea xico dchughes kengg sebastien_vigneau zwang ajgentles asddd hanansh antonkratz vietanh0 inesdesantiago Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 732-745.
    by Joel S Rozowsky, Daniel Newburger, Fred Sayward, Jiaqian Wu, Greg Jordan, Jan O Korbel, Ugrappa Nagalakshmi, Jin Yang, Deyou Zheng, Roderic Guigo, Thomas R Gingeras, Sherman Weissman, Perry Miller, Michael Snyder, Mark B Gerstein
    posted to encode by jasonflannick on 2008-07-11 17:16:32 as ** along with 3 people and 1 group djkt olympos ghattem Bioinformatics
  • Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 746-759.
    by France Denoeud, Philipp Kapranov, Catherine Ucla, Adam Frankish, Robert Castelo, Jorg Drenkow, Julien Lagarde, Tyler Alioto, Caroline Manzano, Jacqueline Chrast, Sujit Dike, Carine Wyss, Charlotte N Henrichsen, Nancy Holroyd, Mark C Dickson, Ruth Taylor, Zahra Hance, Sylvain Foissac, Richard M Myers, Jane Rogers, Tim Hubbard, Jennifer Harrow, Roderic Guigo, Thomas R Gingeras, Stylianos E Antonarakis, Alexandre Reymond
    posted to encode by jasonflannick on 2008-07-11 17:16:09 as ** along with 4 people and 1 group djkt olympos ghattem xingxu Bioinformatics
  • Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
    Science, Vol. 308, No. 5725. (20 May 2005), pp. 1149-1154.
    by Jill Cheng, Philipp Kapranov, Jorg Drenkow, Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey Long, David Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S Gerhard, Thomas R Gingeras
    posted to encode by jasonflannick on 2008-07-11 17:15:52 as ** along with 4 people karbak tmmurali tuck bertelsen
  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
    posted to epigenetics by jasonflannick on 2008-07-10 20:11:38 as ** along with 3 people olympos caseybrown inesdesantiago
  • The multitasking genome
    Nature Genetics, Vol. 38, No. 6., pp. 608-609.
    by Thomas R Gingeras
    posted to cagecluster by antonkratz on 2008-06-16 04:14:48 as ** along with 2 people olympos bioyang
  • Differential analysis for high density tiling microarray data
    BMC Bioinformatics, Vol. 8 (24 September 2007), 359.
    by Srinka Ghosh, Heather A Hirsch, Edward A Sekinger, Philipp Kapranov, Kevin Struhl, Thomas R Gingeras
    posted to tiling statistics microarray encode differential analysis by bertelsen on 2008-06-13 21:04:57 as *** along with 1 person jfr
  • Large-scale transcriptional activity in chromosomes 21 and 22.
    Science, Vol. 296, No. 5569. (3 May 2002), pp. 916-919.
    by P Kapranov, SE Cawley, J Drenkow, S Bekiranov, RL Strausberg, SP Fodor, TR Gingeras
    posted to microarray encode affymetrix by bertelsen on 2008-06-04 23:08:30 as ** along with 1 person evaf
  • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.
    Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509.
    by S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, A Piccolboni, V Sementchenko, J Cheng, AJ Williams, R Wheeler, B Wong, J Drenkow, M Yamanaka, S Patel, S Brubaker, H Tammana, G Helt, K Struhl, TR Gingeras
    posted to rna noncoding microarray encode affymetrix by bertelsen on 2008-06-04 23:08:03 as ** along with 5 people and 1 group brant evaf mtagaya kengg olympos Plantandetc
  • Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
    Genome Res. (29 January 2008), gr.6880908.
    by Alvaro Rada-Iglesias, Adam Ameur, Philipp Kapranov, Stefan Enroth, Jan Komorowski, Thomas R Gingeras, Claes Wadelius
    posted to transcription_factor disease chip_seq by davfre on 2008-05-07 00:20:17 as *** along with 1 person epigenetics
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to transcriptome methods breakthrough by xingxu on 2008-05-06 14:39:02 as ** along with 11 people and 4 groups marcius alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology BioinfoCIPF SGU-CIPF
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to data chip-chip application by gracio on 2008-05-05 20:45:59 as ** along with 10 people and 2 groups stajich lp2 magusina jfr kengg djkt xiaobeizhao cabbagezs idonaldson caseybrown Berkeley Mycology BergmanLab
  • notes High density synthetic oligonucleotide arrays.
    Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 20-24.
    by RJ Lipshutz, SP Fodor, TR Gingeras, DJ Lockhart
    posted to microarray history by shikin on 2008-05-05 15:33:42 as ** along with 2 people and 1 group jeremymiller incovoma GeschwindLab
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to drosophila chip-chip by brant on 2008-04-24 04:29:59 as ** along with 4 people kengg maximilianh caseybrown emptyhb
  • The transcriptional landscape of the mammalian genome.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563.
    by P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, VB Bajic, SE Brenner, S Batalov, AR Forrest, M Zavolan, MJ Davis, LG Wilming, V Aidinis, JE Allen, A Ambesi-Impiombato, R Apweiler, RN Aturaliya, TL Bailey, M Bansal, L Baxter, KW Beisel, T Bersano, H Bono, AM Chalk, KP Chiu, V Choudhary, A Christoffels, DR Clutterbuck, ML Crowe, E Dalla, BP Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, CF Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, P Georgii-Hemming, TR Gingeras, T Gojobori, RE Green, S Gustincich, M Harbers, Y Hayashi, TK Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, SP Krishnan, A Kruger, SK Kummerfeld, IV Kurochkin, LF Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S McWilliam, M Madan Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, S Mottagui-Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, KC Pang, WJ Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, JF Reid, BZ Ring, M Ringwald, B Rost, Y Ruan, SL Salzberg, A Sandelin, C Schneider, C Schönbach, K Sekiguchi, CA Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, SL Tan, S Tang, MS Taylor, J Tegner, SA Teichmann, HR Ueda, E van Nimwegen, R Verardo, CL Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, SM Grimmond, RD Teasdale, ET Liu, V Brusic, J Quackenbush, C Wahlestedt, JS Mattick, DA Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, M Kanamori-Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Y Okamura-Oho, H Suzuki, J Kawai, Y Hayashizaki, ,
    posted to jfrbib by jfr on 2008-03-30 21:04:02 as read along with 16 people and 1 group setar miguel Cortel jwortman tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mbj mtagaya olympos raylim gjuggler Bioinformatics
  • Origin of phenotypes: Genes and transcripts.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 682-690.
    by TR Gingeras
    posted to rna by michC on 2008-03-23 00:26:17 as ** along with 8 people and 4 groups bertelsen jyuh balicea xico dchughes ghattem Garamonfok Jporci Bioinformatics WetBiology G4ID Genetics-of-Gambling
  • Microarray-based DNA methylation profiling: technology and applications.
    Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 528-542.
    by A Schumacher, P Kapranov, Z Kaminsky, J Flanagan, A Assadzadeh, P Yau, C Virtanen, N Winegarden, J Cheng, T Gingeras, A Petronis
    posted to no-tag by tvdbulck on 2008-03-21 14:37:41 as ** along with 1 person tuck
  • TUF Love for "Junk" DNA
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1215-1220.
    by Aarron T Willingham, Thomas R Gingeras
    posted to affymetrix genomics transcriptomics by Montrachet on 2008-03-11 19:04:34 as **
  • EGASP: the human ENCODE Genome Annotation Assessment Project.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, S Antonarakis, M Ashburner, VB Bajic, E Birney, R Castelo, E Eyras, C Ucla, TR Gingeras, J Harrow, T Hubbard, SE Lewis, MG Reese
    posted to recent_genefinding by wenhan on 2008-02-25 22:32:55 as ** along with 3 people and 2 groups jfr indigoviolet timhubbard Bioinformatics EisenLab
  • notes Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs
    Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509.
    by Simon Cawley, Stefan Bekiranov, Huck H Ng, Philipp Kapranov, Edward A Sekinger, Dione Kampa, Antonio Piccolboni, Victor Sementchenko, Jill Cheng, Alan J Williams, Raymond Wheeler, Brant Wong, Jorg Drenkow, Mark Yamanaka, Sandeep Patel, Shane Brubaker, Hari Tammana, Gregg Helt, Kevin Struhl, Thomas R Gingeras
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 18:48:45 as ** along with 1 person johncumbers
  • Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 839-851.
    by D Zheng, A Frankish, R Baertsch, P Kapranov, A Reymond, SW Choo, Y Lu, F Denoeud, SE Antonarakis, M Snyder, Y Ruan, CL Wei, TR Gingeras, R Guigó, J Harrow, MB Gerstein
    posted to pseudogene tez by olympos on 2007-11-18 21:17:37 as ** along with 2 people and 3 groups dchughes ghattem Bioinformatics G4ID Genetics-of-Gambling
  • Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.
    BMC Bioinformatics, Vol. 7 (05 October 2006), 434.
    by Srinka Ghosh, Heather A Hirsch, Edward Sekinger, Kevin Struhl, Thomas R Gingeras
    posted to tez by olympos on 2007-11-05 02:03:09 as ** along with 1 person jfr
  • Biological function of unannotated transcription during the early development of Drosophila melanogaster
    Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158.
    by Robert J Manak, Sujit Dike, Victor Sementchenko, Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R Gingeras
    posted to affy development drosophila transcription by Stew on 2007-09-21 21:03:24 as read along with 5 people and 6 groups dpollard neveaire djkt wrowell xingxu Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
  • Structured RNAs in the ENCODE selected regions of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 852-864.
    by Stefan Washietl, Jakob S Pedersen, Jan O Korbel, Claudia Stocsits, Andreas R Gruber, Jorg Hackermuller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R Gingeras, Roderic Guigo, Michael Snyder, Mark B Gerstein, Alexandre Reymond, Ivo L Hofacker, Peter F Stadler
    posted to encode by ghattem on 2007-07-13 15:38:48 as ** along with 1 person and 1 group ilh Bioinformatics
  • Genome-wide analysis of estrogen receptor binding sites
    Nature Genetics, Vol. 38, No. 11. (01 October 2006), pp. 1289-1297.
    by Jason S Carroll, Clifford A Meyer, Jun Song, Wei Li, Timothy R Geistlinger, Jérôme Eeckhoute, Alexander S Brodsky, Erika K Keeton, Kirsten C Fertuck, Giles F Hall, Qianben Wang, Stefan Bekiranov, Victor Sementchenko, Edward A Fox, Pamela A Silver, Thomas R Gingeras, Shirley X Liu, Myles Brown
    posted to longrange by olympos on 2007-01-30 14:45:16 as ** along with 1 person jfr
  • Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
    Genome Res., Vol. 15, No. 7. (1 July 2005), pp. 987-997.
    by Philipp Kapranov, Jorg Drenkow, Jill Cheng, Jeffrey Long, Gregg Helt, Sujit Dike, Thomas R Gingeras
    posted to transcriptome race by olympos on 2007-01-25 15:57:05 as **
  • Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays.
    J Clin Microbiol, Vol. 37, No. 1. (January 1999), pp. 49-55.
    by A Troesch, H Nguyen, CG Miyada, S Desvarenne, TR Gingeras, PM Kaplan, P Cros, C Mabilat
    posted to no-tag by leelarcombe on 2006-11-06 15:47:26 as read
  • Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.
    Genome Res, Vol. 14, No. 3. (March 2004), pp. 331-342.
    by D Kampa, J Cheng, P Kapranov, M Yamanaka, S Brubaker, S Cawley, J Drenkow, A Piccolboni, S Bekiranov, G Helt, H Tammana, TR Gingeras
    posted to 21 22 array human novel rna tiling by kaspermunch on 2005-11-16 10:41:42 as read along with 1 person and 1 group evaf Bioinformatics
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/author/Gingeras

    RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.