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著者: Dopazo [46 articles]

Recent papers posted to CiteULike by the author Dopazo.
  • Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.
    Nucleic Acids Res (17 December 2007)
    by Joke Reumers, Lucia Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost Van V Durme, Joaquin Dopazo, Frederic Rousseau, Joost Schymkowitz
    posted to no-tag by skoddet to the group Nielsen group on 2008-06-20 15:31:29 as ** along with 1 person jyuh
  • From genes to functional classes in the study of biological systems
    BMC Bioinformatics, Vol. 8 (03 April 2007), 114.
    by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo
    posted to selection go by djkt on 2008-06-19 17:27:56 as ** along with 5 people and 1 group jfr Sharpshoot ealloza ajw Garamonfok BioinfoCIPF
  • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 578-580.
    by Fatima Al-Shahrour, Ramon Diaz-Uriarte, Joaquin Dopazo
    posted to probmod function enrichment by ellakat on 2008-06-18 22:18:38 as ** along with 5 people sgoetz aalibes RMGraze macavity1g Garamonfok
  • High-throughput functional annotation and data mining with the Blast2GO suite
    Nucl. Acids Res. (29 April 2008), gkn176.
    by Stefan Gotz, Juan M Garcia-Gomez, Javier Terol, Tim D Williams, Shivashankar H Nagaraj, Maria J Nueda, Montserrat Robles, Manuel Talon, Joaquin Dopazo, Ana Conesa
    posted to sets gene enrichment annotation by barriot on 2008-06-09 06:53:25 as ** along with 2 people sgoetz jyuh
  • GEPAS, a web-based tool for microarray data analysis and interpretation
    Nucl. Acids Res. (28 May 2008), gkn303.
    by Joaquin Tarraga, Ignacio Medina, Jose Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fatima Al-Shahrour, Susana Vegas-Azcarate, Stefan Goetz, Pablo Escobar, Francisco Garcia-Garcia, Ana Conesa, David Montaner, Joaquin Dopazo
    posted to no-tag by sgoetz on 2008-06-02 14:50:49 as **
  • Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
    Nucl. Acids Res. (31 May 2008), gkn318.
    by Fatima Al-Shahrour, Jose Carbonell, Pablo Minguez, Stefan Goetz, Ana Conesa, Joaquin Tarraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquin Dopazo
    posted to no-tag by sgoetz on 2008-06-02 12:17:49 as ** along with 2 people balicea neils
  • PhylomeDB: a database for genome-wide collections of gene phylogenies.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by Huerta J Cepas, A Bueno, J Dopazo, T Gabaldón
    posted to 08-smbe by gjuggler on 2008-05-22 16:59:35 as **
  • BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005), pp. W460-W464.
    by F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo
    posted to no-tag by sgoetz on 2008-05-20 18:12:53 as ** along with 4 people and 2 groups RMGraze marcius eweaver Garamonfok BioinfoCIPF SGU-CIPF
  • A computer program for the design of PCR primers for diagnosis of highly variable genomes.
    Journal of virological methods, Vol. 41, No. 2. (February 1993), pp. 157-165.
    by J Dopazo, F Sobrino
    posted to viral_pcr software by nghoffma on 2008-05-02 00:51:56 as **
  • CLEAR-test: combining inference for differential expression and variability in microarray data analysis.
    J Biomed Inform, Vol. 41, No. 1. (February 2008), pp. 33-45.
    by J Valls, M Grau, X Solé, P Hernández, D Montaner, J Dopazo, MA Peinado, G Capellá, V Moreno, MA Pujana
    posted to no-tag by jyuh on 2008-03-15 03:35:43 as **
  • Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to evolution master by operon on 2008-03-10 02:35:44 as ** along with 4 people and 2 groups marcius jordibc hdopazo Garamonfok BioinfoCIPF SGU-CIPF
  • Functional profiling of microarray experiments using text-mining derived bioentities
    Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3098-3099.
    by Pablo Minguez, Fatima Al-Shahrour, David Montaner, Joaquin Dopazo
    posted to microarray text-mining by yas on 2008-02-26 09:35:33 as ** along with 3 people jyuh heliopais dmontaner
  • FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
    Nucleic Acids Research, Vol. 35 (3 May 2007), pp. W91-W96.
    by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
    posted to gene_ontology tools by heliopais on 2008-02-15 09:18:35 as read along with 3 people and 1 group jyuh jfr ealloza BioinfoCIPF
  • Functional profiling and gene expression analysis of chromosomal copy number alterations.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 432-435.
    by L Conde, D Montaner, J Burguet-Castell, J Tárraga, F Al-Shahrour, J Dopazo
    posted to copy-number methodology review by jfr on 2008-02-13 10:29:46 as ** along with 1 person and 1 group ealloza BioinfoCIPF
  • The computation of particle size in Eulerian-Eulerian models of coal combustion
    International Journal of Multiphase Flow, Vol. 23, No. 3. (June 1997), pp. 607-612.
    by N Fueyo, J Ballester, C Dopazo
    posted to cfd coal eulerian multiphase by mighelone to the group CFD on 2008-02-07 11:40:37 as **
  • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    (2001)
    by J Herrero, A Valencia, J Dopazo
    posted to dmbi-gem-clustering by dps on 2008-01-20 04:27:10 as **
  • Discovery and hypothesis generation through bioinformatics.
    Genome Biol, Vol. 7, No. 2. (2006)
    by J Dopazo, P Aloy
    posted to protein-interactions review by ruvido on 2008-01-13 19:22:00 as **
  • Evidence for systems-level molecular mechanisms of tumorigenesis
    BMC Genomics, Vol. 8 (20 June 2007), 185.
    by Pilar Hernandez, Jaime Huerta-Cepas, David Montaner, Fatima Al-Shahrour, Joan Valls, Laia Gomez, Gabriel Capella, Joaquin Dopazo, Miguel A Pujana
    posted to systems_biology by jfr on 2007-12-06 11:34:24 as ***
  • Next station in microarray data analysis: GEPAS.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, L Conde, P Minguez, J Vera, S Mukherjee, J Valls, MA Pujana, E Alloza, J Herrero, F Al-Shahrour, J Dopazo
    posted to microarray by sgoetz on 2007-11-14 20:14:24 as * along with 5 people and 2 groups marcius tardigrade rdiaz ealloza schuylrp BioinfoCIPF SGU-CIPF
  • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    Bioinformatics, Vol. 17, No. 2. (1 February 2001), pp. 126-136.
    by Javier Herrero, Alfonso Valencia, Joaquin Dopazo
    posted to clustering by daevans on 2007-11-13 13:24:42 as **
  • Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences
    BMC Genomics, Vol. 8 (08 August 2007), 271.
    by Daniel Rico, Juan M Vaquerizas, Hernan Dopazo, Lisardo Bosca
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-29 13:52:22 as **
  • Prophet, a web-based tool for class prediction using microarray data.
    Bioinformatics (30 November 2006)
    by Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo
    posted to no-tag by jyuh on 2007-09-13 16:22:08 as ** along with 2 people jfr rdiaz
  • Codelink: an R package for analysis of GE healthcare gene expression bioarrays.
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1168-1169.
    by D Diez, R Alvarez, A Dopazo
    posted to bioconductor bioinformatics by jfr on 2007-09-05 11:49:02 as *
  • The human phylome
    Genome Biology, Vol. 8 (13 June 2007), R109.
    by Jaime Huerta-Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón
    posted to coding phylogenetics phylogenomics by aprasad on 2007-07-31 14:39:43 as ** along with 3 people and 2 groups dpollard grahamc cjeans EisenLab ParkinsonLab_at_MaRS
  • A function-centric approach to the biological interpretation of microarray time-series.
    Genome Inform, Vol. 17, No. 2. (2006), pp. 57-66.
    by P Minguez, F Al-Shahrour, J Dopazo
    posted to bioinformatics microarray plasmodium postgenomics by Sharpshoot on 2007-06-29 09:24:53 as *****
  • Functional interpretation of microarray experiments.
    OMICS, Vol. 10, No. 3. (2006), pp. 398-410.
    by J Dopazo
    posted to gene_list_analysis gene_set_analysis microarray review by ealloza on 2007-06-25 17:38:29 as read along with 1 person and 1 group jfr BioinfoCIPF
  • A Model for the Emergence of Adaptive Subsystems
    Bulletin of Mathematical Biology, Vol. 65, No. 1. (January 2003), pp. 27-56.
    by H Dopazo, MB Gordon, R Perazzo, S Risau-Gusman
    posted to baldwin_effect by RobMills on 2007-06-24 10:18:37 as ** along with 1 person and 1 group hdopazo BioinfoCIPF
  • Genome-scale evidence of the nematode-arthropod clade.
    Genome Biol, Vol. 6, No. 5. (2005)
    by H Dopazo, J Dopazo
    posted to phylome by Garamonfok on 2007-06-20 00:48:34 as * along with 2 people and 2 groups marcius hdopazo BioinfoCIPF SGU-CIPF
  • A predictor based on the somatic genomic changes of the BRCA1/BRCA2 breast cancer tumors identifies the non-BRCA1/BRCA2 tumors with BRCA1 promoter hypermethylation.
    Clin Cancer Res, Vol. 11, No. 3. (1 February 2005), pp. 1146-1153.
    by S Alvarez, R Diaz-Uriarte, A Osorio, A Barroso, L Melchor, MF Paz, E Honrado, R Rodríguez, M Urioste, L Valle, O Díez, JC Cigudosa, J Dopazo, M Esteller, J Benitez
    posted to brca breast_cancer by jfr on 2007-05-11 14:45:27 as **
  • HCAD, closing the gap between breakpoints and genes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by R Hoffmann, J Dopazo, JC Cigudosa, A Valencia
    posted to abberations chomosomal link locus mining text by florianleitner on 2007-05-07 10:53:23 as ***
  • BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, JM Vaquerizas, L Conde, C Blaschke, J Vera, J Dopazo
    posted to tools by Garamonfok on 2007-04-17 10:27:18 as read along with 2 people and 2 groups marcius ealloza BioinfoCIPF SGU-CIPF
  • Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2988-2993.
    by F Al-Shahrour, R Díaz-Uriarte, J Dopazo
    posted to tools by Garamonfok on 2007-04-17 10:23:27 as read along with 4 people and 2 groups marcius eweaver rdiaz ealloza BioinfoCIPF SGU-CIPF
  • notes Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships
    Computational Intelligence in Bioinformatics and Computational Biology, 2004. CIBCB '04. Proceedings of the 2004 IEEE Symposium on (2004), pp. 25-31.
    by H Wang, F Azuaje, O Bodenreider, J Dopazo
    posted to wang-04 semantic-similarity gene-ontology gene-expression-correlation by CitoJam on 2006-12-15 15:25:59 as ***
  • Gene expression analysis of chromosomal regions with gain or loss of genetic material detected by comparative genomic hybridization.
    Genes Chromosomes Cancer, Vol. 41, No. 4. (December 2004), pp. 353-365.
    by B Meléndez, R Díaz-Uriarte, M Cuadros, A Martínez-Ramírez, J Fernández-Piqueras, A Dopazo, JC Cigudosa, C Rivas, J Dopazo, B Martínez-Delgado, J Benítez
    posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-19 20:31:33 as *****
  • Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 March 2006), e.
    by Leonardo Arbiza, Joaquín Dopazo, Hernan J Dopazo
    posted to acceleration evolution selection by djkt on 2006-08-03 22:01:11 as read
  • A model for the interaction of learning and evolution.
    Bull Math Biol, Vol. 63, No. 1. (January 2001), pp. 117-134.
    by H Dopazo, MB Gordon, R Perazzo, S Risau-Gusman
    posted to baldwin development effect evolution learning plasticity by hdopazo on 2006-07-20 14:20:19 as ***** along with 1 group BioinfoCIPF
  • Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by H Dopazo, J Santoyo, J Dopazo
    posted to ecdysozoa genomics phylogenomics by hdopazo on 2006-07-20 14:13:01 as ***** along with 1 group BioinfoCIPF
  • Selective Pressures at a Codon-level Predict Deleterious Mutations in Human Disease Genes.
    J Mol Biol (15 March 2006)
    by Leonardo Arbiza, Serena Duchi, David Montaner, Jordi Burguet, David Pantoja-Uceda, Antonio Pineda-Lucena, Joaquín Dopazo, Hernán Dopazo
    posted to human snp w by hdopazo on 2006-07-20 14:07:40 as ***** along with 1 person and 1 group postrational BioinfoCIPF
  • PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, J Schymkowitz, J Dopazo
    posted to human server snp w by hdopazo on 2006-07-20 14:03:11 as ***** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • notes Dynamics of velocity gradient invariants in turbulence: Restricted Euler and linear diffusion models
    Physics of Fluids, Vol. 10, No. 8. (1998), pp. 2012-2025.
    by Jesus Martin, Cesar Dopazo, Luis Valino
    posted to restricted-euler rq velocity-derivatives by l-alex on 2006-06-08 14:17:38 as read
  • Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions.
    BMC Genomics, Vol. 7, No. 1. (27 March 2006)
    by Josep Ramon R Goni, Juan Manuel M Vaquerizas, Joaquin Dopazo, Modesto Orozco
    posted to no-tag by postrational on 2006-04-07 09:38:24 as **
  • DNMAD: web-based diagnosis and normalization for microarray data.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3656-3658.
    by JM Vaquerizas, J Dopazo, R Díaz-Uriarte
    posted to bioinformatics microarray servers by marcius on 2006-01-17 19:12:18 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by L Conde, JM Vaquerizas, C Ferrer-Costa, X de la Cruz, M Orozco, J Dopazo
    posted to bioinformatics servers snp by marcius on 2006-01-17 19:10:02 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by JM Vaquerizas, L Conde, P Yankilevich, A Cabezón, P Minguez, R Díaz-Uriarte, F Al-Shahrour, J Herrero, J Dopazo
    posted to bioinformatics microarray software by marcius on 2006-01-17 19:09:34 as ** along with 1 person and 2 groups aalibes BioinfoCIPF SGU-CIPF
  • notes Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons.
    Genome Res, Vol. 12, No. 11. (November 2002), pp. 1703-1715.
    by A Mateos, J Dopazo, R Jansen, Y Tu, M Gerstein, G Stolovitzky
    posted to bio predict_function by lfriedl on 2005-09-29 20:23:42 as ** along with 1 person and 1 group tmmurali kdl
  • Comparing bacterial genomes through conservation profiles.
    Genome Res, Vol. 13, No. 5. (May 2003), pp. 991-998.
    by MJ Martin, J Herrero, A Mateos, J Dopazo
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:55:00 as *****
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/author/Dopazo

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